prot_Ecto-sp9_F_contig9043.17235.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9043.17235.1
Unique Nameprot_Ecto-sp9_F_contig9043.17235.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length143
Homology
BLAST of mRNA_Ecto-sp9_F_contig9043.17235.1 vs.
Match: SSD (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIK2_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 2.940e-83
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0
Query:    1 MVDDMTPRFEGEAGSGFGEGETFEDVDLDFFVKRSGDDIIENGNTPEPYLIIIAYLGMVIFAAVSMGSWKFSEPKSVALYSRVLLSLGGMFVVALSTAACLGFISALSIPLTPLSVSVVPFLSLGIGIDDMIIFIYTL 138
            MVDDMTPRFEGEAGSGFGEGETFE+VDLDFFVKRSGDDIIENGN PEPYLIIIAYLGMVIFAAVSMGSWKFSEPKSVALYSRVLLSLGGMFVVALSTAACLGFISALSIPLTPLSVSVVPFLSLGIGIDDMIIFIYTL
Sbjct:  344 MVDDMTPRFEGEAGSGFGEGETFEEVDLDFFVKRSGDDIIENGNIPEPYLIIIAYLGMVIFAAVSMGSWKFSEPKSVALYSRVLLSLGGMFVVALSTAACLGFISALSIPLTPLSVSVVPFLSLGIGIDDMIIFIYTL 481          
BLAST of mRNA_Ecto-sp9_F_contig9043.17235.1 vs.
Match: SSD (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVR1_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 1.960e-78
Identity = 136/139 (97.84%), Postives = 136/139 (97.84%), Query Frame = 0
Query:    1 MVDDMTPRFEGEAGSGFGEGETFEDVDLDFFVKRSGDDIIENGNTPEPYLIIIAYLGMVIFAAVSMGSWKFSEPKSVALYSRVLLSLGGMFVVALSTAACLGFISALSIPLTPLSVSVVPFLSLGIGIDDMIIFIYTLV 139
            MVDDMTPRFE E GSGFGEGETFEDVDLDFF KRSGDDIIENGNTPEPYLIIIAYLGMVIFAAVSMGSWKFSEPKSVALYSRVLLSLGGMFVVALSTAACLGFISALSIPLTPLSVSVVPFLSLGIGIDDMIIFIYTLV
Sbjct:  407 MVDDMTPRFEEETGSGFGEGETFEDVDLDFFAKRSGDDIIENGNTPEPYLIIIAYLGMVIFAAVSMGSWKFSEPKSVALYSRVLLSLGGMFVVALSTAACLGFISALSIPLTPLSVSVVPFLSLGIGIDDMIIFIYTLV 545          
BLAST of mRNA_Ecto-sp9_F_contig9043.17235.1 vs.
Match: Hypothetical (protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L2J5_9EUKA)

HSP 1 Score: 82.4 bits (202), Expect = 1.520e-15
Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = 0
Query:   28 LDFFVKRSGDDIIENGNTPEPYLIIIAYLGMVIFAAVSMGSWKFSEPKSVALYSRVLLSLGGMFVVALSTAACLGFISALSIPLTPLSVSVVPFLSLGIGIDDMIIFIYTLV 139
            +DF    S DDII++ + PE  L+I  YL ++I+ A+++  +         +YSR  L L G+FVVALST A  G ++A    L PLS ++VPFLSLGIG+DDM + I TLV
Sbjct:  241 IDFLFDDSVDDIIKDASKPEAILVITGYLVLIIYTALALCRFP-------CVYSRAGLGLMGIFVVALSTVAGFG-LTAFFEKLNPLSTNLVPFLSLGIGVDDMYVLIQTLV 344          
BLAST of mRNA_Ecto-sp9_F_contig9043.17235.1 vs.
Match: protein (patched homolog 2-like isoform X1 n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C8382)

HSP 1 Score: 77.4 bits (189), Expect = 8.690e-14
Identity = 47/138 (34.06%), Postives = 87/138 (63.04%), Query Frame = 0
Query:    1 MVDDMTPRFEGEAGSGFGEGETFEDVDLDFFVKRSGDDIIENGNTPEPYLIIIAYLGMVIFAAVSMGSWKFSEPKSVALYSRVLLSLGGMFVVALSTAACLGFISALSIPLTPLSVSVVPFLSLGIGIDDMIIFIYTL 138
            M++++ P  + +  + FG+   + D+ L+F + RS +DII + N    + I+++ + + I++ ++  ++K  +P    ++S   L+L GM VV+L+  A  GF +A+ I LTPL+ SVVPFL+LG+GIDD+ + +  L
Sbjct:  426 MINELDPLRQHQPSTIFGDKNIYGDLQLEFNMWRSSEDIISDANKTPVWQIVLSGILVSIYSFLAFVNFK--DP----VHSFTWLALTGMVVVSLAVIAGFGFSAAIGIKLTPLAGSVVPFLTLGLGIDDVFVLVSVL 557          
BLAST of mRNA_Ecto-sp9_F_contig9043.17235.1 vs.
Match: SSD (domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UAQ0_SALR5)

HSP 1 Score: 77.0 bits (188), Expect = 1.210e-13
Identity = 47/135 (34.81%), Postives = 76/135 (56.30%), Query Frame = 0
Query:    1 MVDDMTPRFEGEAGSGFGEGETFEDVDLDFFVKRSGDDIIENGNTPEPYLIIIAYLGMVIFAAVSMGSWKFSEPKSVALYSRVLLSLGGMFVVALSTAACLGFISALSIPLTPLSVSVVPFLSLGIGIDDMIIFI 135
            + D     ++  AG+GF +GE FED    F ++RS  D +      EP L++  +L   + A V + S  F      A+YS   ++  G+ ++  STAA LGF +   I  TP+S +VVPF++LG+GIDD+++ +
Sbjct:  895 VADHYDALWKRNAGTGFADGEEFEDQRFYFTLERSIPDTVAEAGKIEPGLLVGGFL--CLLAYVMLVSANFRN----AIYSHAWIAFAGVVLITASTAAALGFSAYCGIDFTPISSNVVPFVALGVGIDDVLVIL 1023          
BLAST of mRNA_Ecto-sp9_F_contig9043.17235.1 vs.
Match: NPC (intracellular cholesterol transporter 1 homolog 1b n=1 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D40720)

HSP 1 Score: 76.6 bits (187), Expect = 1.620e-13
Identity = 39/113 (34.51%), Postives = 71/113 (62.83%), Query Frame = 0
Query:   24 EDVDLDFFVKRSGDDIIENGNTPEPYLIIIAYLGMVIFAAVSMGSWKFSEPKSVALYSRVLLSLGGMFVVALSTAACLGFISALSIPLTPLSVSVVPFLSLGIGIDDMIIFIY 136
            E +D+ +  +RS +D I+  +  E Y +II+Y  M I+ A+++G++K     ++ LYS+  L++GG+ +V  S A  LG    L +P T L++ V+PFL L +G+D++ I ++
Sbjct:  572 EHMDIAYSAERSIEDAIDELSQGETYTVIISYSVMFIYVAIALGNFK--NFGTILLYSKFTLAIGGIVIVLSSVACSLGIFGFLDLPTTMLTIEVIPFLVLAVGVDNLFILVH 682          
BLAST of mRNA_Ecto-sp9_F_contig9043.17235.1 vs.
Match: SSD (domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5HIE8_9HEMI)

HSP 1 Score: 75.9 bits (185), Expect = 2.920e-13
Identity = 40/112 (35.71%), Postives = 71/112 (63.39%), Query Frame = 0
Query:   26 VDLDFFVKRSGDDIIENGNTPEPYLIIIAYLGMVIFAAVSMGSWKFSEPKSVALYSRVLLSLGGMFVVALSTAACLGFISALSIPLTPLSVSVVPFLSLGIGIDDMIIFIYT 137
            +D+ F  +RS  D +E  +  E Y I+I+Y+ M ++ ++++GS+  S  + + + S+++L LGG+FVV LS A+ +G    L  P + L + V+PFL L +G+D+M I + T
Sbjct:  301 MDMAFRSERSIQDELERESETEVYTIVISYILMFVYISLALGSYS-SFDRMLFVNSKIMLGLGGVFVVLLSVASAVGIFGYLGTPTSLLIIEVIPFLVLAVGVDNMFILVKT 411          
BLAST of mRNA_Ecto-sp9_F_contig9043.17235.1 vs.
Match: Patched (like n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UYX2_MONBE)

HSP 1 Score: 75.1 bits (183), Expect = 5.660e-13
Identity = 45/125 (36.00%), Postives = 74/125 (59.20%), Query Frame = 0
Query:    9 FEGEAGSGFGEGETFEDVDLDFFVKRSGDDIIENGNTPEPYLIIIAYLGMVIFAAVSMGSWKFSEPKSVALYSRVLLSLGGMFVVALSTAACLGFISALSIPLTPLSVSVVPFLSLGIGIDDMII 133
            ++G +G+ F     F   +  +  +RS DD IE+ +  +  L++ A + +  +AA+SM S         A+Y+ V L + G+ V+AL TAA LGF   + +   PLS++VVPF+S+GIG+DDM +
Sbjct:  821 YQGASGTAFAADSNFSSDNFLYLTERSVDDTIEDASHIDTALVVGAAVVVAFWAALSMVSIY------SAVYTHVFLGIWGVIVIALGTAAGLGFSVFIGLDFNPLSLAVVPFMSVGIGVDDMFV 939          
BLAST of mRNA_Ecto-sp9_F_contig9043.17235.1 vs.
Match: SSD (domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TWB0_SALR5)

