prot_Ecto-sp9_F_contig11791.1477.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig11791.1477.1
Unique Name	prot_Ecto-sp9_F_contig11791.1477.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	301

Homology

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BLAST of mRNA_Ecto-sp9_F_contig11791.1477.1 vs.
Match: RRM (Nup35-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE7_ECTSI)

HSP 1 Score: 432 bits (1112), Expect = 3.230e-150
Identity = 278/301 (92.36%), Postives = 279/301 (92.69%), Query Frame = 0

Query:    1 GRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTGVPPRGAYHDATAGGXXXXXXNAFRNXXXXXXXYGQTPAAAQPSPFARGPMNASFSAAGXXXXXXXXXXXXGCSNPGQTAQQQQQ-HGFGARVGFSSEVALVPVEASGNSRGRNVMDXXXXXXIPTRSLADXPXXVRDGGVLXXXXXXXXXXXXXXXXXXXXXXXXDRMXXXXXIGGFNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHAGGNLT 300
            GRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTG PPRGA+HDATAGGXXXXXXNAFRN  XXX   GQTPAAAQPSPFARGPMN SFSAAG  XXXXXXXXXX  SNPGQTAQQQQQ HGFGARVGFSSEVALVPVEASGNSRGRNVMDXXXXXXIPTRSLAD P  VRDGGVL  XXXXXXXXXXXXXXXXXXX   DRMXXXX IG FNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHAGGNLT
Sbjct:   26 GRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTGAPPRGAFHDATAGGXXXXXXNAFRNGGXXXGGCGQTPAAAQPSPFARGPMNDSFSAAGGGXXXXXXXXXXXYSNPGQTAQQQQQQHGFGARVGFSSEVALVPVEASGNSRGRNVMDXXXXXXIPTRSLADDPDDVRDGGVLFGXXXXXXXXXXXXXXXXXXXV--DRMXXXXGIGSFNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHAGGNLT 324

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BLAST of mRNA_Ecto-sp9_F_contig11791.1477.1 vs.
Match: RRM (Nup35-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSX2_9PHAE)

HSP 1 Score: 353 bits (905), Expect = 1.030e-118
Identity = 254/294 (86.39%), Postives = 260/294 (88.44%), Query Frame = 0

Query:    1 GRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTGVPPRGAYHDATAGGXXXXXX-NAFRNXXXXXXXYGQTPAAAQPSPFARGPMNASFSAAGXXXXXXXXXXXXGCSNPGQTAQQQQQHGFGARVGFSSEVALVPVEASGNSRGRNVMDXXXXXXIP-TRSLADXPXXVRDGGVLXXXXXXXXXXXXXXXXXXXXXXXXDRMXXXXXIGGFNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDE 292
            GRDGPPEGQVVEGDLFGNPKRQ+FRSTDPPTGVPPRGAY DATAGGXXXXXX NAFR+XXXXXXX  QTPA+AQPSPFARGPMNAS S A XXXXXXXXXXXXG S+PGQTAQQQQQHGFGARVGFSS+VA VPVEASGNSRG+NVMDXXXXXX   TRSL  X XX       XXXXXXXXXXXXXXXXXX         XXXXX GGFNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLY KYATRLQAEKALAAGHGSRLTDTVMLGVQRV DDE
Sbjct:   26 GRDGPPEGQVVEGDLFGNPKRQNFRSTDPPTGVPPRGAYIDATAGGXXXXXXXNAFRSXXXXXXXXXQTPASAQPSPFARGPMNASSSVAXXXXXXXXXXXXXGYSDPGQTAQQQQQHGFGARVGFSSDVAFVPVEASGNSRGQNVMDXXXXXXXXXTRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------XXXXXXFGGFNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYLKYATRLQAEKALAAGHGSRLTDTVMLGVQRVLDDE 311

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BLAST of mRNA_Ecto-sp9_F_contig11791.1477.1 vs.
Match: Nucleoporin (NUP35 (Fragment) n=3 Tax=Daphnia TaxID=6668 RepID=E9HKL2_DAPPU)

HSP 1 Score: 67.0 bits (162), Expect = 8.360e-10
Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 0

Query:  213 DTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEV 293
            D+   TWV V+G PP  ++ VL +   +G ++E R     NW++ K+A+RLQA KALA  +G  LTDT+++GV    D  +
Sbjct:    4 DSDAGTWVTVFGFPPTAASYVLTQTAMWGHILEHRIPSQGNWMHLKFASRLQARKALAR-NGRLLTDTLIIGVVPCTDGSI 83

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BLAST of mRNA_Ecto-sp9_F_contig11791.1477.1 vs.
Match: Nucleoporin (NUP53 n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5DW53_9CRUS)

HSP 1 Score: 67.8 bits (164), Expect = 2.560e-9
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 0

Query:  213 DTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEV 293
            D+   TWV V+G PP  ++ VL +   +G ++E R     NW++ K+A+RLQA KALA  +G  LTDT+M+GV    D  +
Sbjct:  136 DSDAGTWVTVFGFPPSAASYVLTQTGMWGHIMEHRIPSQGNWMHLKFASRLQARKALAR-NGRLLTDTLMIGVVPCTDGAI 215

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BLAST of mRNA_Ecto-sp9_F_contig11791.1477.1 vs.
Match: RRM (Nup35-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8L5_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 5.270e-7
Identity = 35/77 (45.45%), Postives = 45/77 (58.44%), Query Frame = 0

Query:  219 WVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHA 295
            W+ V+G        +L  F   GD V+ R   G NWLY +Y TRLQAEKALA   GS L+ +VM+GV+R    E+ A
Sbjct:  128 WITVFGFSAVDMETILRHFQSMGDAVQYRYGRG-NWLYVRYRTRLQAEKALAES-GSTLSGSVMIGVKRCLVSEMDA 202

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BLAST of mRNA_Ecto-sp9_F_contig11791.1477.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFC1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.260e-6
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 0

Query:  213 DTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGV 285
            D +   WVVV+G  P +S  VL  F +FGD+VE     G NWL+ +Y +R+QA+KA+A  +G+ L  T+M+ V
Sbjct:  180 DIRWQDWVVVFGFQPEQSTSVLRYFQRFGDIVEHHRGKG-NWLFIRYRSRMQAQKAVAQ-NGATLDPTLMVAV 250

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BLAST of mRNA_Ecto-sp9_F_contig11791.1477.1 vs.
Match: Nucleoporin (NUP35 n=3 Tax=Ixodes TaxID=6944 RepID=B7PS80_IXOSC)

HSP 1 Score: 58.5 bits (140), Expect = 1.400e-6
Identity = 26/69 (37.68%), Postives = 45/69 (65.22%), Query Frame = 0

Query:  218 TWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQ 286
            TWV V+G PP  ++ ++ +F  +G+++E R  P SNW++  Y ++LQA+KAL+  +G       M+GV+
Sbjct:   75 TWVTVFGFPPSATSYIVQQFSHYGNILEHRVVPESNWVHLHYQSKLQAKKALSK-NGKVFGTNTMVGVK 142

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BLAST of mRNA_Ecto-sp9_F_contig11791.1477.1 vs.
Match: nucleoporin (NUP35 isoform X1 n=1 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001C383A88)

HSP 1 Score: 58.5 bits (140), Expect = 2.890e-6
Identity = 26/69 (37.68%), Postives = 45/69 (65.22%), Query Frame = 0

Query:  218 TWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQ 286
            TWV V+G PP  ++ ++ +F  +G+++E R  P SNW++  Y ++LQA+KAL+  +G       M+GV+
Sbjct:  147 TWVTVFGFPPSATSYIVQQFSHYGNILEHRVVPESNWVHLHYQSKLQAKKALSK-NGKVFGTNTMVGVK 214

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BLAST of mRNA_Ecto-sp9_F_contig11791.1477.1 vs.
Match: RRM (Nup35-type domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ACE0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.090e-6
Identity = 34/77 (44.16%), Postives = 44/77 (57.14%), Query Frame = 0

Query:  219 WVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHA 295
            WV V+G        +L  F   GDV + R   G NWLY +Y TRLQAEKAL+   G+ L  +VM+GV+R    E+ A
Sbjct:  123 WVTVFGFAAVDMEAILKHFQSMGDVTQYRYGRG-NWLYVRYRTRLQAEKALSES-GATLAGSVMIGVKRCLVSEMDA 197

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BLAST of mRNA_Ecto-sp9_F_contig11791.1477.1 vs.
Match: RRM (Nup35-type domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0PIB6_SAPDV)

HSP 1 Score: 58.2 bits (139), Expect = 3.230e-6
Identity = 34/77 (44.16%), Postives = 43/77 (55.84%), Query Frame = 0

Query:  219 WVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHA 295
            W+ V+G        +L  F   GD V+ R   G NWLY +Y TRLQAEKAL    G+ L  TVM+GV+R    E+ A
Sbjct:  128 WITVFGFSAVDMEAILKHFQSIGDAVQYRYGRG-NWLYVRYRTRLQAEKALGES-GATLGGTVMIGVKRCLVSEMDA 202

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig11791.1477.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig11791.1477.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 16


Match Name	E-value	Identity	Description
RRM	3.230e-150	92.36	Nup35-type domain-containing protein n=1 Tax=Ectoc...	[more]
RRM	1.030e-118	86.39	Nup35-type domain-containing protein n=1 Tax=Ectoc...	[more]
Nucleoporin	8.360e-10	40.74	NUP35 (Fragment) n=3 Tax=Daphnia TaxID=6668 RepID=...	[more]
Nucleoporin	2.560e-9	41.98	NUP53 n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A0...	[more]
RRM	5.270e-7	45.45	Nup35-type domain-containing protein n=1 Tax=Achly...	[more]
Hypothetical	1.260e-6	43.84	protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1...	[more]
Nucleoporin	1.400e-6	37.68	NUP35 n=3 Tax=Ixodes TaxID=6944 RepID=B7PS80_IXOSC	[more]
nucleoporin	2.890e-6	37.68	NUP35 isoform X1 n=1 Tax=Ixodes scapularis TaxID=6...	[more]
RRM	3.090e-6	44.16	Nup35-type domain-containing protein n=1 Tax=Thrau...	[more]
RRM	3.230e-6	44.16	Nup35-type domain-containing protein n=2 Tax=Sapro...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007846	RNA-recognition motif (RRM) Nup35-type domain	PFAM	PF05172	Nup35_RRM	coord: 215..290 e-value: 2.0E-11 score: 43.7
IPR007846	RNA-recognition motif (RRM) Nup35-type domain	PROSITE	PS51472	RRM_NUP35	coord: 214..295 score: 18.712
IPR017389	Nucleoporin, NUP53	PIRSF	PIRSF038119	NUP53	coord: 64..148 e-value: 320.0 score: -2.1 coord: 207..299 e-value: 2.0E-17 score: 61.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 213..287 e-value: 4.5E-16 score: 60.6
None	No IPR available	PANTHER	PTHR21527:SF6	NUCLEOPORIN NUP35	coord: 209..295
None	No IPR available	PANTHER	PTHR21527	FAMILY NOT NAMED	coord: 209..295
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 217..292

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig11791	contig	Ecto-sp9_F_contig11791:637..2261 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig11791.1477.1	mRNA_Ecto-sp9_F_contig11791.1477.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig11791 637..2261 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig11791.1477.1 ID=prot_Ecto-sp9_F_contig11791.1477.1|Name=mRNA_Ecto-sp9_F_contig11791.1477.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=301bp
GRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTGVPPRGAYHDATAGGGGGG
GGNAFRNGGAGAGGYGQTPAAAQPSPFARGPMNASFSAAGGGSAPGPGYG
AGGCSNPGQTAQQQQQHGFGARVGFSSEVALVPVEASGNSRGRNVMDDDD
DDDIPTRSLADDPDDVRDGGVLFGGGEGLRSRRGGGGGGGGGGGGGDRMG
GGGGIGGFNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQP
GSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHAGGNLT
*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007846	RRM_NUP35_dom
IPR017389	Nucleoporin_NUP53
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf