prot_Ecto-sp9_F_contig8994.17187.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig8994.17187.1
Unique Name	prot_Ecto-sp9_F_contig8994.17187.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	368

Homology

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BLAST of mRNA_Ecto-sp9_F_contig8994.17187.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM4_ECTSI)

HSP 1 Score: 665 bits (1716), Expect = 1.170e-234
Identity = 353/367 (96.19%), Postives = 358/367 (97.55%), Query Frame = 0

Query:    3 DTRGRRALGDGGRVSGEGGGARVDGGWENGSSLERRGGGLGSTEQAATVARSMGGWLWREKEGDGEERGVGEDGAGVGDGRRRALDGSERPGDLVRHQVTPPRQEGDEEEAPRHQKQTVAGSRPSLLPRHLDDGAGAAGA--EAELDAPVTEEEAREGADEEEAAEAAAALTREFPAMVVPKVAVATDGQESGPLPSQWYNLRKEYGKGCLFLLTLQTVEEDKGWDDDGIIGAVGEEGGDEAANARKPLADLMRGEMVGVNCDFSAVIEVQLSPSTLRTAQSQAVSYSVVFTVVCLLQMCLLCCRVGLMLAQRRYGRNFMVPQRFQPPKFDYHRPIPPELVEQAQTETAGGQPSEESRDLEAGNCLE 367
            DTRGRRALGDG RVS EGGG RVDGGWENGSSLERRGGGLGSTEQAATVARSMGGWLWREKEGDGEERGVGEDGAGVG+GRRRALDGSERPGDLVRHQ+TP RQEGDEEEAPRHQKQTVAGSRPSLL RHLDDGAGAAGA  EAELDAPVTEEEAREGADEEEA EA AALTREFPAMVVPKVAVATDGQESGPLPSQWYNLRKEYG+GCLFLLTLQTVEEDKGWDDDGIIGAVGEEGGDEAANARKPLADLMRGEMVGVNCDFSAVIEVQLSPSTLRTAQSQAV+YSVVFT+VCLLQMCLLCCRVGLMLAQRRYGRNFMVPQRFQPPKFDYHRPIPPELVEQAQTETAGGQPSEESRDLEAGNCLE
Sbjct:  356 DTRGRRALGDGDRVSEEGGGERVDGGWENGSSLERRGGGLGSTEQAATVARSMGGWLWREKEGDGEERGVGEDGAGVGEGRRRALDGSERPGDLVRHQLTPQRQEGDEEEAPRHQKQTVAGSRPSLLARHLDDGAGAAGAAAEAELDAPVTEEEAREGADEEEAGEAVAALTREFPAMVVPKVAVATDGQESGPLPSQWYNLRKEYGQGCLFLLTLQTVEEDKGWDDDGIIGAVGEEGGDEAANARKPLADLMRGEMVGVNCDFSAVIEVQLSPSTLRTAQSQAVNYSVVFTMVCLLQMCLLCCRVGLMLAQRRYGRNFMVPQRFQPPKFDYHRPIPPELVEQAQTETAGGQPSEESRDLEAGNCLE 722

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BLAST of mRNA_Ecto-sp9_F_contig8994.17187.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM9_9PHAE)

HSP 1 Score: 603 bits (1556), Expect = 7.950e-210
Identity = 329/371 (88.68%), Postives = 344/371 (92.72%), Query Frame = 0

Query:    2 GDTRGRRALGDGGRVSGEGGGARVDGGWENGSSLERRGGGLGSTEQAATVARSMGGWLWREKEGDGEERGVGEDGAGVGDGRRRALDGSERPGDLVRHQVTPPRQEGDEEEAPRHQKQTVAGSRPSLLPRHLDDGAGAAGA-----EAELDAPVTEEEAREGADEEEAAEAAAALTREFPAMVVPKVAVATDGQESGPLPSQWYNLRKEYGKGCLFLLTLQTVEEDKGWDDDGIIGAVGEEGGDEAANARKPLADLMRGEMVGVNCDFSAVIEVQLSPSTLRTAQSQAVSYSVVFTVVCLLQMCLLCCRVGLMLAQRRYGRNFMVPQRFQPPKFDYHRPIPPELVEQAQTETAGGQPSEESRDLEAGNCLE 367
            GDTRGRRALGDGGRVS EGGGARVDGGWE+GSSLE RGGGLGSTEQAATVARSMGG LWREKEG GEERGV EDGAGVG GRRRALDG ERP DLVRH+ TP RQEGDE EAPRH+K+TVAGSR SLLPRHLDDGAGAAGA     EAELDAPVTEE AREGADEEEA EAAAAL REFPAMVVPKVAVA + QESGPLPSQWY+LRKEYG+GCLFLLTLQTVEEDKGW++D  IGAVGE+GGDEA+ ARKPLADLMRGEMVGVNCDFSAVIEVQLSPSTLRTAQSQAVSYSV+FT+VC+LQMCL CCRVGLMLAQRRYGRNFMVPQRFQPPKFDY RPIPPELVEQA+TETAGGQPSEESRDLEAGNCLE
Sbjct:  352 GDTRGRRALGDGGRVSREGGGARVDGGWESGSSLELRGGGLGSTEQAATVARSMGGRLWREKEGGGEERGVVEDGAGVGGGRRRALDGLERPVDLVRHRDTPQRQEGDETEAPRHRKETVAGSRSSLLPRHLDDGAGAAGAAGAVAEAELDAPVTEE-AREGADEEEAGEAAAALAREFPAMVVPKVAVAAESQESGPLPSQWYSLRKEYGQGCLFLLTLQTVEEDKGWNEDSFIGAVGEKGGDEASIARKPLADLMRGEMVGVNCDFSAVIEVQLSPSTLRTAQSQAVSYSVLFTMVCVLQMCLFCCRVGLMLAQRRYGRNFMVPQRFQPPKFDYRRPIPPELVEQARTETAGGQPSEESRDLEAGNCLE 721

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig8994.17187.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig8994.17187.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
Uncharacterized	1.170e-234	96.19	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
RING-type	7.950e-210	88.68	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 284..308
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 309..367
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..283
None	No IPR available	TMHMM	TMhelix		coord: 287..309

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig8994	contig	Ecto-sp9_F_contig8994:674..5653 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig8994.17187.1	mRNA_Ecto-sp9_F_contig8994.17187.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig8994 674..5653 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig8994.17187.1 ID=prot_Ecto-sp9_F_contig8994.17187.1|Name=mRNA_Ecto-sp9_F_contig8994.17187.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=368bp
GGDTRGRRALGDGGRVSGEGGGARVDGGWENGSSLERRGGGLGSTEQAAT
VARSMGGWLWREKEGDGEERGVGEDGAGVGDGRRRALDGSERPGDLVRHQ
VTPPRQEGDEEEAPRHQKQTVAGSRPSLLPRHLDDGAGAAGAEAELDAPV
TEEEAREGADEEEAAEAAAALTREFPAMVVPKVAVATDGQESGPLPSQWY
NLRKEYGKGCLFLLTLQTVEEDKGWDDDGIIGAVGEEGGDEAANARKPLA
DLMRGEMVGVNCDFSAVIEVQLSPSTLRTAQSQAVSYSVVFTVVCLLQMC
LLCCRVGLMLAQRRYGRNFMVPQRFQPPKFDYHRPIPPELVEQAQTETAG
GQPSEESRDLEAGNCLE*