HSP 1 Score: 74.3 bits (181), Expect = 1.060e-12
Identity = 45/135 (33.33%), Postives = 73/135 (54.07%), Query Frame = 0
Query:    1 MVDDMTPRFEGEAGSGFGEGETFEDVDLDFFVKRSGDDIIENGNTPEPYLIIIAYLGMVIFAAVSMGSWKFSEPKSVALYSRVLLSLGGMFVVALSTAACLGFISALSIPLTPLSVSVVPFLSLGIGIDDMIIFI 135
            M+  + P ++ EAG+G+   E F    +DF   RS  D+++     +  L+I A  G+V+ A ++   +        ++YS   L++ GM VV  +  A LG      +  TP+S SVVPFL+LGIG+DDM + +
Sbjct:  874 MIAYLEPLYKAEAGTGYASNEPFASEHVDFQTGRSTSDVVDEAGEADIELLIAA--GVVLAAYIAFSIYNLWS----SVYSHAALAVWGMLVVGGAIFAALGLSLYFGVTFTPVSTSVVPFLALGIGVDDMFVLL 1002          
BLAST of mRNA_Ecto-sp9_F_contig9043.17235.1 vs.
Match: SSD (domain-containing protein n=1 Tax=Apolygus lucorum TaxID=248454 RepID=A0A6A4J7K8_APOLU)

HSP 1 Score: 73.9 bits (180), Expect = 1.420e-12
Identity = 37/117 (31.62%), Postives = 71/117 (60.68%), Query Frame = 0
Query:   26 VDLDFFVKRSGDDIIENGNTPEPYLIIIAYLGMVIFAAVSMGSWKFSEPKSVALYSRVLLSLGGMFVVALSTAACLGFISALSIPLTPLSVSVVPFLSLGIGIDDMIIFIYTLVSGI 142
            +D+ F  +RS  D +   +    Y I+I+Y+ M ++  V++GS++ S  +   + S+++L LGG+ VV LS ++ +G    + +P T L++ V+PFL L +G+D+M I + T +  +
Sbjct:  585 MDISFRAERSIQDELVRESAAAVYTIVISYILMFVYITVALGSYR-SFDRMFFVNSKIMLGLGGVLVVLLSVSSSIGIFGYVGLPTTLLTIEVIPFLVLAVGVDNMFILVKTFMENV 700          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9043.17235.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
SSD2.940e-8398.55domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
SSD1.960e-7897.84domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Hypothetical1.520e-1545.54protein n=1 Tax=Coccolithus braarudii TaxID=221442... [more]
protein8.690e-1434.06patched homolog 2-like isoform X1 n=5 Tax=Selagine... [more]
SSD1.210e-1334.81domain-containing protein n=1 Tax=Salpingoeca rose... [more]
NPC1.620e-1334.51intracellular cholesterol transporter 1 homolog 1b... [more]
SSD2.920e-1335.71domain-containing protein n=1 Tax=Nesidiocoris ten... [more]
Patched5.660e-1336.00like n=1 Tax=Monosiga brevicollis TaxID=81824 RepI... [more]
SSD1.060e-1233.33domain-containing protein n=1 Tax=Salpingoeca rose... [more]
SSD1.420e-1231.62domain-containing protein n=1 Tax=Apolygus lucorum... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003392Protein patched/dispatchedPFAMPF02460Patchedcoord: 7..134
e-value: 1.3E-11
score: 43.4
NoneNo IPR availablePANTHERPTHR46022:SF1PROTEIN PATCHEDcoord: 27..137
NoneNo IPR availablePANTHERPTHR46022FAMILY NOT NAMEDcoord: 27..137
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 118..139
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 83..106
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..48
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 49..71
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 140..142
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 107..117
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 72..82
NoneNo IPR availableSUPERFAMILY82866Multidrug efflux transporter AcrB transmembrane domaincoord: 38..136
NoneNo IPR availableTMHMMTMhelixcoord: 49..71
NoneNo IPR availableTMHMMTMhelixcoord: 84..106
NoneNo IPR availableTMHMMTMhelixcoord: 116..138
IPR000731Sterol-sensing domainPROSITEPS50156SSDcoord: 47..142
score: 15.769

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9043contigEcto-sp9_F_contig9043:4277..4705 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9043.17235.1mRNA_Ecto-sp9_F_contig9043.17235.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9043 4256..4705 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9043.17235.1 ID=prot_Ecto-sp9_F_contig9043.17235.1|Name=mRNA_Ecto-sp9_F_contig9043.17235.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=143bp
MVDDMTPRFEGEAGSGFGEGETFEDVDLDFFVKRSGDDIIENGNTPEPYL
IIIAYLGMVIFAAVSMGSWKFSEPKSVALYSRVLLSLGGMFVVALSTAAC
LGFISALSIPLTPLSVSVVPFLSLGIGIDDMIIFIYTLVSGI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003392Ptc/Disp
IPR000731SSD