prot_Ecto-sp9_F_contig8976.17170.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig8976.17170.1
Unique Name	prot_Ecto-sp9_F_contig8976.17170.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	220

Homology

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BLAST of mRNA_Ecto-sp9_F_contig8976.17170.1 vs.
Match: Chlorophyll (binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU4_ECTSI)

HSP 1 Score: 433 bits (1114), Expect = 1.470e-153
Identity = 218/219 (99.54%), Postives = 219/219 (100.00%), Query Frame = 0

Query:    1 MKCTIAMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQDRFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKIVGDTIGNVFTF 219
            MKCTIAMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQ+RFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKIVGDTIGNVFTF
Sbjct:    1 MKCTIAMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKIVGDTIGNVFTF 219

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BLAST of mRNA_Ecto-sp9_F_contig8976.17170.1 vs.
Match: Light (harvesting protein lhcf3 (Fragment) n=1 Tax=Saccharina latissima TaxID=309358 RepID=Q9FEP5_SACLA)

HSP 1 Score: 323 bits (829), Expect = 1.830e-110
Identity = 154/191 (80.63%), Postives = 177/191 (92.67%), Query Frame = 0

Query:   23 AFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQDRFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNF--ETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKIVGD 211
            AFNGA++ATRA++SSAMKMSFENELG Q PLG+WDPLYWLE+ADQ+RFDRLRYVEIKHGRICMLAILGHI QENVRLPG L+F  +  FADMPNGL A+SKMGP GVAQIV FIGFLE+FVMKQKEGSFPGDMSR+NPFEKQW+SFDEETKLRKRAIELNNGRAAQMGIF L++HE+++ +PY+IN ++G+
Sbjct:    1 AFNGASMATRAKTSSAMKMSFENELGVQAPLGYWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHIVQENVRLPGMLSFSNDQSFADMPNGLGALSKMGPIGVAQIVIFIGFLEVFVMKQKEGSFPGDMSRVNPFEKQWDSFDEETKLRKRAIELNNGRAAQMGIFGLIVHEVINNQPYVINNLLGE 191

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BLAST of mRNA_Ecto-sp9_F_contig8976.17170.1 vs.
Match: LHCP (protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 6.920e-92
Identity = 145/207 (70.05%), Postives = 169/207 (81.64%), Query Frame = 0

Query:    7 MLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQDRFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKIVG 210
            M  ACAA ANAFVAPSAFNGAAVAT A+SSSAMKMSFE+E+GAQPPLGFWDPL  L DADQ+RF+RLRYVE+KHGRI MLAI GH+TQ+NVRLPG L+      FADMPNG+ A+SK+ P G+AQI AF+GFLEL VMK  EGSFPGD +   NPF   W++  EET+  KRAIELNNGRAAQMGI AL++HE L+ +PYIIN ++G
Sbjct:    6 MALACAASANAFVAPSAFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLG 212

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BLAST of mRNA_Ecto-sp9_F_contig8976.17170.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 2.630e-85
Identity = 132/192 (68.75%), Postives = 158/192 (82.29%), Query Frame = 0

Query:   22 SAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQDRFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLN--FETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKIVG 210
            SAFNGAAVAT A+SSSAMKMSFE+E+GAQPPLGFWDPL  L DADQ+RF+RLRYVE+KHGRI MLAI GH+TQ+NVRLPG L+   +  FADMPNG+ A+SK+ P G+AQI AF+GFLEL VMK  EGSFPGD +   NPF   W++  EET+  KRAIELNNGRAAQMGI AL++HE L+ +PY+IN ++G
Sbjct:   24 SAFNGAAVATSAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLG 215

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BLAST of mRNA_Ecto-sp9_F_contig8976.17170.1 vs.
Match: Light (harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIR0_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 4.470e-84
Identity = 139/219 (63.47%), Postives = 167/219 (76.26%), Query Frame = 0

Query:    1 MKCTIAM---LAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWL-EDADQDRFDRLRYVEIKHGRICMLAILGHITQENVRLPGNL--NFETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKIVGDTI 213
            MK   AM   +AACAA A+AFVAPSAF GA++     +SS+MKMSFE E+GAQ P+G+WDPL  L +D  Q+RFDRLRYVEIKHGRI MLAILGHIT +N R PG L  + +  FAD PNGL AISK+  +G+ QI  FIGFLE  VM QKEGSFPGDMS INPFEK+WES+ EE +  KRAIELNNGRAAQMGI  L++HE ++  PY+IN+I+G  +
Sbjct:    1 MKTACAMAAGVAACAATASAFVAPSAFKGASLTAAKPASSSMKMSFETEIGAQAPIGYWDPLGLLTKDPSQERFDRLRYVEIKHGRIAMLAILGHITAQNFRFPGMLAPSADLSFADCPNGLAAISKIPLYGLIQIFLFIGFLETKVMLQKEGSFPGDMSLINPFEKEWESWTEEEQATKRAIELNNGRAAQMGILGLMVHEQINNTPYVINEILGSHV 219

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BLAST of mRNA_Ecto-sp9_F_contig8976.17170.1 vs.
Match: Fucoxanthin-chlorophyll (a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 255 bits (651), Expect = 4.380e-83
Identity = 134/208 (64.42%), Postives = 161/208 (77.40%), Query Frame = 0

Query:    6 AMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQDRFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKIVG 210
            A++A   A A  F  PSAFNGAA+ T A++ SAMKMSFE+E+GAQ PLGFWDPL  L DADQ+RF+RLRYVE+KHGRI MLAI GH+TQ+N RLPG L+      FADMPNG+ A+SK+ P G+AQI AFIGFLEL VMK  EGSFPGD +   NPF   W++  EET+  KRAIELNNGRAAQMGI AL++HE L+ +PY+IN +VG
Sbjct:    4 AVMAVACAAAPGFRGPSAFNGAALTTSAKACSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVG 211

[Close]

BLAST of mRNA_Ecto-sp9_F_contig8976.17170.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 3.040e-82
Identity = 132/191 (69.11%), Postives = 156/191 (81.68%), Query Frame = 0

Query:   23 AFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQDRFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKIVG 210
            AFNGAAVAT A+SSSAMKMSFE+E+GAQPPLGFWDPL  LEDADQ+RF+RLRYVE+KHGRI MLAI GH+TQ+N RLPG L+      FADMPNG+ A+SK+ P G+AQI AFIGFLEL VMK  EGSFPGD +   NPF   W++  EET+  KRAIELNNGRAAQMGI AL++HE L+ +PY+IN ++G
Sbjct:  181 AFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLG 371

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BLAST of mRNA_Ecto-sp9_F_contig8976.17170.1 vs.
Match: Fucoxanthin-chlorophyll (a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 248 bits (633), Expect = 2.300e-80
Identity = 128/193 (66.32%), Postives = 152/193 (78.76%), Query Frame = 0

Query:   21 PSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQDRFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKIVG 210
            PSAFNGAA+ T A+SSSAMKMSFE+E+GAQ PLGFWDPL  LEDADQD F+RLRYVE+K GRI MLAI GH+TQ+N RLPG L+      FADMPNG+ A+SK+ P G+AQI  FIGFLEL VMK  EGSFPGD +   NPF   W++   ET+  KRAIELNNGRAAQMGI AL++HE L+ +PY+IN ++G
Sbjct:   18 PSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLG 210

[Close]

BLAST of mRNA_Ecto-sp9_F_contig8976.17170.1 vs.
Match: Fucoxanthin-chlorophyll (a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 248 bits (632), Expect = 2.760e-80
Identity = 127/193 (65.80%), Postives = 151/193 (78.24%), Query Frame = 0

Query:   21 PSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQDRFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGD-MSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKIVG 210
            PSAFNGAA++T A+SSSAMKMSFE+E+GAQ PLGFWDPL  L DADQ+RF+RLRYVE+KHGRI MLAI GH+TQ+N RLPG L+      FADMPNG+ A+SK+ P G+AQI  FIGFLEL VMK  EGSFPGD +   NPF   W+S   ET+  KRAIELNNGRAAQMGI  +++HE L  +PYI N ++G
Sbjct:   13 PSAFNGAALSTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLG 205

[Close]

BLAST of mRNA_Ecto-sp9_F_contig8976.17170.1 vs.
Match: Fucoxanthin-chlorophyll (a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 245 bits (625), Expect = 3.300e-79
Identity = 124/190 (65.26%), Postives = 150/190 (78.95%), Query Frame = 0

Query:   24 FNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQDRFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKIVG 210
            FNGAA+AT A+SSSAMKMSFE+E+GAQPP+GFWDPL  + DADQ+RFDRLRYVEIKHGRI MLA++GHITQ+N RLPG L+F+    FAD PNG+ A SK+ P G  QI+  IG  ELFV+KQ EGSFPGD +   N F+  W++  EET+  KRAIELNNGRAAQMGI A+++HE L  +PYIIN + G
Sbjct:   17 FNGAALATSAKSSSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAG 206

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig8976.17170.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig8976.17170.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Chlorophyll	1.470e-153	99.54	binding protein n=2 Tax=Ectocarpus TaxID=2879 RepI...	[more]
Light	1.830e-110	80.63	harvesting protein lhcf3 (Fragment) n=1 Tax=Saccha...	[more]
LHCP	6.920e-92	70.05	protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A...	[more]
Uncharacterized	2.630e-85	68.75	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Light	4.470e-84	63.47	harvesting complex protein n=2 Tax=Ectocarpus TaxI...	[more]
Fucoxanthin-chlorophyll	4.380e-83	64.42	a-c binding protein B, chloroplastic n=6 Tax=Phaeo...	[more]
Light	3.040e-82	69.11	harvesting complex protein n=1 Tax=Ectocarpus sili...	[more]
Fucoxanthin-chlorophyll	2.300e-80	66.32	a-c binding protein C, chloroplastic n=6 Tax=Phaeo...	[more]
Fucoxanthin-chlorophyll	2.760e-80	65.80	a-c binding protein F, chloroplastic (Fragment) n=...	[more]
Fucoxanthin-chlorophyll	3.300e-79	65.26	a-c binding protein E, chloroplastic n=3 Tax=Phaeo...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 42..212 e-value: 1.6E-21 score: 79.0
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 44..196 e-value: 1.8E-31 score: 109.8
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 17..201
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 122..141
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..33
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 34..121
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 16..33
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..15
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 142..219
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..17 score: 0.628
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 35..206
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 17..201

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig8976	contig	Ecto-sp9_F_contig8976:292..3251 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig8976.17170.1	mRNA_Ecto-sp9_F_contig8976.17170.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig8976 209..4633 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig8976.17170.1 ID=prot_Ecto-sp9_F_contig8976.17170.1|Name=mRNA_Ecto-sp9_F_contig8976.17170.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=220bp
MKCTIAMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQ
PPLGFWDPLYWLEDADQDRFDRLRYVEIKHGRICMLAILGHITQENVRLP
GNLNFETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFP
GDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDG
EPYIINKIVGDTIGNVFTF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln