prot_Ecto-sp9_F_contig876.16940.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig876.16940.1
Unique Nameprot_Ecto-sp9_F_contig876.16940.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length301
Homology
BLAST of mRNA_Ecto-sp9_F_contig876.16940.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L288_9PHAE)

HSP 1 Score: 564 bits (1453), Expect = 1.590e-202
Identity = 287/300 (95.67%), Postives = 294/300 (98.00%), Query Frame = 0
Query:    1 MATIGMSQAAAAATAFLLTDALVPVWEWNGVDVSATLLNISGSFLAGLANGGGMAPEDKKNSEVRAAISIVISGFLAVWTSLSFVVEHGAHLAVVASLEAGVGYLLVSILLGWGVYLQAHRWGRRWRVSRKAVDWAKRGPLWMCKGAEKTALVAAVAAIAWGGWMAGQHPHKLAWGVIMAVIGGMIGNWFSTLNGGAEGRIVWGDWRCNALSFAGVITAGRYAASLEPEERDATLESAFFVALVAQGFGTISGFSDLSADAGDLALKGDYWGAAANMVLNIATAVVALLARFKAAKIFIS 300
            MATIGMSQAAAAATAFLLTDALVPVWEWNGVDVSATLLNISGSF AGLANGGGMAPED KNSEVRAA SIVISGFLAVWTSL+FVVEHGAHLAVVASLEAGVGYLLVSILLGWGVYLQAHRWGRRWRVSRKAVDWAKRGPLWMCKGAEKTALVAAVAA+AWG WMAGQHPHKL WG+IMAV+GG+IGNWFSTLNGGAEGRIVWGDWRCNALSFAGVITAGRYAASLEPEER+ATLESAFFVALVAQGFGTISGFSDLSADAGDLALKGDYWGAAANM+LNIATAVVAL ARFKAAKIFIS
Sbjct:    1 MATIGMSQAAAAATAFLLTDALVPVWEWNGVDVSATLLNISGSFFAGLANGGGMAPEDSKNSEVRAANSIVISGFLAVWTSLAFVVEHGAHLAVVASLEAGVGYLLVSILLGWGVYLQAHRWGRRWRVSRKAVDWAKRGPLWMCKGAEKTALVAAVAAMAWGSWMAGQHPHKLGWGIIMAVMGGIIGNWFSTLNGGAEGRIVWGDWRCNALSFAGVITAGRYAASLEPEEREATLESAFFVALVAQGFGTISGFSDLSADAGDLALKGDYWGAAANMLLNIATAVVALFARFKAAKIFIS 300          
BLAST of mRNA_Ecto-sp9_F_contig876.16940.1 vs.
Match: Uncharacterized (protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U7N9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 7.720e-6
Identity = 81/298 (27.18%), Postives = 121/298 (40.60%), Query Frame = 0
Query:   12 AATAFLLTDALVPVW--EWNGVDVSATLLNISGSFLAGLANGGGMAPEDKKNSEVRAAISIVISGFLAVWTSLSFVVEHGAHLAVVASLEAGVGYLLVSILLGWGVYLQAHRWGRRW---------RVSRKAVDWAKRGPLWMCKGAEKTALVAAVAAIA-------------WGGWMAGQHPHKLAWGVIMAVIGGMIGNWFSTLNGGAEGRIVWGDWRCNALSFAGVITAGRYAASLEPEERDATLESAFFVALVAQGFGTISGFSDLSADAGDLALKGDYWGAAANMVLNIATAV 285
            A  A  +T    P W  E  G++VSATLLN+ G F+ G+A       E   + E + A     S FL V+TS  ++V+H   L V  +   G  Y++ S+      +     + R +         R+    V W          G     LV  V AIA             + G +A     +L  G+ M++    + ++ S   G  +G I WG WRCN  S    + A      L     +  ++       V+   G++SGFS   A    LA +G    A AN+ LNI TA+
Sbjct:   81 ACAAEAITTCFTPEWVHEPTGINVSATLLNVLGPFMEGVAQ---HLQETTAHPEWKRACYYFRSVFLGVFTSYCYMVDHAGDL-VGKNPFIGPLYIISSLCYACVAFRMGQTFMRLFLANIFQPDKRLPSSIVGW----------GLTAFILVVLVVAIAGPPGFVRDPNDAQFLGPIAVNDGLELILGMAMSITATWLASFVSV--GNYDGSIDWGTWRCNLASVILTVLAYGVHYILPGVAHNVAVKK-----FVSSFCGSLSGFSATIAATMVLADQGKRPVAMANLGLNIVTAL 357          
BLAST of mRNA_Ecto-sp9_F_contig876.16940.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3X1D9_EMIHU)

HSP 1 Score: 55.1 bits (131), Expect = 1.690e-5
Identity = 39/122 (31.97%), Postives = 59/122 (48.36%), Query Frame = 0
Query:   13 ATAFLLTDALVPVWEWNGVDVSATLLNISGSFLAGLANGGGMAPEDKKNSEVRAAISIVISGFLAVWTSLSFVVEHGAHLAVVASLE---AGVGYLLVSILLGWGVYLQAHRWGRRWRVSRK 131
            A A  LT    P+     +DVSAT+LNISG+FLAG+A+     P   +   + +A +   +GF+ V+TS + + E  A L      E    G GY+L            A R G R +++ +
Sbjct:   57 ALAECLTSVFCPIVMVGALDVSATILNISGAFLAGIAHSADATPSAPR---LHSACATFQAGFIGVFTSFTVLFEQAARLDTSPGCENRACGAGYVLAVFAAQLAAAAAAARLGGRGQLASR 175          
BLAST of mRNA_Ecto-sp9_F_contig876.16940.1 vs.
Match: Uncharacterized (protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DBE1_EMIHU)

HSP 1 Score: 54.3 bits (129), Expect = 3.490e-5
Identity = 35/100 (35.00%), Postives = 52/100 (52.00%), Query Frame = 0
Query:   13 ATAFLLTDALVPVWEWNGVDVSATLLNISGSFLAGLANGGGMAPEDKKNSEVRAAISIVISGFLAVWTSLSFVVEHGAHLAVVASLE---AGVGYLLVSI 109
            A A  LT    P+     +DVSAT+LNISG+FLAG+A+     P   +   + +A +   +GF+ V+TS + + E  A L      E    G GY+L  +
Sbjct:   37 ALAECLTSVFCPIVMVGALDVSATILNISGAFLAGIAHSADATPSAPR---LHSACATFQAGFIGVFTSFTVLFEQAARLDTSPGCENRACGAGYVLAEM 133          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig876.16940.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized1.590e-20295.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.720e-627.18protein n=2 Tax=Aphanomyces invadans TaxID=157072 ... [more]
Hypothetical1.690e-531.97protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID... [more]
Uncharacterized3.490e-535.00protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 118..149
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 87..91
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..17
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 173..190
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 259..269
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 270..290
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 238..258
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 67..86
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 291..300
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..36
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 92..117
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 191..237
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 150..167
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 37..55
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 168..172
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 56..66
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.582
NoneNo IPR availableTMHMMTMhelixcoord: 173..190
NoneNo IPR availableTMHMMTMhelixcoord: 95..117
NoneNo IPR availableTMHMMTMhelixcoord: 151..168
NoneNo IPR availableTMHMMTMhelixcoord: 270..292
NoneNo IPR availableTMHMMTMhelixcoord: 238..255
NoneNo IPR availableTMHMMTMhelixcoord: 66..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig876contigEcto-sp9_F_contig876:18567..23765 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig876.16940.1mRNA_Ecto-sp9_F_contig876.16940.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig876 18541..24246 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig876.16940.1 ID=prot_Ecto-sp9_F_contig876.16940.1|Name=mRNA_Ecto-sp9_F_contig876.16940.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=301bp
MATIGMSQAAAAATAFLLTDALVPVWEWNGVDVSATLLNISGSFLAGLAN
GGGMAPEDKKNSEVRAAISIVISGFLAVWTSLSFVVEHGAHLAVVASLEA
GVGYLLVSILLGWGVYLQAHRWGRRWRVSRKAVDWAKRGPLWMCKGAEKT
ALVAAVAAIAWGGWMAGQHPHKLAWGVIMAVIGGMIGNWFSTLNGGAEGR
IVWGDWRCNALSFAGVITAGRYAASLEPEERDATLESAFFVALVAQGFGT
ISGFSDLSADAGDLALKGDYWGAAANMVLNIATAVVALLARFKAAKIFIS
*
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