prot_Ecto-sp9_F_contig10679.605.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig10679.605.1
Unique Nameprot_Ecto-sp9_F_contig10679.605.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length136
Homology
BLAST of mRNA_Ecto-sp9_F_contig10679.605.1 vs.
Match: Ribosome (biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G698_ECTSI)

HSP 1 Score: 283 bits (723), Expect = 4.250e-90
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0
Query:    1 GEVQCVKFHVSKPFLFVATKQQVRVYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSVHVFHATVYSDLLRNPLVVPLKILRGHEV 136
            GEVQCVKFHVSKPFLFVATKQQVR+YHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSVHVFHATVYSDLLRNPLVVPLKILRGHEV
Sbjct:  474 GEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSVHVFHATVYSDLLRNPLVVPLKILRGHEV 609          
BLAST of mRNA_Ecto-sp9_F_contig10679.605.1 vs.
Match: Ribosome (biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI55_9PHAE)

HSP 1 Score: 280 bits (716), Expect = 5.150e-87
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0
Query:    1 GEVQCVKFHVSKPFLFVATKQQVRVYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSVHVFHATVYSDLLRNPLVVPLKILRGHEV 136
            GEVQCVKFHVSKPFLFVATKQQVR+YHLIKQMLVKKLISGCKWISCIDVHP+GDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASA DDGSVHVFHATVYSDLLRNPLVVPLKILRGHEV
Sbjct:  714 GEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPTGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASAGDDGSVHVFHATVYSDLLRNPLVVPLKILRGHEV 849          
BLAST of mRNA_Ecto-sp9_F_contig10679.605.1 vs.
Match: Ribosome (biogenesis protein bop1 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL91_9STRA)

HSP 1 Score: 224 bits (571), Expect = 3.290e-72
Identity = 100/136 (73.53%), Postives = 119/136 (87.50%), Query Frame = 0
Query:    1 GEVQCVKFHVSKPFLFVATKQQVRVYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSVHVFHATVYSDLLRNPLVVPLKILRGHEV 136
            G+VQ V FH  KPF F+AT+  VRVYHL+KQ+L+KKL+SGCKWIS +D+HP+GDH++V SYDRRV WFDLDL+S PYKTLKYH+KAVRA  FHR YPLMAS +DDG+VHVFHATVY DL++NPLVVP+KILRGH V
Sbjct:   58 GQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAVAFHRSYPLMASGADDGTVHVFHATVYDDLMQNPLVVPVKILRGHAV 193          
BLAST of mRNA_Ecto-sp9_F_contig10679.605.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFA3_HETAK)

HSP 1 Score: 221 bits (564), Expect = 3.460e-71
Identity = 101/136 (74.26%), Postives = 117/136 (86.03%), Query Frame = 0
Query:    1 GEVQCVKFHVSKPFLFVATKQQVRVYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSVHVFHATVYSDLLRNPLVVPLKILRGHEV 136
            G+VQ  +FH SKPFLFVAT+  VRVYHL+KQ LVKK+++GCKWIS +DVHP+GDH++VGSYDRRV W DLDL+S PYKTLKYH +AVR A +H  YPLMASA+DDG VHVFHA VYSDLLR PL+VPLKILRGH V
Sbjct:   56 GQVQVARFHPSKPFLFVATQTAVRVYHLVKQALVKKVLTGCKWISAMDVHPTGDHVLVGSYDRRVVWCDLDLSSKPYKTLKYHARAVRGAAYHPRYPLMASAADDGRVHVFHAAVYSDLLREPLIVPLKILRGHAV 191          
BLAST of mRNA_Ecto-sp9_F_contig10679.605.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AIM9_9STRA)

HSP 1 Score: 220 bits (560), Expect = 2.640e-69
Identity = 97/136 (71.32%), Postives = 118/136 (86.76%), Query Frame = 0
Query:    1 GEVQCVKFHVSKPFLFVATKQQVRVYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSVHVFHATVYSDLLRNPLVVPLKILRGHEV 136
            G +Q V FH +KPF F+AT+  VRVY+L++Q +VKKL SG KWISC+ VHPSGDH++VGSYDRR+ WFDLDL+STP+KTLKYH KA RA  FH+ YPLMASASDDG++H+FHA VYSDL++NPL+VPLKILRGHEV
Sbjct:  166 GSIQAVSFHPTKPFFFLATQTHVRVYNLVQQAMVKKLSSGVKWISCLHVHPSGDHVLVGSYDRRLCWFDLDLSSTPFKTLKYHEKATRAVGFHKRYPLMASASDDGTIHIFHAMVYSDLIKNPLIVPLKILRGHEV 301          
BLAST of mRNA_Ecto-sp9_F_contig10679.605.1 vs.
Match: BOP1NT-domain-containing (protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQD8_9STRA)

HSP 1 Score: 226 bits (575), Expect = 6.020e-68
Identity = 101/136 (74.26%), Postives = 120/136 (88.24%), Query Frame = 0
Query:    1 GEVQCVKFHVSKPFLFVATKQQVRVYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSVHVFHATVYSDLLRNPLVVPLKILRGHEV 136
            GE Q   FH +KPFLFVA++Q VRVYHL+KQ +VK+LISGC+WIS +D+H SGDHLIVGS DRR+ WFDLDL+STPYKTLKYH +AVRA QFH+ YPLMASASDDGSVH+FH+ VYSDL+RNPL+VP+KILRGH +
Sbjct:  503 GEAQAACFHPNKPFLFVASQQHVRVYHLVKQAMVKRLISGCRWISSLDIHKSGDHLIVGSLDRRMVWFDLDLSSTPYKTLKYHERAVRAVQFHQRYPLMASASDDGSVHIFHSMVYSDLMRNPLIVPVKILRGHTI 638          
BLAST of mRNA_Ecto-sp9_F_contig10679.605.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ES45_TRICV)

HSP 1 Score: 213 bits (543), Expect = 8.120e-68
Identity = 90/136 (66.18%), Postives = 116/136 (85.29%), Query Frame = 0
Query:    1 GEVQCVKFHVSKPFLFVATKQQVRVYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSVHVFHATVYSDLLRNPLVVPLKILRGHEV 136
            GE Q   FH  KPFL VAT+  V++YHL++Q +VK+L++GC+W+S +DVHP+GDH++VGS DRR  WFDLDL STPYKTLKYH +AVR+  +HR YPLMAS+SDDG++HVFH+TVYSDL+RNPL+VP+K+LRGH V
Sbjct:   69 GEPQAACFHPDKPFLLVATQTHVKIYHLVRQTMVKRLMTGCRWVSSLDVHPTGDHVLVGSLDRRAVWFDLDLGSTPYKTLKYHERAVRSVSYHRRYPLMASSSDDGTIHVFHSTVYSDLMRNPLIVPVKVLRGHSV 204          
BLAST of mRNA_Ecto-sp9_F_contig10679.605.1 vs.
Match: Ribosome (biogenesis protein BOP1 homolog n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLF9_9STRA)

HSP 1 Score: 226 bits (575), Expect = 8.240e-67
Identity = 99/136 (72.79%), Postives = 121/136 (88.97%), Query Frame = 0
Query:    1 GEVQCVKFHVSKPFLFVATKQQVRVYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSVHVFHATVYSDLLRNPLVVPLKILRGHEV 136
            G+VQ + FH S+P++F+ T+Q V+++HL++Q LVKKL+SGCKW+S IDVHPSGDH+IVGSYDRRV WFDLDL+STPYKTLK+H KAVR+ QFHR YPLMASASDDG++HVFH  VYSDL RNPL+VPLK+LRGH V
Sbjct:  689 GKVQALSFHPSRPYIFIVTQQHVKLFHLVEQKLVKKLVSGCKWLSSIDVHPSGDHVIVGSYDRRVVWFDLDLSSTPYKTLKFHEKAVRSLQFHRRYPLMASASDDGNIHVFHCMVYSDLARNPLLVPLKVLRGHGV 824          
BLAST of mRNA_Ecto-sp9_F_contig10679.605.1 vs.
Match: BOP1NT (domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7AFN4_9STRA)

HSP 1 Score: 218 bits (555), Expect = 2.040e-66
Identity = 96/136 (70.59%), Postives = 118/136 (86.76%), Query Frame = 0
Query:    1 GEVQCVKFHVSKPFLFVATKQQVRVYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSVHVFHATVYSDLLRNPLVVPLKILRGHEV 136
            G +Q V FH +KPF F+AT+  VRVY+L++Q +VKKL SG KWISC+ VHP+GDH++VGSYDRR+ WFDLDL+STP+KTLKYH KA RA  FH+ YPLMASASDDG++H+FHA VYSDL++NPL+VPLKILRGHEV
Sbjct:  347 GVIQAVSFHPTKPFFFLATQTHVRVYNLVQQAMVKKLSSGVKWISCLHVHPTGDHVLVGSYDRRLCWFDLDLSSTPFKTLKYHEKATRAVGFHKRYPLMASASDDGTIHIFHAMVYSDLIKNPLIVPLKILRGHEV 482          
BLAST of mRNA_Ecto-sp9_F_contig10679.605.1 vs.
Match: Predicted (protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GDR2_PHATC)

HSP 1 Score: 221 bits (563), Expect = 2.940e-66
Identity = 100/136 (73.53%), Postives = 119/136 (87.50%), Query Frame = 0
Query:    1 GEVQCVKFHVSKPFLFVATKQQVRVYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSVHVFHATVYSDLLRNPLVVPLKILRGHEV 136
            GE Q   FH +KPFLFVA++Q VR+YHL+KQ +VK+L SGC+WIS IDVHPSGDHLIVGS DRR+ WFDLDL+STPYKTLKYH +A+R+ ++H  YPLMASASDDG+VHVFH+ VYSDL+RNPLVVP+KILRGH V
Sbjct:  494 GETQLACFHPNKPFLFVASQQHVRIYHLVKQNMVKRLASGCRWISSIDVHPSGDHLIVGSLDRRMIWFDLDLSSTPYKTLKYHERALRSCRYHNRYPLMASASDDGAVHVFHSMVYSDLMRNPLVVPVKILRGHAV 629          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10679.605.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Ribosome4.250e-9099.26biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus... [more]
Ribosome5.150e-8797.79biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus... [more]
Ribosome3.290e-7273.53biogenesis protein bop1 (Fragment) n=1 Tax=Nannoch... [more]
Hypothetical3.460e-7174.26protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Uncharacterized2.640e-6971.32protein n=1 Tax=Aphanomyces astaci TaxID=112090 Re... [more]
BOP1NT-domain-containing6.020e-6874.26protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 ... [more]
Hypothetical8.120e-6866.18protein n=1 Tax=Trieres chinensis TaxID=1514140 Re... [more]
Ribosome8.240e-6772.79biogenesis protein BOP1 homolog n=1 Tax=Spumella e... [more]
BOP1NT2.040e-6670.59domain-containing protein n=1 Tax=Aphanomyces inva... [more]
Predicted2.940e-6673.53protein (Fragment) n=1 Tax=Phaeodactylum tricornut... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 73..112
e-value: 3.6E-5
score: 33.2
coord: 30..69
e-value: 0.0035
score: 26.6
IPR001680WD40 repeatPFAMPF00400WD40coord: 77..111
e-value: 0.004
score: 17.9
coord: 39..65
e-value: 0.0086
score: 16.9
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..136
e-value: 7.3E-68
score: 231.0
IPR028598WD repeat BOP1/Erb1PANTHERPTHR17605RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEINcoord: 1..136
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..121
score: 11.049
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 2..125

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10679contigEcto-sp9_F_contig10679:759..2799 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10679.605.1mRNA_Ecto-sp9_F_contig10679.605.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig10679 759..2799 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig10679.605.1 ID=prot_Ecto-sp9_F_contig10679.605.1|Name=mRNA_Ecto-sp9_F_contig10679.605.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=136bp
GEVQCVKFHVSKPFLFVATKQQVRVYHLIKQMLVKKLISGCKWISCIDVH
PSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMA
SASDDGSVHVFHATVYSDLLRNPLVVPLKILRGHEV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR028598BOP1/Erb1
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf