prot_Ecto-sp9_F_contig1160.1346.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig1160.1346.1
Unique Nameprot_Ecto-sp9_F_contig1160.1346.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length760
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1160.1346.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGZ2_ECTSI)

HSP 1 Score: 473 bits (1218), Expect = 1.100e-158
Identity = 290/332 (87.35%), Postives = 291/332 (87.65%), Query Frame = 0 
Query:    1 MAETSSFFPPAGRRDGVXXXXXXXXXXXXXXXXXXLSKDQRPLAIRASRRQTMAATTCGICLETVDDQGFLLRRAACDVLAPACAHAYCFACISIWSERTNTCPLCKERFNAIRHGGGSKSGIRLAAGEIVEVQERDQAANYSSDEDLAAALVAQESGTSSGEQDDGEAGRVGPHGYISDGFLVADGSGESEXXXXXXXXXXE-----LWEELYDLRRPERXXXXXXXXXXXXXXXXXXXXXXXXVTGAPRRRSGNPDGRARAGGELRHSPMSSFFGGRGGPAAWAGRGAAERPRRRRRRAGVGDVDGGMLPNELRQLQQEAARLVGDSPLR 327
            M ETSSFFPPAGRRDGV                  LSKDQRPLAIRASRRQ MAATTCGICLETVDDQGFLLRRAACDVLAPACAHAYCFACISIWSERTNTCPLCKERFNAIRHGGGSKSGIRLAAGEIVEVQERDQAAN SSDEDLAAAL AQESGTSSGEQDDGEAGRVGPHGYISDGFLVADG+GESE XXXXXXXXX      LWEELYDLRRPER   XXXXXXXXXXXXXXXXXXXXXVTGAPRRRSGNPDGRAR GGELRHSPMSSFFGGRGGPAAWAGRGAAERPRRRRR AGVGDVDGGMLPNELRQLQQEA R     P R
Sbjct:    1 MTETSSFFPPAGRRDGVAAAPSPSPGEAADPPPS-LSKDQRPLAIRASRRQIMAATTCGICLETVDDQGFLLRRAACDVLAPACAHAYCFACISIWSERTNTCPLCKERFNAIRHGGGSKSGIRLAAGEIVEVQERDQAANCSSDEDLAAALAAQESGTSSGEQDDGEAGRVGPHGYISDGFLVADGAGESEEXXXXXXXXXXXXDEGLWEELYDLRRPERRRSXXXXXXXXXXXXXXXXXXXXXVTGAPRRRSGNPDGRARVGGELRHSPMSSFFGGRGGPAAWAGRGAAERPRRRRR-AGVGDVDGGMLPNELRQLQQEAGRAAAPRPPR 330
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BLAST of mRNA_Ecto-sp9_F_contig1160.1346.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDT9_9PHAE)

HSP 1 Score: 434 bits (1117), Expect = 3.740e-144
Identity = 264/317 (83.28%), Postives = 271/317 (85.49%), Query Frame = 0 
Query:    1 MAETSSFFPPAGRRDGVXXXXXXXXXXXXXXXXXXLSKDQRPLAIRASRRQTMAATTCGICLETVDDQGFLLRRAACDVLAPACAHAYCFACISIWSERTNTCPLCKERFNAIRHGGGSKSGIRLAAGEIVEVQERDQAANYSSDEDLAAALVAQESGTSSGEQDDGEAGRVGPHGYISDGFLVADGSGESEXXXXXXXXXXELWEELYDLRRPERXXXXXXXXXXXXXXXXXXXXXXXXVTGAPRRRSGNPDGRARAGGELRHSPMSSFFGGRGGPAAWAGRGAAERPRRRRRRAGVGDVDGGMLPNELRQLQQEA 317
            MAETSSFFP AGRRDGV                  LSKDQRPLAIRASRRQTMAATTCGICLETVDDQGFLL+RAAC VLAPACAHAYCFACISIWSERTNTCPLCKERFNAIR+GGGSKSGIRLAAGEIVEVQERDQAA+ SSDEDLAAAL  Q+SGTSS EQDDG AGRVGPHGYISDGFLVADGSGESEXXXXXXXXXXE WEEL DLR+PER    XXXXXXXXXXXXXX      V GAP+RRS NPDGR  AGGELRHS MSSF  GRGGPAAWAGRGAAERP RRRR AGVGDVDGGMLPNELRQLQ+EA
Sbjct:    1 MAETSSFFPTAGRRDGVAAAPSPSPDGAAADSRPPLSKDQRPLAIRASRRQTMAATTCGICLETVDDQGFLLKRAACGVLAPACAHAYCFACISIWSERTNTCPLCKERFNAIRNGGGSKSGIRLAAGEIVEVQERDQAADCSSDEDLAAALATQDSGTSSSEQDDGAAGRVGPHGYISDGFLVADGSGESEXXXXXXXXXXESWEELSDLRQPERRRSAXXXXXXXXXXXXXXGGSDD-VIGAPQRRSRNPDGRGSAGGELRHSSMSSFVRGRGGPAAWAGRGAAERPPRRRR-AGVGDVDGGMLPNELRQLQEEA 315
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BLAST of mRNA_Ecto-sp9_F_contig1160.1346.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX2_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.430e-16
Identity = 158/191 (82.72%), Postives = 158/191 (82.72%), Query Frame = 0 
Query:  560 SATSGNANRRFGLSAALGVSSLGEGSSLSANKTAAGRTSLAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ASRLTGTSRRRGGLRSPDADSAAAXXXXXXXXGGATGATAGPVVEARREGEXXXXXXARGEEGGGSRKRTKNR 748
            SATS NANRRFGLSAALG  SLG GS  SAN TAAGR SLA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    ASRLTGTSRRRGGLRSPDADSAAA        G  TGATAG VVE RREGE XXXX  RGEEG GSRKR K R
Sbjct:  144 SATSDNANRRFGLSAALGEGSLGAGSLSSANITAAGRRSLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLANAASRLTGTSRRRGGLRSPDADSAAAPASA----GVVTGATAGLVVEGRREGEEXXXXIGRGEEGEGSRKRAKVR 330
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BLAST of mRNA_Ecto-sp9_F_contig1160.1346.1 vs.
Match: RING-type (domain-containing protein n=4 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5WYF4_9CNID)

HSP 1 Score: 59.3 bits (142), Expect = 2.670e-5
Identity = 38/107 (35.51%), Postives = 59/107 (55.14%), Query Frame = 0 
Query:   54 AATTCGICLETVDDQGFLLRRAACDVLAPACAHAYCFACISIWSERTNTCPLCKERFNAIRHGGGSKSGIRLAAGEIVEVQERDQAANYSSDED---LAAALVAQES 157
            A   C +CL+ V+ +G ++           CAH +CF CI  WS++TNTCPLCK+RF  I      K  I     + V +++++Q+ N S  ED   +A  L+A++S
Sbjct:   32 APKDCVVCLDKVNVRGVII-----------CAHWFCFVCIHEWSKKTNTCPLCKQRFRCITKVTVGKPYIPT---QKVRIKDKNQS-NISFAEDDYEVAMGLIAEDS 123
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1160.1346.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
RING-type1.100e-15887.35domain-containing protein n=1 Tax=Ectocarpus silic... [more]
RING-type3.740e-14483.28domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.430e-1682.72protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
RING-type2.670e-535.51domain-containing protein n=4 Tax=Clytia hemisphae... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 58..106
e-value: 7.8E-5
score: 32.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 57..107
e-value: 1.4E-6
score: 28.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 58..107
score: 11.899
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 44..149
e-value: 6.1E-12
score: 47.3
NoneNo IPR availablePANTHERPTHR47177FAMILY NOT NAMEDcoord: 37..149
NoneNo IPR availablePANTHERPTHR47177:SF4coord: 37..149
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 55..112
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 84..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1160contigEcto-sp9_F_contig1160:14652..19469 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1160.1346.1mRNA_Ecto-sp9_F_contig1160.1346.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig1160 14546..19694 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig1160.1346.1 ID=prot_Ecto-sp9_F_contig1160.1346.1|Name=mRNA_Ecto-sp9_F_contig1160.1346.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=760bp
MAETSSFFPPAGRRDGVAAAPPPSPGDAAADPPPPLSKDQRPLAIRASRR
QTMAATTCGICLETVDDQGFLLRRAACDVLAPACAHAYCFACISIWSERT
NTCPLCKERFNAIRHGGGSKSGIRLAAGEIVEVQERDQAANYSSDEDLAA
ALVAQESGTSSGEQDDGEAGRVGPHGYISDGFLVADGSGESEEEEEEEGE
DEELWEELYDLRRPERRRSAPSRQQPATTTRRGSGGGSDDVTGAPRRRSG
NPDGRARAGGELRHSPMSSFFGGRGGPAAWAGRGAAERPRRRRRRAGVGD
VDGGMLPNELRQLQQEAARLVGDSPLRPRRRPPPPSRLSRYPQRNRSAPA
RSSSAAAAAGAPAHGRSSTGYVSSLTGRRVGGENDQEDEGPGQSGQRRRQ
HSGPSGLRCTATNDVISGGASSSRHRRAQRRLQRRQQQQSEGSDGWCATS
SEESPEESLGEEEKDGEEETSSSEEEEEEDDSSGSEADSRPWGPSARAPR
RRSERRAGREEPTATRRGRASSAAAAATATTAPPARPPRVERPRPSPAAA
SSSHGSAASSATSGNANRRFGLSAALGVSSLGEGSSLSANKTAAGRTSLA
PAAAASSPPWLTRRRFSSASGAGEERRALLRPPPPPPLQRRRYSPFEEEV
SASSPSRGPQPGGGGRGGGGSLASAASRLTGTSRRRGGLRSPDADSAAAP
TPAPAPAGGATGATAGPVVEARREGEEEEEEIARGEEGGGSRKRTKNRCR
PVLGAGNAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS