prot_Ecto-sp9_F_contig1008.116.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig1008.116.1
Unique Nameprot_Ecto-sp9_F_contig1008.116.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length47
Homology
BLAST of mRNA_Ecto-sp9_F_contig1008.116.1 vs.
Match: Putative (hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.080e-20
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0
Query:    6 DPPGDCLRIRLVVAVLEGCGSYFVRGAGLDKLSKFLGVFQRY 47
            DPPGDCLRIRLVVAVLEGCGSYFVRGAGLDKLSKFLGVFQRY
Sbjct: 1250 DPPGDCLRIRLVVAVLEGCGSYFVRGAGLDKLSKFLGVFQRY 1291          
BLAST of mRNA_Ecto-sp9_F_contig1008.116.1 vs.
Match: regulator (of nonsense transcripts UPF2-like isoform X1 n=7 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P6AKE6_DURZI)

HSP 1 Score: 63.2 bits (152), Expect = 2.140e-10
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 0
Query:    1 FCFVVDPPGDCLRIRLVVAVLEGCGSYFVRGAGLDKLSKFLGVFQRY 47
            +C+ +DPP DC RIR+V+ +L+ CG YF RG+   KL +FL  FQRY
Sbjct:  816 YCYALDPPEDCFRIRMVITLLQTCGHYFDRGSSKRKLDRFLIHFQRY 862          
BLAST of mRNA_Ecto-sp9_F_contig1008.116.1 vs.
Match: Armadillo-type (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.460e-10
Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = 0
Query:    6 DPPGDCLRIRLVVAVLEGCGSYFVRGAGLDKLSKFLGVFQRY 47
            DPPGDCLRIRLVV +LE C  YFV G    +L KFL  FQRY
Sbjct:  817 DPPGDCLRIRLVVQLLEACAEYFVVGQSRPRLDKFLMHFQRY 858          
BLAST of mRNA_Ecto-sp9_F_contig1008.116.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VH95_DUNTE)

HSP 1 Score: 53.5 bits (127), Expect = 5.330e-7
Identity = 23/42 (54.76%), Postives = 28/42 (66.67%), Query Frame = 0
Query:    6 DPPGDCLRIRLVVAVLEGCGSYFVRGAGLDKLSKFLGVFQRY 47
            DPP D  RIRL++A+LEGCG YF  G    +L +FL  FQ Y
Sbjct:  374 DPPNDYFRIRLILALLEGCGQYFGSGPAGARLDRFLTFFQAY 415          
BLAST of mRNA_Ecto-sp9_F_contig1008.116.1 vs.
Match: Armadillo-type (protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q907_9CHLO)

HSP 1 Score: 52.4 bits (124), Expect = 1.370e-6
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 0
Query:    5 VDPPGDCLRIRLVVAVLEGCGSYFVRGAGLDKLSKFLGVFQRY 47
            +DPP D  RIRLV+A+L  CGSYF +GA   +L +FL   Q Y
Sbjct:  880 LDPPDDFFRIRLVIALLSTCGSYFSKGAAGRRLDRFLTFMQAY 922          
BLAST of mRNA_Ecto-sp9_F_contig1008.116.1 vs.
Match: Uncharacterized (protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VWZ6_TETOB)

HSP 1 Score: 52.4 bits (124), Expect = 1.370e-6
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 0
Query:    5 VDPPGDCLRIRLVVAVLEGCGSYFVRGAGLDKLSKFLGVFQRY 47
            +DPP D  RIRLV+A+L  CGSYF +GA   +L +FL   Q Y
Sbjct:  865 LDPPDDFFRIRLVIALLSTCGSYFSKGAAGRRLDRFLTFMQAY 907          
BLAST of mRNA_Ecto-sp9_F_contig1008.116.1 vs.
Match: MIF4G (domain-containing protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699Z3E2_HAELA)

HSP 1 Score: 48.1 bits (113), Expect = 4.290e-5
Identity = 20/43 (46.51%), Postives = 28/43 (65.12%), Query Frame = 0
Query:    5 VDPPGDCLRIRLVVAVLEGCGSYFVRGAGLDKLSKFLGVFQRY 47
            +DP  D  RIRLV+ +L+ CG+YF +G    +L +FL  FQ Y
Sbjct:   51 LDPADDYFRIRLVIGLLDTCGTYFGQGVAGSRLDRFLTFFQAY 93          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1008.116.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Putative1.080e-20100.00hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_E... [more]
regulator2.140e-1053.19of nonsense transcripts UPF2-like isoform X1 n=7 T... [more]
Armadillo-type5.460e-1066.67protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical5.330e-754.76protein (Fragment) n=1 Tax=Dunaliella tertiolecta ... [more]
Armadillo-type1.370e-653.49protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=... [more]
Uncharacterized1.370e-653.49protein n=2 Tax=Tetradesmus obliquus TaxID=3088 Re... [more]
MIF4G4.290e-546.51domain-containing protein n=1 Tax=Haematococcus la... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016021MIF4G-like domain superfamilyGENE3D1.25.40.180coord: 3..47
e-value: 3.0E-10
score: 41.7
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 4..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1008contigEcto-sp9_F_contig1008:538..678 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1008.116.1mRNA_Ecto-sp9_F_contig1008.116.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig1008 538..678 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig1008.116.1 ID=prot_Ecto-sp9_F_contig1008.116.1|Name=mRNA_Ecto-sp9_F_contig1008.116.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=47bp
FCFVVDPPGDCLRIRLVVAVLEGCGSYFVRGAGLDKLSKFLGVFQRY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016021MIF4-like_sf
IPR016024ARM-type_fold