prot_Ecto-sp9_F_contig9020.17217.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig9020.17217.1
Unique Name	prot_Ecto-sp9_F_contig9020.17217.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	222

Homology

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BLAST of mRNA_Ecto-sp9_F_contig9020.17217.1 vs.
Match: Light (harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 413 bits (1061), Expect = 1.990e-145
Identity = 215/221 (97.29%), Postives = 218/221 (98.64%), Query Frame = 0

Query:    1 MVATQLFLGSAATLIASSAAFVAPMAVRSAAPASSSSAALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEEALDVMKTKELNNGRLAMIGIAGMLVQELVNPADILG 221
            MVATQLFLGSAATLIASS AFVAPMAVRSAAPASSSSA LKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGV+VAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKP+DE ALDVMKTKELNNGRLAMIGIAGMLVQEL+NPADILG
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSA-LKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220

[Close]

BLAST of mRNA_Ecto-sp9_F_contig9020.17217.1 vs.
Match: Light (harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 370 bits (950), Expect = 1.890e-128
Identity = 191/220 (86.82%), Postives = 206/220 (93.64%), Query Frame = 0

Query:    1 MVATQLFLGSAATLIASSAAFVAPMAVRSAAPASSSSAALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEEALDVMKTKELNNGRLAMIGIAGMLVQELVNPADIL 220
            MVA+Q+FLG+AA LIASS AFVAP+AVRSAAPAS++SA LKMSAGSDYVATLPGAPF DGKIFDPL+LSDGA P DIKKWREAEIKHGRVAMLASLG++VAE+YHPLFMG D+IGPA+ HFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKEDY+PGDLGFDPLNLKPD E ALDVMKTKELNNGRLAMIGIAGML QELVN  DIL
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASA-LKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219

[Close]

BLAST of mRNA_Ecto-sp9_F_contig9020.17217.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 360 bits (925), Expect = 1.100e-124
Identity = 185/218 (84.86%), Postives = 201/218 (92.20%), Query Frame = 0

Query:    4 TQLFLGSAATLIASSAAFVAPMAVRSAAPASSSSAALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEEALDVMKTKELNNGRLAMIGIAGMLVQELVNPADILG 221
            + +FLG+AATLIASS AFVAPMAVRSAAPASS+SA LKMSAGSDYVATLPGAPFGDGKIFDPL LSDGA+P +IK WREAEIKHGRVAMLA++GVIVAEQYHPLFMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTI  A+  PS VTGEGGL+++Y PGDLGFDPLNLKP D+  L+ M+TKELNNGRLAMIGIAGMLVQELVNPADILG
Sbjct:    5 SNMFLGTAATLIASSTAFVAPMAVRSAAPASSASA-LKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221

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BLAST of mRNA_Ecto-sp9_F_contig9020.17217.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 320 bits (820), Expect = 9.650e-109
Identity = 165/218 (75.69%), Postives = 190/218 (87.16%), Query Frame = 0

Query:    4 TQLFLGSAATLIASSAAFVAPMAVRSAAPASSSSAALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEEALDVMKTKELNNGRLAMIGIAGMLVQELVNPADILG 221
            + +FLG+AATLIASSAAFV PMAVRSAAPASS+SA LKMSAG+DY+ATLPGA   +GKIFD L L+DGADP +IK WREAEIKHGRVAMLA++GV+VAEQYHP FMGPDYIGPAVDHFQEI+A++P+FW +SLLGMAFIEYNTI  A+  PS VTGEGGL+++Y PGDLGFDP  +KP D+  L+ M+ KELNNGRLAMIGI GMLVQELVN  DILG
Sbjct:    5 SNMFLGTAATLIASSAAFVTPMAVRSAAPASSASA-LKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218

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BLAST of mRNA_Ecto-sp9_F_contig9020.17217.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 311 bits (796), Expect = 2.030e-105
Identity = 149/161 (92.55%), Postives = 154/161 (95.65%), Query Frame = 0

Query:   61 KIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEEALDVMKTKELNNGRLAMIGIAGMLVQELVNPADILG 221
            +IFDPL LSDGA P DIKKWREAEIKHGRVAMLASLGVIVAEQYHP FMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAF+EYNTIMTAF+TPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDE ALDVMKTKELNNGRLAMIGIAGML QELVNPADILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196

[Close]

BLAST of mRNA_Ecto-sp9_F_contig9020.17217.1 vs.
Match: LHCP (protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 1.020e-104
Identity = 171/221 (77.38%), Postives = 178/221 (80.54%), Query Frame = 0

Query:    1 MVATQLFLGSAATLIASSAAFVAPMAVRSAAPASSSSAALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEEALDVMKTKELNNGRLAMIGIAGMLVQELVNPADILG 221
            MVA+Q+F+G+AATLIASS AFVAPMAVRS    + SS  LKMSAGSDYVATLPGAPF DGKIFDPL LSDGA P DIKKWREAEIKHGRVAMLASLGVIVAE                            FW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDE ALDVMKTKELNNGRLAMIGIAGML QELVNPADILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSV-TTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192

[Close]

BLAST of mRNA_Ecto-sp9_F_contig9020.17217.1 vs.
Match: LHCP (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 313 bits (802), Expect = 1.740e-103
Identity = 196/392 (50.00%), Postives = 207/392 (52.81%), Query Frame = 0

Query:    1 MVATQLFLGSAATLIASSAAFVAPMAVRSAAPASSSSAALKMSAGSDYVATLPGAPFGDGK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEEALDVMKTKELNNGRLAMIGIAGMLVQELVNPADILG 221
            MVA+Q+F+G+AATLIASS AFVAP+AVRS A  + SS++L MSAGSDYVATLPGAPF DGK                                                                                                                                                                           IFDPL LSDGA P DIKKWREAEIKHGRVAMLASLGVIVAEQYHP FMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDE ALDVMKTKELNNGRLAMIGIAGML QELVNPADILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392

[Close]

BLAST of mRNA_Ecto-sp9_F_contig9020.17217.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 271 bits (692), Expect = 1.680e-88
Identity = 137/218 (62.84%), Postives = 169/218 (77.52%), Query Frame = 0

Query:    4 TQLFLGSAATLIASSAAFVAPMAVRSAAPASSSSAALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEEALDVMKTKELNNGRLAMIGIAGMLVQELVNPADILG 221
            T   +G A+   AS  AF+ P     +A  +S++A  +MSAGSDYV+TLPGAPF DGK++DP+ LS  ADP DIKKWREAEIKHGRVAMLAS+GV+VAE +HPLF+GPDYIGPA+ HF+EI+A++P+FW  +LL +A++EY  I   F     VTGEGG++ DYVPGDLGFDPL L P+DE  L+VMKTKELN+GRLAMIGI GM+VQELV P  I G
Sbjct:   56 TGALVGMASWCFASCEAFIVPTPTTLSARPTSTAA--RMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271

[Close]

BLAST of mRNA_Ecto-sp9_F_contig9020.17217.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 9.950e-88
Identity = 126/160 (78.75%), Postives = 141/160 (88.12%), Query Frame = 0

Query:   61 KIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEEALDVMKTKELNNGRLAMIGIAGMLVQELVNPADIL 220
            KIFDPL L+DGA+  DIK WREAEIKHGRVAMLASLGV+VAE+YHP FMGPDYIGPAVDHFQEISA++PEFW FSLL +A IEYNTI  A+  PS VTGEGGL+++Y PGDLGFDPLNLKP D+ AL+ M+TKELNNGRLAMIGIAG LVQELVNP +IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174

[Close]

BLAST of mRNA_Ecto-sp9_F_contig9020.17217.1 vs.
Match: Light (harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 2.340e-79
Identity = 135/224 (60.27%), Postives = 170/224 (75.89%), Query Frame = 0

Query:    1 MVATQLFLGSAATLIASSAAFVAPMAV-RSAAPASSSSAALKMSAGSDYVATLPGAPFG---DGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEEALDVMKTKELNNGRLAMIGIAGMLVQELVNPADIL 220
            MV +QLFLG+AATLIASSAAFVAP+A  RS+    ++S+  KM+AGSDY A+LPGAPFG   +GK FDP  L+   DP  IKKWREAE+KHGRV+MLA++G++V+E +HPLFMGP YIGPAV+H Q+I+  YP FWV SL  +AFIE  TI  A+ T S VTG G LK +Y PGDLGFDPL L P D E   +++++EL+ GR AMIG+ GM+VQE+V+   IL
Sbjct:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig9020.17217.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig9020.17217.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Light	1.990e-145	97.29	harvesting complex protein n=2 Tax=Ectocarpus TaxI...	[more]
Light	1.890e-128	86.82	harvesting complex protein n=2 Tax=Ectocarpus TaxI...	[more]
Light	1.100e-124	84.86	harvesting complex protein n=1 Tax=Ectocarpus sili...	[more]
Light	9.650e-109	75.69	harvesting complex protein n=1 Tax=Ectocarpus sili...	[more]
Light	2.030e-105	92.55	harvesting complex protein n=1 Tax=Ectocarpus sili...	[more]
LHCP	1.020e-104	77.38	protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5...	[more]
LHCP	1.740e-103	50.00	protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Light	1.680e-88	62.84	harvesting complex protein n=1 Tax=Ectocarpus sili...	[more]
Light	9.950e-88	78.75	harvesting complex protein n=1 Tax=Ectocarpus sili...	[more]
Light	2.340e-79	60.27	harvesting complex protein n=2 Tax=Ectocarpus TaxI...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 42..221 e-value: 2.2E-38 score: 134.1
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 51..212 e-value: 4.3E-39 score: 134.6
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 11..215
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 36..221
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..5
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..35
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 6..17
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 18..35
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..20 score: 0.569
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 59..220
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 11..215

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig9020	contig	Ecto-sp9_F_contig9020:2160..4948 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig9020.17217.1	mRNA_Ecto-sp9_F_contig9020.17217.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig9020 2160..4948 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig9020.17217.1 ID=prot_Ecto-sp9_F_contig9020.17217.1|Name=mRNA_Ecto-sp9_F_contig9020.17217.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=222bp
MVATQLFLGSAATLIASSAAFVAPMAVRSAAPASSSSAALKMSAGSDYVA
TLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIV
AEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTA
FETPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEEALDVMKTKELNNGRL
AMIGIAGMLVQELVNPADILG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln