prot_Ecto-sp9_F_contig8939.17124.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig8939.17124.1
Unique Nameprot_Ecto-sp9_F_contig8939.17124.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length139
Homology
BLAST of mRNA_Ecto-sp9_F_contig8939.17124.1 vs.
Match: Cytochrome (b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK16_ECTSI)

HSP 1 Score: 252 bits (643), Expect = 9.160e-83
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0
Query:    1 MFRNAVRRVAAPVALRAVATPAKAVVVPRAASACRPALSSRSLSAVTTTSSEVAPASYIGRAGEIDDLTNQDGYFEKDRVAKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
            MFRNAVRR AAPVALRAVATPAKAVVVPRAASACRPAL+SRSLSAVTTTSSEVAPASYIGRAGEIDDLTNQDGYFEKDRVAKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG
Sbjct:    1 MFRNAVRRAAAPVALRAVATPAKAVVVPRAASACRPALASRSLSAVTTTSSEVAPASYIGRAGEIDDLTNQDGYFEKDRVAKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139          
BLAST of mRNA_Ecto-sp9_F_contig8939.17124.1 vs.
Match: Cytochrome (b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WQS7_HETAK)

HSP 1 Score: 96.7 bits (239), Expect = 4.810e-22
Identity = 48/75 (64.00%), Postives = 63/75 (84.00%), Query Frame = 0
Query:   65 IDDLTNQDGYFEKDRVAKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
            +DD+++QD YFEKDR+AKG+  KREFTYFMLG SRF+YAS+ARL L+KF++S   +ADV+ALA+ E EL  +EMG
Sbjct:   42 VDDMSSQDHYFEKDRLAKGE-NKREFTYFMLGCSRFIYASAARLALIKFVSSMSASADVLALASVEVELGAVEMG 115          
BLAST of mRNA_Ecto-sp9_F_contig8939.17124.1 vs.
Match: Cytochrome (b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CB52_PYTIN)

HSP 1 Score: 96.3 bits (238), Expect = 5.820e-22
Identity = 45/84 (53.57%), Postives = 64/84 (76.19%), Query Frame = 0
Query:   56 ASYIGRAGEIDDLTNQDGYFEKDRVAKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
            A++  ++  +DD ++ D YFEKDR+A GDP KR FTYFMLG +R  YA++ARL ++KF+ S   +ADV+ALATAEF+L +I+ G
Sbjct:   25 AAFSTKSAVVDDFSSPDHYFEKDRIASGDPSKRAFTYFMLGGARVAYATAARLAVIKFVGSMSASADVLALATAEFDLSNIDEG 108          
BLAST of mRNA_Ecto-sp9_F_contig8939.17124.1 vs.
Match: Cytochrome (b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVF7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 6.540e-20
Identity = 42/75 (56.00%), Postives = 58/75 (77.33%), Query Frame = 0
Query:   65 IDDLTNQDGYFEKDRVAKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
            +DD ++ D YFEKDR+A GDP KR FTYF+LG +R  YA++ RL ++KF+ S   +ADV+ALATAEF+L +I+ G
Sbjct:   31 VDDYSSPDHYFEKDRIAPGDPSKRAFTYFLLGGARVAYATAGRLAVIKFVGSMSASADVLALATAEFDLSNIDEG 105          
BLAST of mRNA_Ecto-sp9_F_contig8939.17124.1 vs.
Match: Cytochrome (b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQL4_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 8.690e-20
Identity = 43/80 (53.75%), Postives = 63/80 (78.75%), Query Frame = 0
Query:   62 AGEIDDLTNQDGYFEKDRVAK--GDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
            AG +D + + D Y+EKD++ K  GDP KR+FTYF+LG +RF+YAS+ARL+ LKF+++   +ADV+ALA AEF++ DI +G
Sbjct:   40 AGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLG 119          
BLAST of mRNA_Ecto-sp9_F_contig8939.17124.1 vs.
Match: Cytochrome (b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Albugo TaxID=65356 RepID=F0W758_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.940e-19
Identity = 40/75 (53.33%), Postives = 58/75 (77.33%), Query Frame = 0
Query:   65 IDDLTNQDGYFEKDRVAKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
            +DD++  D YFE DR++ GDP +R FTYF+LG +R +YA++ARL ++KF+ S   +ADV+ALATAEF+L  I+ G
Sbjct:   34 VDDMSTPDHYFETDRISSGDPSRRAFTYFVLGGARIMYATAARLAVIKFVGSMSASADVLALATAEFDLSSIDEG 108          
BLAST of mRNA_Ecto-sp9_F_contig8939.17124.1 vs.
Match: Cytochrome (b-c1 complex subunit Rieske (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YJR4_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.450e-19
Identity = 50/98 (51.02%), Postives = 65/98 (66.33%), Query Frame = 0
Query:   50 SSEVAPA---SYIGRAGE-----IDDLTNQDGYFEKDRVAKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
            SS VAP    ++ GRA       +D   + D YFEKDR+  GDP KR FTYFMLG +R  YA++ARL ++KF+ S   +ADV+ALATAEF+L +I  G
Sbjct:    7 SSSVAPRCMQTFQGRAAMSSKAVVDTYESADHYFEKDRIDAGDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSNINEG 104          
BLAST of mRNA_Ecto-sp9_F_contig8939.17124.1 vs.
Match: Cytochrome (b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIU0_GLOUD)

HSP 1 Score: 88.6 bits (218), Expect = 5.060e-19
Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = 0
Query:   54 APASYIGRAGEIDDLTNQDGYFEKDRVAKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
            A A+ +     +D+  + D YFEKDR++ GDP KR FTYF+LG +R  YA++ RL ++KF+ S   +ADV+ALATAEF+L +I+ G
Sbjct:   20 ARAAGMSTKAAVDNFASPDHYFEKDRISAGDPSKRAFTYFLLGGARVAYATAGRLAVIKFVGSMSASADVLALATAEFDLSNIDEG 105          
BLAST of mRNA_Ecto-sp9_F_contig8939.17124.1 vs.
Match: Cytochrome (b-c1 complex subunit Rieske, mitochondrial n=10 Tax=Peronosporaceae TaxID=4777 RepID=W2M1B7_PHYPR)

HSP 1 Score: 87.8 bits (216), Expect = 9.600e-19
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 0
Query:   50 SSEVAPA---SYIGRA----GEIDDLTNQDGYFEKDRVAKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
            SS VAP    ++ GRA      +D   + D YFEKDR+  GDP KR FTYFMLG +R  YA++ARL ++KF+ S   +ADV+ALATAEF+L  I  G
Sbjct:    7 SSSVAPRCKQAFQGRALSSKALVDTYESPDHYFEKDRIDAGDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSSINEG 103          
BLAST of mRNA_Ecto-sp9_F_contig8939.17124.1 vs.
Match: Cytochrome (b-c1 complex subunit Rieske, mitochondrial n=13 Tax=Peronosporaceae TaxID=4777 RepID=H3GII1_PHYRM)

HSP 1 Score: 86.7 bits (213), Expect = 2.720e-18
Identity = 49/98 (50.00%), Postives = 65/98 (66.33%), Query Frame = 0
Query:   50 SSEVAPA---SYIGRAGE-----IDDLTNQDGYFEKDRVAKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
            SS VAP    ++ GRA       ++   + D YFEKDR+  GDP KR FTYFMLG +R  YA++ARL ++KF+ S   +ADV+ALATAEF+L +I  G
Sbjct:    7 SSSVAPRCTQAFQGRAAMSSKAVVETYESPDHYFEKDRIDAGDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSNINEG 104          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8939.17124.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Cytochrome9.160e-8398.56b-c1 complex subunit Rieske, mitochondrial n=1 Tax... [more]
Cytochrome4.810e-2264.00b-c1 complex subunit Rieske, mitochondrial n=1 Tax... [more]
Cytochrome5.820e-2253.57b-c1 complex subunit Rieske, mitochondrial n=2 Tax... [more]
Cytochrome6.540e-2056.00b-c1 complex subunit Rieske, mitochondrial n=1 Tax... [more]
Cytochrome8.690e-2053.75b-c1 complex subunit Rieske, mitochondrial n=2 Tax... [more]
Cytochrome1.940e-1953.33b-c1 complex subunit Rieske, mitochondrial n=2 Tax... [more]
Cytochrome2.450e-1951.02b-c1 complex subunit Rieske (Fragment) n=1 Tax=Phy... [more]
Cytochrome5.060e-1948.84b-c1 complex subunit Rieske, mitochondrial n=1 Tax... [more]
Cytochrome9.600e-1951.55b-c1 complex subunit Rieske, mitochondrial n=10 Ta... [more]
Cytochrome2.720e-1850.00b-c1 complex subunit Rieske, mitochondrial n=13 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004192Cytochrome b-c1 complex subunit Rieske, transmembrane domainPFAMPF02921UCR_TMcoord: 82..122
e-value: 9.4E-6
score: 26.0
IPR014349Rieske iron-sulphur proteinPANTHERPTHR10134CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIALcoord: 75..139
NoneNo IPR availablePANTHERPTHR10134:SF25coord: 75..139
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..139
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availableSUPERFAMILY81502ISP transmembrane anchorcoord: 76..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8939contigEcto-sp9_F_contig8939:1708..5594 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8939.17124.1mRNA_Ecto-sp9_F_contig8939.17124.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig8939 1708..5594 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig8939.17124.1 ID=prot_Ecto-sp9_F_contig8939.17124.1|Name=mRNA_Ecto-sp9_F_contig8939.17124.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=139bp
MFRNAVRRVAAPVALRAVATPAKAVVVPRAASACRPALSSRSLSAVTTTS
SEVAPASYIGRAGEIDDLTNQDGYFEKDRVAKGDPGKREFTYFMLGASRF
LYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004192Rieske_TM
IPR014349Rieske_Fe-S_prot