prot_Ecto-sp9_F_contig10101.140.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig10101.140.1
Unique Nameprot_Ecto-sp9_F_contig10101.140.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length675
Homology
BLAST of mRNA_Ecto-sp9_F_contig10101.140.1 vs.
Match: HRDC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP7_9PHAE)

HSP 1 Score: 588 bits (1515), Expect = 6.470e-203
Identity = 397/559 (71.02%), Postives = 405/559 (72.45%), Query Frame = 0
Query:  151 MNGATTAAGLPSDHLRSGSSTTAVVDGNLPARSPVRSGACSPAAATQLAWEPWMSEWDDPEDCHRRERSRSGSLFRPDLESVHEGARNSAFGAGLDSAVTAAFLEDEEDYG----GDG-------EERRFGDLDGAGAXXXXXXXXXXXXXXXXDLWEGWGESWGVTEGVEDTTTLTAATATGGHTPKDEMSQSFTAEREKEVDAAXXXXXXXXXXXXXXPASTSQAAGPVDSSLAGDLNSPPPEAGAAAYDATNTVAPEDDRPAAEPDPAAVVLTDGILLMWKSLSRAHVATAVLWRPSREAKRGDAHSERHFRTAEQRLRPPRWSEINVRVYEDIFLWRDRTARRLDDGVAYVCPGDTLIEVALAMPTTVDGLRRVAVPLSPVLGNGDTPEAAELVRVVRVALGLTGEDDRGRGAL----------VVPVEEEPEEEAXXXXXXXXXXXXXXGQPADEGGAXXXXXXXXXXXXXXXXXXXXXXRVVGXXXXXXXX--------------HRARGWRIGGRWGSRRDGVVYSNTVVALAAATAATAGVIVAVWKRRKA 674
            MNGA  AAGL SDHLRSGSST AVVDGNLPARSPVRSGACSPAAATQLAWEPW+SEWDDPEDCHRRERSRSGS FRPDLES+HEGARNSAFGAGLDSAV AAFLEDE DYG    GDG       E R FGDLDG G XXXXXXXXXXXXX   DLWEG                                                                      PVDSSLAGDLNSPPPEAGAAAYDATNTV PED +PAAEPDPA VVLTDGILLMWKSLSRAHVATAVLWRPSREAKR DAHSERHFRTAEQRL+PPRWSEINVRVYEDIFLWRDRTARRLDDGVAYVCPGDTLIEVALAMPTTVDGLRRVAVPLSPVLGNGDTPEAAELVRVVR  LGL GED RG GAL          V+PVEEE EEEA   XXXX    XXX         XXXXXXXXXXXXXXXXXXXX X + G   XXXXX              H +RGWR+GGRWG RRDGVVYS TVVALAAATAATAGVIVAVWKRRKA
Sbjct:    1 MNGAAAAAGLASDHLRSGSSTAAVVDGNLPARSPVRSGACSPAAATQLAWEPWVSEWDDPEDCHRRERSRSGSFFRPDLESIHEGARNSAFGAGLDSAVAAAFLEDEGDYGCEVEGDGAIGLANGEARSFGDLDGDGXXXXXXXXXXXXXXE--DLWEG----------------------------------------------------------------------PVDSSLAGDLNSPPPEAGAAAYDATNTVVPEDGQPAAEPDPAVVVLTDGILLMWKSLSRAHVATAVLWRPSREAKREDAHSERHFRTAEQRLKPPRWSEINVRVYEDIFLWRDRTARRLDDGVAYVCPGDTLIEVALAMPTTVDGLRRVAVPLSPVLGNGDTPEAAELVRVVRARLGLPGEDGRGPGALGPPVDDGGALVLPVEEEREEEALRPXXXXDRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXELEGVARXXXXXXXXXXXXXXXXXXEHWSRGWRLGGRWGCRRDGVVYSKTVVALAAATAATAGVIVAVWKRRKA 487          
BLAST of mRNA_Ecto-sp9_F_contig10101.140.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC3_ECTSI)

HSP 1 Score: 444 bits (1142), Expect = 6.470e-149
Identity = 258/308 (83.77%), Postives = 262/308 (85.06%), Query Frame = 0
Query:    1 MSPSISCVPPSAMAQEAVHALGEKQSALGKVLINAGVRELHDIAGMKQDMKSCDWRERPLSEEKLVYARCDSHYLIPLWRLLRARLLAADTLSSRQDGGEEKDGREEAALREIKRRLDEDQRREEGPRQMQLPPQSPPPSTEGTGSGVVAMNGATTAAGLPSDHLRSGSSTTAVVDGNLPARSPVRSGACSPAAATQLAWEPWMSEWDDPEDCHRRERSRSGSLFRPDLESVHEGARNSAFGAGLDSAVTAAFLEDEEDYGGD-----------GEERRFGDLDGAGAXXXXXXXXXXXXXXXXDLWE 297
            MSPSISCVPPSAMAQEAVHALG KQSALGKVLI+AGVRE HDIAGMKQDMKSCDWRERPLSEEKLVYARCDSHYLIPLWRLLRARLLAADT SSRQDGGEEKDGREEAALREIKRRLD                        G GSGVVAMNGATTAAGL SDHLRSGSSTTAVVDGNLPARSPVRSGACSPAAATQ AWEPWMSEWDDPEDCHRRERSRSGS FRPDLES+HEGARN+A GAGLDSAVTAAFLEDEEDYGG+           GE RRFGDLDGAG XXXXXXXXXXXXXXX DLWE
Sbjct:    1 MSPSISCVPPSAMAQEAVHALGGKQSALGKVLIDAGVREPHDIAGMKQDMKSCDWRERPLSEEKLVYARCDSHYLIPLWRLLRARLLAADTFSSRQDGGEEKDGREEAALREIKRRLDXXXXXXXXXXXXXXXXXXXXXXXGGAGSGVVAMNGATTAAGLASDHLRSGSSTTAVVDGNLPARSPVRSGACSPAAATQSAWEPWMSEWDDPEDCHRRERSRSGSFFRPDLESIHEGARNNACGAGLDSAVTAAFLEDEEDYGGEVVGDGAIGLANGEARRFGDLDGAGXXXXXXXXXXXXXXXXEDLWE 308          
BLAST of mRNA_Ecto-sp9_F_contig10101.140.1 vs.
Match: HRDC (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ9_ECTSI)

HSP 1 Score: 346 bits (888), Expect = 4.240e-112
Identity = 233/254 (91.73%), Postives = 234/254 (92.13%), Query Frame = 0
Query:  421 MWKSLSRAHVATAVLWRPSREAKRGDAHSERHFRTAEQRLRPPRWSEINVRVYEDIFLWRDRTARRLDDGVAYVCPGDTLIEVALAMPTTVDGLRRVAVPLSPVLGNGDTPEAAELVRVVRVALGLTGEDDRGRGALVVPVEEEPEEEAXXXXXXXXXXXXXXGQPADEGGAXXXXXXXXXXXXXXXXXXXXXXRVVGXXXXXXXXHRARGWRIGGRWGSRRDGVVYSNTVVALAAATAATAGVIVAVWKRRKA 674
            MWKSLSRAHVATAVLWRPSREAK  DAHSERHFRTAEQRLRPPRWSEINVRVYEDIF+WRDRTARRLDDGVAYVCPGDTLIEVALAMPTTVDGLRRVAVPLSPVLGNGDTPEAAELVRVVRVALGLTGEDDRGRGALVVPVEEEPEEEAXXXXXXXXXXXXXX           XXXXXXXXXXXXXXXXXXXX    XXXXXXXX  ARGWRIGGRWGSRRDGVVYS TVVALAAATAATAGVIVAVWKRRKA
Sbjct:    1 MWKSLSRAHVATAVLWRPSREAKGEDAHSERHFRTAEQRLRPPRWSEINVRVYEDIFVWRDRTARRLDDGVAYVCPGDTLIEVALAMPTTVDGLRRVAVPLSPVLGNGDTPEAAELVRVVRVALGLTGEDDRGRGALVVPVEEEPEEEAXXXXXXXXXXXXXX-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGWRIGGRWGSRRDGVVYSKTVVALAAATAATAGVIVAVWKRRKA 243          
BLAST of mRNA_Ecto-sp9_F_contig10101.140.1 vs.
Match: R3H (domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK06_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 2.770e-55
Identity = 108/121 (89.26%), Postives = 111/121 (91.74%), Query Frame = 0
Query:   15 QEAVHALGEKQSALGKVLINAGVRELHDIAGMKQDMKSCDWRERPLSEEKLVYARCDSHYLIPLWRLLRARLLAADTLSSRQDGGEEKDGREEAALREIKRRLDEDQRREEGPRQMQLPPQ 135
            +EAVHALGEKQSAL KVLINAGVRE HD+AGMKQDMKSCDWRERPLSEEKLVYARCDSHYLIPLWRLLRARLLAADTL SRQDGGEE+DGREEAAL EIK RLDED R   G RQMQLPPQ
Sbjct:  435 EEAVHALGEKQSALEKVLINAGVREPHDMAGMKQDMKSCDWRERPLSEEKLVYARCDSHYLIPLWRLLRARLLAADTLPSRQDGGEEEDGREEAALLEIKHRLDEDHRXXXGARQMQLPPQ 555          
BLAST of mRNA_Ecto-sp9_F_contig10101.140.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUB7_HETAK)

HSP 1 Score: 89.7 bits (221), Expect = 4.430e-16
Identity = 47/117 (40.17%), Postives = 66/117 (56.41%), Query Frame = 0
Query:  425 LSRAHVATAVLWRPSREAKRGDAHSERHFRTAEQRLRPPRWSEINVRVYEDIFLWRDRTARRLDDGVAYVCPGDTLIEVALAMPTTVDGLRRVAVPLSPVLGNGDTPEAAELVRVVR 541
            L R     A LW P  + K GD   +R F+ A +  R  RW + +   +  ++LWRDRTAR LDDG  Y+C  +TL+ VA  +P  +  LR V +PLSP LG+G     A L+R ++
Sbjct:   30 LLRCQKGVARLWEPKDKCKPGDHRRQRAFKAARRDRR--RWGDRHSAAFAALYLWRDRTARELDDGPHYLCSVETLVAVAQRLPPDLAALRSVQLPLSPALGDGGNALGAALLRTIK 144          
BLAST of mRNA_Ecto-sp9_F_contig10101.140.1 vs.
Match: 3'-5' (exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS53_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.350e-8
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 0
Query:   15 QEAVHALGEKQSALGKVLINAGVRELHDIAGMKQDMK 51
            +EAVHALG KQSALGKVLI+AGVRE HDIAGMKQDMK
Sbjct:  169 EEAVHALGGKQSALGKVLIDAGVREPHDIAGMKQDMK 205          
BLAST of mRNA_Ecto-sp9_F_contig10101.140.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4D024_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 8.640e-5
Identity = 69/249 (27.71%), Postives = 97/249 (38.96%), Query Frame = 0
Query:  295 LWEGWGESWGVTE--GVEDTTTLTAATATGGHTPKDEMSQSFTAEREKEVDAAXXXXXXXXXXXXXXPASTSQAAGPVDSSLAGDLNSPPPEAGAAAYDATNTVAPEDDRPAAEPDPAAVVL---------------TDGILLMWKSLSRAHVATAVLWRPSREAKRGDAHSERHFRTAEQRLRPPRWS---EINVRVYEDIFLWRDRTARRLDDGVAYVCPGDTLIEVALAMPTTVDGLRRVAVPLSP 523
            LW+GWGE  G +   GV       A  ATGG      +     A      DAA              P    +A      S +G L  P P A  AA     TVA E +       P A V+                D +++++    R     A LW P R         E + R  E      +W    ++ VRV++++FLWRDR AR  D+   Y+    +L+  A  +PTT+    +V+ PLSP
Sbjct:   21 LWDGWGEEPGASADPGV-------APPATGG------VGAEAAAGNGNPSDAAKGDVFSPPHHL---PMLRGRAVDDRGESFSGHLQQPQPRAAQAAPP-LQTVASEGELGNEGEAPEAPVVGRARSVTLDEAPQECVDALIMVFTKSQRQ---CAKLWLPRRIT------PESYKRVKEYNEVAKKWERKKDVRVRVFQELFLWRDRVAREEDESPEYIIDNRSLLTAAKLLPTTLVDTLKVSCPLSP 243          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10101.140.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
HRDC6.470e-20371.02domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized6.470e-14983.77protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
HRDC4.240e-11291.73domain-containing protein n=1 Tax=Ectocarpus silic... [more]
R3H2.770e-5589.26domain-containing protein (Fragment) n=1 Tax=Ectoc... [more]
Hypothetical4.430e-1640.17protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
3'-5'1.350e-889.19exonuclease domain-containing protein n=1 Tax=Ecto... [more]
Hypothetical8.640e-527.71protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.150.80coord: 459..550
e-value: 4.3E-11
score: 44.5
NoneNo IPR availableGENE3D3.30.420.500coord: 13..116
e-value: 1.6E-11
score: 45.8
NoneNo IPR availablePANTHERPTHR12124POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATEDcoord: 51..101
coord: 468..524
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..650
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 670..674
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 651..669
NoneNo IPR availableTMHMMTMhelixcoord: 646..668
IPR002121HRDC domainPFAMPF00570HRDCcoord: 471..517
e-value: 2.1E-7
score: 30.9
IPR002121HRDC domainPROSITEPS50967HRDCcoord: 466..550
score: 10.648
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 465..542
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 51..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10101contigEcto-sp9_F_contig10101:1532..4595 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10101.140.1mRNA_Ecto-sp9_F_contig10101.140.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig10101 1532..4595 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig10101.140.1 ID=prot_Ecto-sp9_F_contig10101.140.1|Name=mRNA_Ecto-sp9_F_contig10101.140.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=675bp
MSPSISCVPPSAMAQEAVHALGEKQSALGKVLINAGVRELHDIAGMKQDM
KSCDWRERPLSEEKLVYARCDSHYLIPLWRLLRARLLAADTLSSRQDGGE
EKDGREEAALREIKRRLDEDQRREEGPRQMQLPPQSPPPSTEGTGSGVVA
MNGATTAAGLPSDHLRSGSSTTAVVDGNLPARSPVRSGACSPAAATQLAW
EPWMSEWDDPEDCHRRERSRSGSLFRPDLESVHEGARNSAFGAGLDSAVT
AAFLEDEEDYGGDGEERRFGDLDGAGAGGGGGVAASEEDDEDEDLWEGWG
ESWGVTEGVEDTTTLTAATATGGHTPKDEMSQSFTAEREKEVDAAAAAAA
VGAAAAAASPASTSQAAGPVDSSLAGDLNSPPPEAGAAAYDATNTVAPED
DRPAAEPDPAAVVLTDGILLMWKSLSRAHVATAVLWRPSREAKRGDAHSE
RHFRTAEQRLRPPRWSEINVRVYEDIFLWRDRTARRLDDGVAYVCPGDTL
IEVALAMPTTVDGLRRVAVPLSPVLGNGDTPEAAELVRVVRVALGLTGED
DRGRGALVVPVEEEPEEEALGPPAEDNRGRGALGQPADEGGALGLPVEEE
REWGALGMPADEGGRVVGALGLPAEEHRARGWRIGGRWGSRRDGVVYSNT
VVALAAATAATAGVIVAVWKRRKA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002121HRDC_dom
IPR010997HRDC-like_sf
IPR012337RNaseH-like_sf