prot_Ecto-sp9_F_contig10209.236.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig10209.236.1
Unique Nameprot_Ecto-sp9_F_contig10209.236.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length342
Homology
BLAST of mRNA_Ecto-sp9_F_contig10209.236.1 vs.
Match: RF_PROK_I (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC14_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 2.610e-123
Identity = 224/244 (91.80%), Postives = 228/244 (93.44%), Query Frame = 0
Query:   98 MAAAKSGTGGGSPKKSAXXXXKRKPRXXXXXXXXXXRGAKRRLSSGPEGGSAAGPRTVPWGTGAAEGVGGRGRDQASAXXXXXXXXXXXXXXGRGTIARGLHDRRPYTPRPKSFGEVPEDQLQVSFTRASGAGGQNVNKVSTKVEMRFVVSEAEWLPYDVRLRLARQEKGRMNNKGELVVTAQEFRQEKQNRSQALAKLREMINEAWEPAKERKMRTGIGKKGKAIRKQDKLHRSK--ASRTRL 339
            MAAA+SGTGGGSPKKSA    KRKPR  XXXXXXXXRGAKRRLSSGPEGG AA P TVPWGTGAAEGVGGRGR QAS XXXXXXXXXXXXXXGRGTIARGLHDRRPYTPRPKSFGEVPEDQLQVSFTRASGAGGQNVNKVSTKVEMRFVVSEAEWLPYDVRLRLARQEKGRMNNKGELVVTAQEFR +KQNRSQALAKLREMINEAWEPAKERKMRTGI KKGKAIRKQDKLHRSK  A R++L
Sbjct:    1 MAAARSGTGGGSPKKSAGSSNKRKPRHAXXXXXXXXRGAKRRLSSGPEGGPAASPGTVPWGTGAAEGVGGRGRGQASXXXXXXXXXXXXXXXGRGTIARGLHDRRPYTPRPKSFGEVPEDQLQVSFTRASGAGGQNVNKVSTKVEMRFVVSEAEWLPYDVRLRLARQEKGRMNNKGELVVTAQEFRTQKQNRSQALAKLREMINEAWEPAKERKMRTGISKKGKAIRKQDKLHRSKVKAGRSKL 244          
BLAST of mRNA_Ecto-sp9_F_contig10209.236.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PK85_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.330e-29
Identity = 63/128 (49.22%), Postives = 92/128 (71.88%), Query Frame = 0
Query:  214 VPEDQLQVSFTRASGAGGQNVNKVSTKVEMRFVVSEAEWLPYDVRLRLARQEKGRMNNKGELVVTAQEFRQEKQNRSQALAKLREMINEAWEPAKERKMRTGIGKKGKAIRKQDK--LHRSKASRTRL 339
            +PEDQ+Q+SF RASGAGGQNVNKV+TKVE+RF +  A W+P +VR RL   E GR+NN+G   +T QE R + QNR +A+ KL++++  +W+  K RK+R G+ KK K  R+++K  + + K +R R+
Sbjct:  126 IPEDQIQLSFARASGAGGQNVNKVNTKVELRFHIDSANWIPREVRDRLKTNEAGRINNEGYFAITCQENRTQVQNRKEAIKKLQDILKSSWDRPKVRKLRKGLTKKAKENRRENKKKISQKKENRRRV 253          
BLAST of mRNA_Ecto-sp9_F_contig10209.236.1 vs.
Match: RF_PROK_I (domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3Q8_THAPS)

HSP 1 Score: 115 bits (287), Expect = 7.210e-28
Identity = 62/125 (49.60%), Postives = 84/125 (67.20%), Query Frame = 0
Query:  214 VPEDQLQVSFTRASGAGGQNVNKVSTKVEMRFVVSEAEWLPYDVRLRLARQEKGRMNNKGELVVTAQEFRQEKQNRSQALAKLREMINEAWEPAKERKMRTGIGKKGKAIRKQ--DKLHRSKASR 336
            +PEDQ+Q SF R+SGAGGQNVNKV TKVE+RF +  A W+P +VR RL   E  R+NN G + V +QE+R + QNR  AL KL +++  +W   K RKMR G+  K K  R++   K+ + KA+R
Sbjct:    3 IPEDQIQTSFARSSGAGGQNVNKVETKVELRFHLDSASWIPAEVRERLKTNEANRINNDGFMSVNSQEYRTQVQNRKDALKKLEDILRNSWARPKVRKMRKGLSAKTKENRREMKKKISQKKANR 127          
BLAST of mRNA_Ecto-sp9_F_contig10209.236.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BJ82_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.590e-26
Identity = 62/126 (49.21%), Postives = 85/126 (67.46%), Query Frame = 0
Query:  213 EVPEDQLQVSFTRASGAGGQNVNKVSTKVEMRFVVSEAEWLPYDVRLRLARQEKGRMNNKGELVVTAQEFRQEKQNRSQALAKLREMINEAWEPAKERKMRTGIGKKGKAIRKQDKLHRSKASRTR 338
            +VPE++L  +FT + G GGQNVNKV+T+   RF V  A+WLP +VR RL  Q++GRMN K EL+V++QE R +++NR + L KL+ ++ EA    KER + T I KKGK  R+  K HRSK    R
Sbjct:   75 DVPENRLVFTFTPSQGPGGQNVNKVNTRAVARFHVPSADWLPVEVRGRLVEQQRGRMNQKDELIVSSQEHRTQRRNRVECLLKLKLLVAEAAVEPKERNLYTDISKKGKGQRRDAKRHRSKVKENR 200          
BLAST of mRNA_Ecto-sp9_F_contig10209.236.1 vs.
Match: RF_PROK_I (domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R9L2_THAOC)

HSP 1 Score: 114 bits (286), Expect = 2.590e-26
Identity = 63/128 (49.22%), Postives = 88/128 (68.75%), Query Frame = 0
Query:  214 VPEDQLQVSFTRASGAGGQNVNKVSTKVEMRFVVSEAEWLPYDVRLRLARQEKGRMNNKGELVVTAQEFRQEKQNRSQALAKLREMINEAWEPAKERKMRTGIGKKGKAIRKQDKLHRS--KASRTRL 339
            +PE++LQ++F RASGAGGQNVNKV+TKVEMRF +  AEW+P +VR RL   E  R+NN+G + +T+QE R + QNR  A+ KL++++  +W   K RK R G  +K K  R ++K   S  K SR R+
Sbjct:  127 IPENELQITFARASGAGGQNVNKVNTKVEMRFHLPSAEWIPSEVRDRLQNNEANRINNEGYMSITSQEHRTQMQNRKDAMKKLQDIVRNSWARPKVRKTRKGPTRKAKEKRLENKKKNSLKKQSRGRV 254          
BLAST of mRNA_Ecto-sp9_F_contig10209.236.1 vs.
Match: Peptidyl-tRNA (hydrolase ICT1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFY9_FISSO)

HSP 1 Score: 113 bits (283), Expect = 3.650e-26
Identity = 59/120 (49.17%), Postives = 85/120 (70.83%), Query Frame = 0
Query:  213 EVPEDQLQVSFTRASGAGGQNVNKVSTKVEMRFVVSEAEWLPYDVRLRLARQEKGRMNNKGELVVTAQEFRQEKQNRSQALAKLREMINEAWEPAKERKMRTGIGKKGKAIRKQDKLHRS 332
            ++PE+ L  SF R+SGAGGQNVNKV+++V++R  V+EA W+PY+VR RL +Q+  R++ +G L + AQE R +  NR  A+ KLR+M+ +AW   KER++R GI  K K  RK+ K  RS
Sbjct:   98 DIPEENLDFSFVRSSGAGGQNVNKVNSQVQLRLNVNEAYWIPYEVRQRLMQQQANRISKEGVLTIAAQEHRTQVANRKAAIQKLRDMLLQAWPRPKERRIRQGISIKTKEQRKEFKRRRS 217          
BLAST of mRNA_Ecto-sp9_F_contig10209.236.1 vs.
Match: RF_PROK_I (domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y1J9_DIALT)

HSP 1 Score: 109 bits (272), Expect = 2.600e-25
Identity = 59/125 (47.20%), Postives = 84/125 (67.20%), Query Frame = 0
Query:  214 VPEDQLQVSFTRASGAGGQNVNKVSTKVEMRFVVSEAEWLPYDVRLRLARQEKGRMNNKGELVVTAQEFRQEKQNRSQALAKLREMINEAWEPAKERKMRTGIGKKGKAIRKQDKLHRSKASRTR 338
            VP+ ++Q++ +R+SG GGQNVNKV+TKVE+RF V  A+WLP DV+ RL      RMN +GEL+VTA E R +  N   AL K++E+++ A  P KER+MR G+    K  R +DK   +K  ++R
Sbjct:   33 VPKAKMQIAHSRSSGPGGQNVNKVNTKVELRFNVRAADWLPADVKARLIDDNSNRMNKEGELIVTASESRSQSANMDSALRKVQELVDVACIPPKEREMRVGLSAVTKRQRVEDKRRTAKVKQSR 157          
BLAST of mRNA_Ecto-sp9_F_contig10209.236.1 vs.
Match: Peptidyl-tRNA (hydrolase ICT1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KKA6_FISSO)

HSP 1 Score: 111 bits (277), Expect = 2.620e-25
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 0
Query:  213 EVPEDQLQVSFTRASGAGGQNVNKVSTKVEMRFVVSEAEWLPYDVRLRLARQEKGRMNNKGELVVTAQEFRQEKQNRSQALAKLREMINEAWEPAKERKMRTGIGKKGKAIRKQDKLHRS 332
            ++PE+ L  SF R+SGAGGQNVNKV+++V++R  V EA W+PY+VR RL +Q+  R++ +G L + AQE R +  NR  A+ KL+ M+ +AW   KER+MR GI  K K  RK+ K  RS
Sbjct:   97 DIPEENLDFSFVRSSGAGGQNVNKVNSQVQVRLNVHEAYWIPYEVRQRLLQQQANRISKEGVLTIAAQEHRTQVANRKAAVQKLQNMLLQAWPRPKERRMRQGISIKTKEQRKEFKRRRS 216          
BLAST of mRNA_Ecto-sp9_F_contig10209.236.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q7S5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.890e-24
Identity = 60/131 (45.80%), Postives = 85/131 (64.89%), Query Frame = 0
Query:  208 PKSFGEVPEDQLQVSFTRASGAGGQNVNKVSTKVEMRFVVSEAEWLPYDVRLRLARQEKGRMNNKGELVVTAQEFRQEKQNRSQALAKLREMINEAWEPAKERKMRTGIGKKGKAIRKQDKLHRSKASRTR 338
            PK+   +P DQL+ SF R+SGAGGQNVNK+STKVE+RF VS A W+P++VR RL+ Q   RMN +G + + +QEFR +  N+   + KL +++  A+   K RKMR G+ +  K    +DK  RS   + R
Sbjct:  170 PKTL-SIPLDQLEFSFVRSSGAGGQNVNKLSTKVELRFHVSSANWIPFEVRQRLSSQNANRMNKEGYMTLNSQEFRTQAMNKKDVVNKLEDLVLLAYPRPKVRKMRKGVSQAAKRRNLEDKKRRSSTKQNR 299          
BLAST of mRNA_Ecto-sp9_F_contig10209.236.1 vs.
Match: Peptidyl-trna (hydrolase mitochondrial-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6I3_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.800e-24
Identity = 61/138 (44.20%), Postives = 91/138 (65.94%), Query Frame = 0
Query:  203 PYTPRPKSFGEVPEDQLQVSFTRASGAGGQNVNKVSTKVEMRFVVSEAEWLPYDVRLRLARQEKGRMNNKGELVVTAQEFRQEKQNRSQALAKLREMINEAWEPAKERKMRTGIGKKGKAIRKQDKLHRS--KASRTR 338
            PY   P++  E+P D+L  S++R+SG GGQNVNK++T+VE+RF V +A+W+P D+R R   Q++ R+N  GE V+++QE R + +NR + + KL E +  A    K R MRTG+ +  K  R ++K  RS  KASR R
Sbjct:   71 PYCEMPRNGFEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRNMRTGLTEWEKENRLREKKKRSEKKASRRR 208          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10209.236.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RF_PROK_I2.610e-12391.80domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Hypothetical2.330e-2949.22protein n=1 Tax=Skeletonema marinoi TaxID=267567 R... [more]
RF_PROK_I7.210e-2849.60domain-containing protein (Fragment) n=1 Tax=Thala... [more]
Hypothetical1.590e-2649.21protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
RF_PROK_I2.590e-2649.22domain-containing protein n=2 Tax=Thalassiosira oc... [more]
Peptidyl-tRNA3.650e-2649.17hydrolase ICT1 n=1 Tax=Fistulifera solaris TaxID=1... [more]
RF_PROK_I2.600e-2547.20domain-containing protein n=1 Tax=Diacronema luthe... [more]
Peptidyl-tRNA2.620e-2549.17hydrolase ICT1 n=1 Tax=Fistulifera solaris TaxID=1... [more]
Hypothetical1.890e-2445.80protein n=2 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Peptidyl-trna3.800e-2444.20hydrolase mitochondrial-like protein n=1 Tax=Nanno... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 279..302
NoneNo IPR availableGENE3D3.30.160.20coord: 209..340
e-value: 3.2E-35
score: 122.8
NoneNo IPR availablePANTHERPTHR11075:SF54PEPTIDYL-TRNA HYDROLASE ICT1, MITOCHONDRIALcoord: 211..335
NoneNo IPR availablePANTHERPTHR11075PEPTIDE CHAIN RELEASE FACTORcoord: 211..335
NoneNo IPR availableSUPERFAMILY110916Peptidyl-tRNA hydrolase domain-likecoord: 213..307
IPR000352Peptide chain release factor class IPFAMPF00472RF-1coord: 213..335
e-value: 6.6E-21
score: 74.4
IPR000352Peptide chain release factor class IPROSITEPS00745RF_PROK_Icoord: 225..241

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10209contigEcto-sp9_F_contig10209:1897..4582 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10209.236.1mRNA_Ecto-sp9_F_contig10209.236.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig10209 1897..4582 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig10209.236.1 ID=prot_Ecto-sp9_F_contig10209.236.1|Name=mRNA_Ecto-sp9_F_contig10209.236.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=342bp
HACTHTGRRSPYPLMRGGRSRAIMSLAFVSRRGLSLMTPFPTMLVRSRPA
FTTSVPAAVPPSSRGVLARTTWSNTCGNHHHPVQVAAQLRALVAPLSMAA
AKSGTGGGSPKKSAGSSNKRKPRHASSSATSSPRGAKRRLSSGPEGGSAA
GPRTVPWGTGAAEGVGGRGRDQASAGGRGAAVSAGAGRGGRGTIARGLHD
RRPYTPRPKSFGEVPEDQLQVSFTRASGAGGQNVNKVSTKVEMRFVVSEA
EWLPYDVRLRLARQEKGRMNNKGELVVTAQEFRQEKQNRSQALAKLREMI
NEAWEPAKERKMRTGIGKKGKAIRKQDKLHRSKASRTRLFHR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000352Pep_chain_release_fac_I