prot_Ecto-sp9_F_contig118.1483.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig118.1483.1
Unique Name	prot_Ecto-sp9_F_contig118.1483.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	521

Homology

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BLAST of mRNA_Ecto-sp9_F_contig118.1483.1 vs.
Match: Temporarily (Assigned Gene name family member (Tag-262) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT5_ECTSI)

HSP 1 Score: 660 bits (1702), Expect = 4.510e-233
Identity = 476/503 (94.63%), Postives = 484/503 (96.22%), Query Frame = 0

Query:    1 MADEDALFAEFMGEIKSTVVAAETKGAGDAGEDDDDAASDAASVGDVKADDAEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAVAAASTARATGSGQKASTGDKGTAAAKKDPDGSGADAGTGGXXXXXXXXXXXXXXXXXXXXLDSSGKGGKGETTKTGGGGKGKEGVKDGSGSARXXXXXXXXXXXXXXXXXXXXGSKDDEEMVGFGGSGGVAKQQAGMDMHNNPSQMGGGGPGPMPGNNNGMHMGAPPPGMRGNMGMMGAGNGMAGFGXXXXXXXXXXXXXXXXXMPPGXXXXXXXXXXXXXXXXXGGPGPYPDGSMGYGYGGPMNGMMPGGPGLGMGXXXXXXXXXXXXXXXXXXXXXXXKDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVVREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEV 503
            MADEDALFAEFMGEIKSTVVAAETKGA DAGE+DD AASDAASVGDVKADDAEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAVAAASTARATGSG KA TGDKGTAAAKKDPDGSGADAGTGGXXXXXXXXXXXXXXXXXXXX   SGKGGKGETTKTGG  KGK+GVK+GSG+  XXXXXXXXXXXXXXXXXXXXGSKDDEEMVGFGGSGGVAKQQAGMDMHNNPSQMGGGGPG MPGNNNGMHMGAPPPGMRGNMGMMGAG+GMAGFGXXXXXXXXXXXXXXXXXMPPGXXXXXXXXXXXXXXXX GGPGPYPDGSMGYGYGGPMNGMMPGG      XXXXXXXXXXXXXXXXXXXXXXXKDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAK++REKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKE+
Sbjct:    1 MADEDALFAEFMGEIKSTVVAAETKGAADAGEEDDGAASDAASVGDVKADDAEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAVAAASTARATGSGPKARTGDKGTAAAKKDPDGSGADAGTGGXXXXXXXXXXXXXXXXXXXXXXXSGKGGKGETTKTGGXXKGKKGVKNGSGTXXXXXXXXXXXXXXXXXXXXXXGSKDDEEMVGFGGSGGVAKQQAGMDMHNNPSQMGGGGPGTMPGNNNGMHMGAPPPGMRGNMGMMGAGSGMAGFGXXXXXXXXXXXXXXXXXMPPGXXXXXXXXXXXXXXXXMGGPGPYPDGSMGYGYGGPMNGMMPGGXXX---XXXXXXXXXXXXXXXXXXXXXXXKDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKIIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEL 500

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BLAST of mRNA_Ecto-sp9_F_contig118.1483.1 vs.
Match: RRM (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ6_9PHAE)

HSP 1 Score: 564 bits (1453), Expect = 3.660e-195
Identity = 435/551 (78.95%), Postives = 443/551 (80.40%), Query Frame = 0

Query:    1 MADEDALFAEFMGEIKSTVVAAETKGAGDAGEDDDDAASDAASVGDVKADDAEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAVAAASTARATGSGQKASTGDKGTAAAKKDPDGSGADAGTGGXXXXXXXXXXXXXXXXXXXXLDSSGKGGKGETTKTGGGGKGKEGVKDGSGSARXXXXXXXXXXXXXXXXXXXXGSKDDEEMVGFGGSGGVAKQQAGMDMHNNPSQMGGGGPGPMPGNNNGMHMGAPPPGMRGNMGMMGAGNGMAGFGXXXXXXXXXXXXXXXXXMPPGXXXXXXXXXXXXXXXXXGGPGPYPDGSMGYGYGGPMNGMMPGGPGLGMGXXXXXXXXXXXXXXXXXXXXXXX-------------------------------KDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVVREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALGHL 520
            M+DEDA+FAEFMGEIKSTVVAAETK A DAGEDD  AASDAASVGDV+AD  EGGGE RNHADTTKRR ETEASPSPAPKKPRFMGKLVAAA PVKAGAVAAASTARATGSG KASTGDKGTAAAKKDPDGSGA A    XXXXXXXXXXXXXXX      D+SGKG                          XXXXXX              GSKDDEEMVGFGGSGGVAK +AGMDMHNNPS MGGGGPG MPGNNNGMHMGAPPPG+RGNMG+MGAGNGMAGFG    XXXXXXXXXXX  MPPGXXXXXXXXXXXXXXXXXGGPGPYPDGSMGYGYGGPMN MM GG GL   XXXXXXXXXXXXXXXXXXXXXXX                               KDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKV+REKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALG L
Sbjct:    1 MSDEDAIFAEFMGEIKSTVVAAETKTASDAGEDDG-AASDAASVGDVQADGTEGGGEARNHADTTKRR-ETEASPSPAPKKPRFMGKLVAAAPPVKAGAVAAASTARATGSGPKASTGDKGTAAAKKDPDGSGASA-XXXXXXXXXXXXXXXXXXTTPPLPDASGKGXXXXXX-----------XXXXXXXXXXXXXXXSERTPADGGDANGAGSKDDEEMVGFGGSGGVAKHEAGMDMHNNPSPMGGGGPGTMPGNNNGMHMGAPPPGIRGNMGVMGAGNGMAGFGGDGYXXXXXXXXXXXG-MPPGXXXXXXXXXXXXXXXXXGGPGPYPDGSMGYGYGGPMNVMMSGGGGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGSGAEGGXXXXXXXXXKDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALGLL 536

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BLAST of mRNA_Ecto-sp9_F_contig118.1483.1 vs.
Match: RRM (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC6_9STRA)

HSP 1 Score: 182 bits (463), Expect = 3.220e-49
Identity = 92/127 (72.44%), Postives = 103/127 (81.10%), Query Frame = 0

Query:  394 KFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVVREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALGHL 520
            KF RV GG +W+D TL EWPEND+RLFVGDLGNEVTD+NLA AF  Y SF KAKVVREK N KSKGYGFVSF DG DM++ALRE+ GKYLGNRPMKISKS+W ER++KEV+KK       KKALG L
Sbjct:  235 KFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGLL 361

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BLAST of mRNA_Ecto-sp9_F_contig118.1483.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJZ2_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.490e-42
Identity = 87/131 (66.41%), Postives = 102/131 (77.86%), Query Frame = 0

Query:  388 KAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVVREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALG 518
            K+ +  K  R A G+ W D+TL EWPEND+RLFVGD+GNEVTDD L+ AF KY SFAKAKVVR+K+  KSKGYGF SF+D  D  KALRE  GKY+GNRP+K+ KS W+ERD+KEVKK  XXXXX K ALG
Sbjct:  167 KSATEKKQVRTAAGQVWVDKTLDEWPENDFRLFVGDIGNEVTDDLLSRAFAKYASFAKAKVVRDKYTNKSKGYGFASFIDPFDCAKALREMNGKYIGNRPIKLRKSEWRERDIKEVKKXXXXXXXRKAALG 297

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BLAST of mRNA_Ecto-sp9_F_contig118.1483.1 vs.
Match: RRM (domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QBK6_SAPDV)

HSP 1 Score: 161 bits (407), Expect = 5.260e-42
Identity = 82/123 (66.67%), Postives = 93/123 (75.61%), Query Frame = 0

Query:  384 VAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVVREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKK 506
            VA A++ S  KF RVA GK WED TLAEWPENDYRLF GDLGNEV D+ L+ AF  Y SFA AKVVR+K   KSKGYGFVSFLD  D  KA+RE  GKY+GNRP+KISK  W++R +  VKKK
Sbjct:  150 VANAQSNSDKKFLRVAAGKVWEDATLAEWPENDYRLFCGDLGNEVNDELLSQAFSTYASFAMAKVVRDKLTHKSKGYGFVSFLDPFDAAKAMREMNGKYIGNRPVKISKGKWEDRAIDVVKKK 272

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BLAST of mRNA_Ecto-sp9_F_contig118.1483.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX46_9STRA)

HSP 1 Score: 159 bits (401), Expect = 6.240e-42
Identity = 79/122 (64.75%), Postives = 92/122 (75.41%), Query Frame = 0

Query:  397 RVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVVREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALG 518
            R AGGK+WED+TL EWPEND+RLFVGDLG + T   L   FRKY SFAKA++ R++   K + YGFVSFLDGMDM+KALREQ GKY GNRPMK+SKSTWKERD  E++KK        K LG
Sbjct:   96 RSAGGKTWEDKTLEEWPENDFRLFVGDLGADTTVPMLEQIFRKYPSFAKARICRDRARNKVRQYGFVSFLDGMDMMKALREQNGKYCGNRPMKLSKSTWKERDRSEIRKKDRAKKKFNKKLG 217

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BLAST of mRNA_Ecto-sp9_F_contig118.1483.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4X3_9STRA)

HSP 1 Score: 155 bits (391), Expect = 3.550e-41
Identity = 77/125 (61.60%), Postives = 95/125 (76.00%), Query Frame = 0

Query:  394 KFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVVREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALG 518
            K+ R AGG++WED TLAEW END+RLFVGDLG +VT   L   FR+Y SFAKAK+ R++   K + +GFVSFLDGMD +KA+REQQGKY G RPMKI +STWK+RDV+E+KKK       +K LG
Sbjct:   40 KYMRSAGGQTWEDPTLAEWAENDFRLFVGDLGADVTVPMLESIFRQYQSFAKAKICRDRARNKVRQFGFVSFLDGMDCMKAMREQQGKYCGQRPMKIRRSTWKDRDVQELKKKDKRRKKFEKKLG 164

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BLAST of mRNA_Ecto-sp9_F_contig118.1483.1 vs.
Match: RRM (domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJI1_9STRA)

HSP 1 Score: 157 bits (398), Expect = 9.530e-41
Identity = 75/116 (64.66%), Postives = 92/116 (79.31%), Query Frame = 0

Query:  391 SSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVVREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKK 506
            S  KF R A GK WED TL EWPENDYRLF GDLGNEV DD L+ AF +Y+SFA A+V+R+K   KSKGYGFVSF+DG+D +KA+RE  GKY+G+RP+KI+K  W+ER ++ VKKK
Sbjct:  158 SDKKFLRAAAGKVWEDSTLCEWPENDYRLFCGDLGNEVNDDLLSQAFSQYSSFAMARVIRDKITHKSKGYGFVSFMDGLDAMKAMREMNGKYIGSRPVKITKGKWQERSLEVVKKK 273

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BLAST of mRNA_Ecto-sp9_F_contig118.1483.1 vs.
Match: RNA-binding (protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAQ1_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.260e-40
Identity = 83/134 (61.94%), Postives = 93/134 (69.40%), Query Frame = 0

Query:  384 VAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVVREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKAL 517
            VA A   S  KF RVA GK WED TLAEWPENDYRLF GDLGNEV D+ L  AF  Y+SFA AKVVR+K   KS+GYGFVSFLD  D  KA+R+  GKY+GNRP+KISK  W +R +  VKKK       KK L
Sbjct:  144 VANAAVNSDKKFLRVAAGKVWEDATLAEWPENDYRLFCGDLGNEVNDELLTQAFSTYSSFAMAKVVRDKLTHKSRGYGFVSFLDPFDAAKAMRDMNGKYIGNRPVKISKGKWADRALDVVKKKVKAGKKSKKHL 277

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BLAST of mRNA_Ecto-sp9_F_contig118.1483.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JN71_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.620e-40
Identity = 77/134 (57.46%), Postives = 99/134 (73.88%), Query Frame = 0

Query:  385 AKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVVREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALG 518
            A  + ++S +  R AGGK+W D++L  WPEND+RLFVG+LGNEVTD+ ++ AF  Y S AKAKV+REK++ KSKGYGFVSFLD  D  KALRE  GKY+GNRP K+ +S WK+R +KEV+KK       KK+ G
Sbjct:   47 APERPKASTQAIRHAGGKTWRDDSLDLWPENDFRLFVGNLGNEVTDEIVSHAFASYASLAKAKVIREKFSNKSKGYGFVSFLDPYDCAKALREMNGKYIGNRPCKLQRSNWKDRTLKEVRKKEKKDSKTKKSWG 180

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig118.1483.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig118.1483.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Temporarily	4.510e-233	94.63	Assigned Gene name family member (Tag-262) n=1 Tax...	[more]
RRM	3.660e-195	78.95	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
RRM	3.220e-49	72.44	domain-containing protein n=1 Tax=Tribonema minus ...	[more]
Hypothetical	1.490e-42	66.41	protein n=1 Tax=Rhizochromulina marina TaxID=10348...	[more]
RRM	5.260e-42	66.67	domain-containing protein n=1 Tax=Saprolegnia dicl...	[more]
Hypothetical	6.240e-42	64.75	protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI...	[more]
Hypothetical	3.550e-41	61.60	protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1...	[more]
RRM	9.530e-41	64.66	domain-containing protein n=1 Tax=Aphanomyces eute...	[more]
RNA-binding	1.260e-40	61.94	protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepI...	[more]
Hypothetical	1.620e-40	57.46	protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 418..491 e-value: 1.3E-14 score: 64.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 419..489 e-value: 4.0E-14 score: 52.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 417..495 score: 14.829
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 416..492 e-value: 1.3E-18 score: 68.9
None	No IPR available	PANTHER	PTHR13952:SF8	RRM-CONTAINING PROTEIN-RELATED	coord: 374..511
None	No IPR available	PANTHER	PTHR13952	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	coord: 374..511
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 404..497

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig118	contig	Ecto-sp9_F_contig118:398..6611 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig118.1483.1	mRNA_Ecto-sp9_F_contig118.1483.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig118 199..7494 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig118.1483.1 ID=prot_Ecto-sp9_F_contig118.1483.1|Name=mRNA_Ecto-sp9_F_contig118.1483.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=521bp
MADEDALFAEFMGEIKSTVVAAETKGAGDAGEDDDDAASDAASVGDVKAD
DAEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAV
AAASTARATGSGQKASTGDKGTAAAKKDPDGSGADAGTGGGANGGSKKTT
KGKKTTTPPPLDSSGKGGKGETTKTGGGGKGKEGVKDGSGSARGGAGGAS
EGTPAHGGDANGAGSKDDEEMVGFGGSGGVAKQQAGMDMHNNPSQMGGGG
PGPMPGNNNGMHMGAPPPGMRGNMGMMGAGNGMAGFGGGGGYGMPPPGMG
MNMGMPPGMNMGMPPGMNMGMPPGMGGPGPYPDGSMGYGYGGPMNGMMPG
GPGLGMGGSAAGSGAEGGAAAAAAAAAAGGKDKVAKAKAESSNKFKRVAG
GKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVVR
EKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDV
KEVKKKTKRAKKVKKALGHL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf