prot_Ecto-sp9_F_contig8980.17176.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig8980.17176.1
Unique Nameprot_Ecto-sp9_F_contig8980.17176.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length206
Homology
BLAST of mRNA_Ecto-sp9_F_contig8980.17176.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 7.910e-38
Identity = 95/235 (40.43%), Postives = 129/235 (54.89%), Query Frame = 0
Query:    1 WVGDSGASVHGTSSRCHMYNTRPPTAAEQFLLIGNGASMEVVCMGSLDLLLLCDTTVRLTLTNVAYVPGLEYDLMSFNLLQDEYDILLNKHGASMMDGTVHFVK--DGGHGQSSGDG-GIS---------RTRRDASGGFGQSSVSGG--------------GHWFTV---FCDGCTVGKGIRKAISKTTSSTASRPLQRLFADLTGPLPPSAGGATYCLAVVDDNTNYGIVKFI 206
            W+GDS ++VH TS   H+YNTRPP A E FL IG+G  ++  C GSLD++  C   V +T+ ++A VP L +DL+S N++Q+ +D+LLN  G  +++G VHF K   G + Q++    G S         R  R  S       VS G              G   T    +C GC   K IR+++ K T + A RP  RLF DLTGP PPS GGA YC+ VVDD +N G   F+
Sbjct:   16 WIGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCREDVLVTMKDIAVVPDLAFDLVSLNVIQETHDLLLNSAGTWILNGRVHFSKLPTGNYIQATRIAHGASPPAMVAATVRPGRPRSININDLHVSLGHTNDANARETAKQLGIQVTGTRGYCAGCGEAKAIRRSVPKETKAKAGRPFGRLFIDLTGPYPPSTGGARYCMMVVDDYSNVGWTLFL 250          
BLAST of mRNA_Ecto-sp9_F_contig8980.17176.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT8_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.730e-28
Identity = 59/64 (92.19%), Postives = 59/64 (92.19%), Query Frame = 0
Query:  143 FCDGCTVGKGIRKAISKTTSSTASRPLQRLFADLTGPLPPSAGGATYCLAVVDDNTNYGIVKFI 206
            FCDGC VGKGIRKAIS TTSST SRPLQRL ADLTGPLPPSAGG TYCLAVVDDNTNYGIVKFI
Sbjct:  184 FCDGCAVGKGIRKAISTTTSSTVSRPLQRLLADLTGPLPPSAGGDTYCLAVVDDNTNYGIVKFI 247          
BLAST of mRNA_Ecto-sp9_F_contig8980.17176.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL30_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 5.440e-23
Identity = 55/64 (85.94%), Postives = 56/64 (87.50%), Query Frame = 0
Query:  143 FCDGCTVGKGIRKAISKTTSSTASRPLQRLFADLTGPLPPSAGGATYCLAVVDDNTNYGIVKFI 206
            F DGC VGKGIRKAIS TTSSTASRPLQRLFADLTGPLPPSAGG TYCLA+VDDN    IVKFI
Sbjct:   48 FSDGCAVGKGIRKAISTTTSSTASRPLQRLFADLTGPLPPSAGGTTYCLALVDDN-QLRIVKFI 110          
BLAST of mRNA_Ecto-sp9_F_contig8980.17176.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFW0_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 6.880e-21
Identity = 46/65 (70.77%), Postives = 55/65 (84.62%), Query Frame = 0
Query:  142 VFCDGCTVGKGIRKAISKTTSSTASRPLQRLFADLTGPLPPSAGGATYCLAVVDDNTNYGIVKFI 206
            VFC GC VGKGIRKAI++TTSSTA+RPLQR FADL GPLP SA G+ Y L +VDD TN+G++KF+
Sbjct:  100 VFCGGCAVGKGIRKAIARTTSSTAARPLQRFFADLAGPLPRSAAGSAYVLCIVDDCTNFGVLKFL 164          
BLAST of mRNA_Ecto-sp9_F_contig8980.17176.1 vs.
Match: Reverse (transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C4_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.160e-19
Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 0
Query:  142 VFCDGCTVGKGIRKAISKTTSSTASRPLQRLFADLTGPLPPSAGGATYCLAVVDDNTNYGIVKFI 206
            VFC  C VGKGIRK I++TTSSTA RPLQ  FADL GPLP SAGG+TY L +VDD TN+G++KF+
Sbjct:  107 VFCGWCAVGKGIRKVIARTTSSTAVRPLQLFFADLAGPLPRSAGGSTYVLCIVDDCTNFGVLKFL 171          
BLAST of mRNA_Ecto-sp9_F_contig8980.17176.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID9_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.060e-19
Identity = 48/64 (75.00%), Postives = 51/64 (79.69%), Query Frame = 0
Query:  143 FCDGCTVGKGIRKAISKTTSSTASRPLQRLFADLTGPLPPSAGGATYCLAVVDDNTNYGIVKFI 206
            FCDGC VGK IRKA S TT+STASRPLQRLFADLTG LP S GGATY L +VDD TN GI K +
Sbjct:  208 FCDGCAVGKDIRKAFSTTTTSTASRPLQRLFADLTGQLPASTGGATYYLVLVDDYTNDGITKLM 271          
BLAST of mRNA_Ecto-sp9_F_contig8980.17176.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D3_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.430e-11
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 0
Query:  143 FCDGCTVGKGIRKAISKTTSSTASRPLQRLFADLTGPLPPSAGGATYCLAVVDDNTNYGIVKFI 206
            +C GC   K IR+++ K T + A RP  R+F DLTGP PPS GGA YC+ VVDD +N G   F+
Sbjct:   48 YCAGCGEAKAIRRSVPKETKAKAGRPFGRVFIDLTGPYPPSTGGARYCMMVVDDYSNVGWTLFL 111          
BLAST of mRNA_Ecto-sp9_F_contig8980.17176.1 vs.
Match: Integrase (catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H9_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.590e-11
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 0
Query:  143 FCDGCTVGKGIRKAISKTTSSTASRPLQRLFADLTGPLPPSAGGATYCLAVVDDNTNYGIVKFI 206
            +C GC V K IR+++   T + A RP  R F DLTGP PPS GGA YC+ VVDD +N G   F+
Sbjct:  239 YCAGCGVAKAIRRSVPMETKAKAERPFGRAFIDLTGPYPPSTGGARYCMMVVDDYSNVGWTLFL 302          
BLAST of mRNA_Ecto-sp9_F_contig8980.17176.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM9_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 9.220e-11
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 0
Query:  143 FCDGCTVGKGIRKAISKTTSSTASRPLQRLFADLTGPLPPSAGGATYCLAVVDDNTNYGIVKFI 206
            +C GC   K IR+++ K   + A RP  R+F DLTGP PPS GGA YC+ VVDD +N G   F+
Sbjct:   48 YCAGCGEAKAIRRSVPKEPQTKAGRPFGRVFIDLTGPYPPSTGGARYCMMVVDDYSNVGWTLFL 111          
BLAST of mRNA_Ecto-sp9_F_contig8980.17176.1 vs.
Match: Retrovirus-related (Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YZ05_LYGHE)

HSP 1 Score: 58.2 bits (139), Expect = 1.860e-6
Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 0
Query:  143 FCDGCTVGKGIRKAISKTTSSTASRPLQRLFADLTGPLP-PSAGGATYCLAVVDDNTNYGIVKFI 206
            FCDGC +GK  R       S  AS+P +R+F+DL GP+P PS GGA Y +   DD + Y +V F+
Sbjct:  450 FCDGCAIGKQHRLPFVSGNSWKASKPGERIFSDLCGPMPEPSLGGAHYFILFKDDCSGYRVVFFL 514          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8980.17176.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
Integrase7.910e-3840.43catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Integrase2.730e-2892.19catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Integrase5.440e-2385.94catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Integrase6.880e-2170.77catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Reverse2.160e-1969.23transcriptase Ty1/copia-type domain-containing pro... [more]
Uncharacterized3.060e-1975.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Integrase1.430e-1151.56catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Integrase2.590e-1151.56catalytic domain-containing protein (Fragment) n=1... [more]
Integrase9.220e-1150.00catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Retrovirus-related1.860e-646.15Pol polyprotein from transposon TNT 1-94 (Fragment... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 158..206
e-value: 2.1E-5
score: 25.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8980contigEcto-sp9_F_contig8980:4374..5518 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8980.17176.1mRNA_Ecto-sp9_F_contig8980.17176.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig8980 4374..5518 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig8980.17176.1 ID=prot_Ecto-sp9_F_contig8980.17176.1|Name=mRNA_Ecto-sp9_F_contig8980.17176.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=206bp
WVGDSGASVHGTSSRCHMYNTRPPTAAEQFLLIGNGASMEVVCMGSLDLL
LLCDTTVRLTLTNVAYVPGLEYDLMSFNLLQDEYDILLNKHGASMMDGTV
HFVKDGGHGQSSGDGGISRTRRDASGGFGQSSVSGGGHWFTVFCDGCTVG
KGIRKAISKTTSSTASRPLQRLFADLTGPLPPSAGGATYCLAVVDDNTNY
GIVKFI
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf