prot_Ecto-sp9_F_contig10076.114.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig10076.114.1
Unique Nameprot_Ecto-sp9_F_contig10076.114.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length219
Homology
BLAST of mRNA_Ecto-sp9_F_contig10076.114.1 vs.
Match: PsbP (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSF3_ECTSI)

HSP 1 Score: 326 bits (836), Expect = 4.770e-111
Identity = 176/183 (96.17%), Postives = 177/183 (96.72%), Query Frame = 0
Query:   36 RLDFLRGAXXXXXXXXXXXXXGFALLPAAGNAQTFTDDALGFIFDVPDGWERNDAEISGRRKIVVYTSPTTPGANAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASGVSSRMVESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQLATITVQCNESDYAKVGKTIDSLIASVTKKK 218
            RLDFLRGAXXXXXXXXX    GFALLPAAGNAQTFTDDALGF FDVPDGWERNDAEISGRRKIVVYTSPTTPGANAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASGVSSRM+ESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQLATIT QCNESDYAKVGKTIDSLIASVTKKK
Sbjct:   52 RLDFLRGAXXXXXXXXX----GFALLPAAGNAQTFTDDALGFNFDVPDGWERNDAEISGRRKIVVYTSPTTPGANAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASGVSSRMLESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQLATITAQCNESDYAKVGKTIDSLIASVTKKK 230          
BLAST of mRNA_Ecto-sp9_F_contig10076.114.1 vs.
Match: PsbP (domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDA3_9STRA)

HSP 1 Score: 145 bits (367), Expect = 5.980e-41
Identity = 72/149 (48.32%), Postives = 99/149 (66.44%), Query Frame = 0
Query:   61 LPA-AGNAQTFTDDALGFIFDVPDGWERNDAEISGRRKIVVYTSPTTPGANAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASGVSSRMVESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQLATITVQCNESDYAKVGKTID 208
            LPA A     + DD   F F+VP GW + + EISGRRK+V++TS  +  ANAF+A TP RGDFT+LGSFGT DEVS+T++P   G+S  M+   +  + Y YDYI+ QEGRPEKH+K++W +      L T+T QC+E++Y      +D
Sbjct:    8 LPALAAGTTEYVDDKFKFRFEVPAGWTQTETEISGRRKVVIWTSDGS--ANAFIAVTPVRGDFTSLGSFGTADEVSQTLIPNGKGISGEMLNVKSKNSMYYYDYIIAQEGRPEKHLKSVWSVVSGDA-LVTLTAQCDEANYPAYASQMD 153          
BLAST of mRNA_Ecto-sp9_F_contig10076.114.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S113_HETAK)

HSP 1 Score: 144 bits (363), Expect = 2.260e-39
Identity = 71/156 (45.51%), Postives = 102/156 (65.38%), Query Frame = 0
Query:   61 LPA-AGNAQTFTDDALGFIFDVPDGWERNDAEISGRRKIVVYTSPTTPGANAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASGVSSRMVESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQ--LATITVQCNESDYAKVGKTIDSLIAS 213
            LPA A +    TD    + F VP GWE+++A ISG R + ++ +P  P ANAFVA TP RGD+T+LGSFG LD V  TV+P+  G+ SR +ES + + +Y YDY V QEGRPEK +KT++ + P++    L T T QC+ +DY + G  + ++ +S
Sbjct:   69 LPAVAEDLMKVTDTKGAYSFQVPPGWEKSEAAISGGRTVTIFAAPGRPAANAFVAATPLRGDYTSLGSFGNLDYVESTVVPKGPGIESRCLESRSQRGTYFYDYTVKQEGRPEKRLKTIFAVVPDEFSPVLVTFTAQCDVADYEEYGTLLSAIASS 224          
BLAST of mRNA_Ecto-sp9_F_contig10076.114.1 vs.
Match: Hypothetical (protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EZ64_CHRCT)

HSP 1 Score: 117 bits (294), Expect = 4.070e-29
Identity = 55/159 (34.59%), Postives = 92/159 (57.86%), Query Frame = 0
Query:   67 AQTFTDDALGFIFDVPDGWERNDAEISGRRKIVVYTSPTTPGANAFVAYTPARGDFTTLGSFGTLDEVSKTVLP---------EASGVSSRMVESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQ---LATITVQCNESDYAKVGKTIDSLIAS 213
            A  + D   G  F VP GW   ++E+SG RK++  T P     N FVA+TP RGD+T+LGSFG +D V  T+LP         E  G+  +M+   T + +Y++DY+++Q G+P + ++T++ +   +G+   L T+T QC +  Y ++  T+  ++ S
Sbjct:   62 ANEYVDQEYGVSFVVPSGWSPEESELSGGRKLLAATDPADTDFNLFVAFTPIRGDYTSLGSFGNIDFVGSTILPQCPNGACTLETDGIRGKMIAQSTGRGAYIFDYLIEQTGQPSRRLRTLFSVQTVEGRGQNLITLTAQCRQERYDELSTTLREIVDS 220          
BLAST of mRNA_Ecto-sp9_F_contig10076.114.1 vs.
Match: Hypothetical (protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LK65_9EUKA)

HSP 1 Score: 114 bits (284), Expect = 1.650e-27
Identity = 55/158 (34.81%), Postives = 93/158 (58.86%), Query Frame = 0
Query:   68 QTFTDDALGFIFDVPDGWERNDAEISGRRKIVVYTSPTTPGANAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASG---------VSSRMVESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQ---LATITVQCNESDYAKVGKTIDSLIAS 213
            QT+ D   G  F +P GW   ++E+SG RK+V    P+    N F+AYTP   D+T+LGSFG +D V  T+LP+ +G         +  +M+   T  ++YV+DY ++Q G+P + ++T++ +  E G+   L T+T QC ++ Y ++  T+ ++I S
Sbjct:   77 QTYVDKEYGVSFGLPAGWNPTESELSGGRKLVAAADPSDVDFNIFIAYTPIAADYTSLGSFGNIDSVGLTLLPQCAGSSCSLASDGIQGKMISQATQSSAYVFDYSIEQIGQPIRRLRTLFSVQTEVGRGKNLVTLTAQCKQARYDELAPTLRAVIDS 234          
BLAST of mRNA_Ecto-sp9_F_contig10076.114.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FED2_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.910e-25
Identity = 59/151 (39.07%), Postives = 90/151 (59.60%), Query Frame = 0
Query:   64 AGNAQTFTDDALGFIFDVPDGWERNDAEISGRRKIVVYTSPTTPGANAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASGVSSRMVESYTYKNSYVYDYIVDQEG-RPEKHIKTMWVLFPEQGQLATITVQCNESDYAK----VGKTIDS 209
            A  +QT++D A G  F VP  W ++  +I G RK+V+Y  P     NAFV +TP   D+  LGSFGT+D V++TV+PE  G+ S +++S   K +Y +DY +     +P +H+ T++ + P Q  L T + Q  E++YAK    + K IDS
Sbjct:   59 AEESQTYSDLATGTSFSVPGTWSQS-VQILGDRKLVLYVDPENTETNAFVLFTPVAADYRGLGSFGTIDLVARTVIPEGPGIESNLLDSKQVKGNYFFDYTIKASADQPIRHLLTIFAVVPGQ-MLVTYSAQTTEANYAKEKALLMKAIDS 207          
BLAST of mRNA_Ecto-sp9_F_contig10076.114.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FU11_PHATC)

HSP 1 Score: 103 bits (257), Expect = 1.130e-23
Identity = 65/163 (39.88%), Postives = 92/163 (56.44%), Query Frame = 0
Query:   70 FTDDALGFIFDVPDGWERNDAEISGRRKIVVYTSPTTPGANAFVAYTPARGDFTTLGSFGTLDEVS-KTVLPEAS----GVSSRMVESYTYKNSYVYDYIVDQEG-RPEKHIKTMWVLFPEQGQ-------LATITVQCNESDYA-KVGKTIDSLIASVTKKK 218
            F D   GF  DVP  W R + ++S RR IVV+T P    A+ FVAYTP R DFT+LGSFG++D+V+ +T+LP+A      V + M+ + + K +Y +DY       +P  H +T++ L  +QG        L T+T QC E  YA K     DS++ S  K K
Sbjct:   63 FLDSRHGFTVDVPSQWSRTEQQLSDRRTIVVWTDPADARASVFVAYTPVRDDFTSLGSFGSVDQVAAQTILPKAQIAGVDVEATMLAAVSQKQAYFFDYRQAVPNVQPPTHFRTIFTL--QQGATGGAGAVLVTLTAQCPEELYATKYQSLFDSILDSYAKSK 223          
BLAST of mRNA_Ecto-sp9_F_contig10076.114.1 vs.
Match: Psbp (domain-containing protein chloroplastic-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLE2_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.300e-23
Identity = 55/158 (34.81%), Postives = 90/158 (56.96%), Query Frame = 0
Query:   64 AGNAQTFTDDALGFIFD-VPDGWERNDAEISGR----RKIVVYTSPTTPGANAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASGVSSRMVESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQ---LATITVQCNESDYAKVGKTIDSLIAS 213
            A   Q++ D+     F+ +P  W R D  I       R+IVV+  P++  AN F+AYTP + DFTTLG+FG++ +V+KT++P+  GV S+++     K +Y YDY++   G+P++H+ T++ L    G    LAT T  C E  +  +    D++  S
Sbjct:  109 AAGEQSYFDEKYKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPSSE-ANVFIAYTPVQPDFTTLGAFGSILDVAKTIVPKGRGVESKLLNYEGRKGAYYYDYVIQPAGQPKRHLTTLFALITISGTGECLATYTTSCLEDQWTVLEPVFDNITKS 265          
BLAST of mRNA_Ecto-sp9_F_contig10076.114.1 vs.
Match: Psbp (domain-containing protein chloroplastic-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J7U2_9EUKA)

HSP 1 Score: 101 bits (252), Expect = 5.260e-23
Identity = 54/158 (34.18%), Postives = 89/158 (56.33%), Query Frame = 0
Query:   69 TFTDDALGFIFDVPDGWERNDAEISGRRKIVVYTSPTTPGANAFVAYTPARGDFTTLGSFGTLDEVSKTVLPE---------ASG--VSSRMVESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQ--LATITVQCNESDYAKVGKTIDSLIAS 213
            ++ D+  G  F +P+G+     E++  R++V  T P     N F+A+TP R D+T+LGSFGT+D +  T+LP+         ASG  +   M+E  + K S+VYDY + Q+G P +H++++  +  +     L T+T QC E  +A V  T  ++I S
Sbjct:   56 SYKDERYGVSFLLPEGYVMKPQELADGRRLVTATDPNDDTTNVFIAFTPIRPDYTSLGSFGTIDFIGSTLLPQCGSNGACAFASGDDIEGVMLEQASVKGSFVYDYTIQQQGGPMRHLRSLLAIKADGAASVLITLTAQCLEPKHAAVAATFKAIIES 213          
BLAST of mRNA_Ecto-sp9_F_contig10076.114.1 vs.
Match: PsbP (domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FR83_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.460e-22
Identity = 57/151 (37.75%), Postives = 83/151 (54.97%), Query Frame = 0
Query:   62 PAAGNAQTFTDDALGFIFDVPDGWERNDAEISGRRKIVVYTSPTTPGANA-FVAYTPARGDFTTLGSFGTLDEVSK-TVLPEAS-----GVSSRMVESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQ-----LATITVQCNESDY 200
            P       + D+A  F  DVP  W +N+  +  RRKI +Y  P +      F+AYTP R DFTTLGSFG++DEV + T+LP++      GV + M+ +   K +Y +DY+     +P+ H +T++ L  E        L TITVQ  E+DY
Sbjct:   73 PTTPTLNNYKDEACKFSIDVPSDWIKNENTLPDRRKIDIYFKPDSDQKTLMFIAYTPVRSDFTTLGSFGSVDEVGQSTILPKSDLMGKDGVDATMLSAVAKKQAYFFDYVQTVPSQPKTHFQTIFSLAVEANGGKGNVLVTITVQAPEADY 223          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10076.114.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PsbP4.770e-11196.17domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
PsbP5.980e-4148.32domain-containing protein (Fragment) n=1 Tax=Tribo... [more]
Hypothetical2.260e-3945.51protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical4.070e-2934.59protein n=1 Tax=Chrysotila carterae TaxID=13221 Re... [more]
Hypothetical1.650e-2734.81protein n=1 Tax=Coccolithus braarudii TaxID=221442... [more]
Hypothetical2.910e-2539.07protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Predicted1.130e-2339.88protein n=2 Tax=Phaeodactylum tricornutum TaxID=28... [more]
Psbp4.300e-2334.81domain-containing protein chloroplastic-like prote... [more]
Psbp5.260e-2334.18domain-containing protein chloroplastic-like prote... [more]
PsbP3.460e-2237.75domain-containing protein n=1 Tax=Fragilariopsis c... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002683PsbP, C-terminalPFAMPF01789PsbPcoord: 67..213
e-value: 2.0E-14
score: 54.0
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichGENE3D3.40.1000.10coord: 63..215
e-value: 2.1E-12
score: 49.2
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichSUPERFAMILY55724Mog1p/PsbP-likecoord: 68..213
NoneNo IPR availablePANTHERPTHR31407:SF17PSBP DOMAIN-CONTAINING PROTEIN 3, CHLOROPLASTICcoord: 28..214
NoneNo IPR availablePANTHERPTHR31407FAMILY NOT NAMEDcoord: 28..214

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10076contigEcto-sp9_F_contig10076:254..4090 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10076.114.1mRNA_Ecto-sp9_F_contig10076.114.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig10076 254..4783 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig10076.114.1 ID=prot_Ecto-sp9_F_contig10076.114.1|Name=mRNA_Ecto-sp9_F_contig10076.114.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=219bp
PQAFVPPRPPPASSPPPPTTGGGGETASSSAAAASRLDFLRGAGATAAAA
AAAAAAGFALLPAAGNAQTFTDDALGFIFDVPDGWERNDAEISGRRKIVV
YTSPTTPGANAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASGVSSRMV
ESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQLATITVQCNESDY
AKVGKTIDSLIASVTKKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002683PsbP_C
IPR016123Mog1/PsbP_a/b/a-sand