prot_Ecto-sp9_F_contig8852.17037.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig8852.17037.1
Unique Nameprot_Ecto-sp9_F_contig8852.17037.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length62
Homology
BLAST of mRNA_Ecto-sp9_F_contig8852.17037.1 vs.
Match: Transient (Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W7_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.420e-26
Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 0
Query:    1 MTRIALGEFDNIYPLMVEIDGAAAFMIIVTYQTLQVILLLNIVISILLDAFQTVQKRNSVVA 62
            MTRIALGEFDNIYPLMVEIDGAAAFMIIVTYQTLQ ILLLNIVISILLDAFQ VQKRNSVVA
Sbjct:  302 MTRIALGEFDNIYPLMVEIDGAAAFMIIVTYQTLQCILLLNIVISILLDAFQMVQKRNSVVA 363          
BLAST of mRNA_Ecto-sp9_F_contig8852.17037.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV8_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.060e-13
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0
Query:   16 MVEIDGAAAFMIIVTYQTLQVILLLNIVISILLDAFQTVQKRNSVVA 62
            MV+IDG AAFMIIVTYQTLQ ILLLNIVISILLDAFQ VQ R+SVVA
Sbjct:    1 MVDIDGGAAFMIIVTYQTLQCILLLNIVISILLDAFQMVQTRDSVVA 47          
BLAST of mRNA_Ecto-sp9_F_contig8852.17037.1 vs.
Match: Transient (Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ6_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 9.660e-6
Identity = 24/51 (47.06%), Postives = 37/51 (72.55%), Query Frame = 0
Query:    1 MTRIALGEFDNIYPLMVEIDGAAAFMIIVTYQTLQVILLLNIVISILLDAF 51
            +TRI+LGE +N YP +++       +++V YQ L V+LLLN+VI+ILL+ F
Sbjct:   92 VTRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLETF 142          
BLAST of mRNA_Ecto-sp9_F_contig8852.17037.1 vs.
Match: Transient (Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ7_ECTSI)

HSP 1 Score: 47.8 bits (112), Expect = 4.010e-5
Identity = 24/54 (44.44%), Postives = 38/54 (70.37%), Query Frame = 0
Query:    1 MTRIALGEFDNIYPLMVEIDGAAAFMIIVTYQTLQVILLLNIVISILLDAFQTV 54
            +TRI+LGE +N YP +++       + +V YQ L V+LLLN+VI+I L+A++ V
Sbjct:   61 VTRISLGESENFYPQILDAQPTVGPVAVVLYQVLGVVLLLNVVIAIFLEAYRGV 114          
BLAST of mRNA_Ecto-sp9_F_contig8852.17037.1 vs.
Match: PKD_channel (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L574_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 5.710e-5
Identity = 24/52 (46.15%), Postives = 38/52 (73.08%), Query Frame = 0
Query:    3 RIALGEFDNIYPLMVEIDGAAAFMIIVTYQTLQVILLLNIVISILLDAFQTV 54
            RI+LGE +N YP +++       +++V YQ L V+LLLN+VI+ILL+A++ V
Sbjct:   63 RISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGV 114          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8852.17037.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Transient1.420e-2696.77Receptor Potential Channel n=1 Tax=Ectocarpus sili... [more]
Uncharacterized1.060e-1387.23protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Transient9.660e-647.06Receptor Potential Channel n=1 Tax=Ectocarpus sili... [more]
Transient4.010e-544.44Receptor Potential Channel n=1 Tax=Ectocarpus sili... [more]
PKD_channel5.710e-546.15domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 23..48
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 49..62
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..22
NoneNo IPR availableTMHMMTMhelixcoord: 26..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8852contigEcto-sp9_F_contig8852:4002..5146 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8852.17037.1mRNA_Ecto-sp9_F_contig8852.17037.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig8852 3975..5146 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig8852.17037.1 ID=prot_Ecto-sp9_F_contig8852.17037.1|Name=mRNA_Ecto-sp9_F_contig8852.17037.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=62bp
MTRIALGEFDNIYPLMVEIDGAAAFMIIVTYQTLQVILLLNIVISILLDA
FQTVQKRNSVVA
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