prot_Ecto-sp9_F_contig10070.112.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig10070.112.1
Unique Name	prot_Ecto-sp9_F_contig10070.112.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	170

Homology

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BLAST of mRNA_Ecto-sp9_F_contig10070.112.1 vs.
Match: Chloride (channel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI8_ECTSI)

HSP 1 Score: 314 bits (804), Expect = 1.250e-107
Identity = 168/186 (90.32%), Postives = 168/186 (90.32%), Query Frame = 0

Query:    1 MSLSLTLGMCAITHFVCPCASGGGVPEMKAVLSGSSRPGLLSAQLVLVKMAGVITANAAGLSVGKEGPLIHITCAMADILMSTPWFKKVRLNNKQRLGILACACAAG------------------VAATFGSVFGGTLFSVEVTATAYMVDTLPATFLCAVVVAVVFWVSGQGELFALISDNTAQA 168
            MSLSLTLGMCAITHFVCPCASGGGVPEMKAVLSGSSRPGLLSAQLVLVKMAGVITANAAGLSVGKEGPLIHITCAMADILMSTPWFKKVRLNNKQRLGILACACAAG                  VAATFGSVFGGTLFSVEVTATAYMVDTLPATFLCAVVVAVVFWVSGQGELFALISDNTAQA
Sbjct:    1 MSLSLTLGMCAITHFVCPCASGGGVPEMKAVLSGSSRPGLLSAQLVLVKMAGVITANAAGLSVGKEGPLIHITCAMADILMSTPWFKKVRLNNKQRLGILACACAAGYVSWLISFTVPSFRVSLLVAATFGSVFGGTLFSVEVTATAYMVDTLPATFLCAVVVAVVFWVSGQGELFALISDNTAQA 186

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BLAST of mRNA_Ecto-sp9_F_contig10070.112.1 vs.
Match: Chloride (channel n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU91_9STRA)

HSP 1 Score: 183 bits (465), Expect = 6.930e-51
Identity = 92/164 (56.10%), Postives = 120/164 (73.17%), Query Frame = 0

Query:    4 SLTLGMCAITHFVCPCASGGGVPEMKAVLSGSSRPGLLSAQLVLVKMAGVITANAAGLSVGKEGPLIHITCAMADILMSTPWFKKVRLNNKQRLGILACACAAGVAATFGSVFGGTLFSVEVTATAYMVDTLPATFLCAVVVAVVFWVSGQGELFALISDNTAQ 167
            S  +    +T F+CP A+GGGVPEMK VLSGS  P LLS  LV+VK++G++ A AAGLSVGKEGPLIH++CA+A+++M+ P F+ +R+N   RL IL CACAAGVAA+FGS FG TLFSVE+T+T Y+V  L   F  A VVA+++W  G   +  L SDN +Q
Sbjct:  121 SFVMASAMLTQFLCPLAAGGGVPEMKTVLSGSINPALLSPLLVVVKLSGLVLAVAAGLSVGKEGPLIHVSCALAELVMAMPAFRYIRVNAPHRLEILTCACAAGVAASFGSAFGATLFSVEITSTCYIVSGLARAFATATVVALIYWCWGTEVISGLFSDNVSQ 284

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BLAST of mRNA_Ecto-sp9_F_contig10070.112.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K923_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 1.720e-49
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 0

Query:   76 MADILMSTPWFKKVRLNNKQRLGILACACAAGVAATFGSVFGGTLFSVEVTATAYMVDTLPATFLCAVVVAVVFWVSGQGELFALISDNTAQAQ 169
            MADILMSTPWFKKVRLNNKQRLGILACACAAGVAATFGSVFGGTLFSVEVTATAYMVDTLPATFLCAVVVAVVFWVSGQGELFALI DNT QAQ
Sbjct:    1 MADILMSTPWFKKVRLNNKQRLGILACACAAGVAATFGSVFGGTLFSVEVTATAYMVDTLPATFLCAVVVAVVFWVSGQGELFALIGDNTEQAQ 94

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BLAST of mRNA_Ecto-sp9_F_contig10070.112.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XT08_9STRA)

HSP 1 Score: 152 bits (384), Expect = 3.760e-41
Identity = 79/157 (50.32%), Postives = 103/157 (65.61%), Query Frame = 0

Query:   10 CAITHFVCPCASGGGVPEMKAVLSGSSRPGLLSAQLVLVKMAGVITANAAGLSVGKEGPLIHITCAMADILMSTPWFKKVRLNNKQRLGILACACAAGVAATFGSVFGGTLFSVEVTATAYMVDTLPATFLCAVVVAVVFWVSGQGELFALISDNTA 166
            CA TH +CP A+G GVPEM+ VLSG+ +P LL  ++++ K  G++ +  AGLSVGKEGP IHI C +AD+ +    FK+V   + +RL IL CACAAGVAATFG+ FGG LFS+EV   AY    L     CA   A+V+ + G  +  AL SDN A
Sbjct:  143 CAATHAICPEAAGSGVPEMRVVLSGALKPVLLQPRMLVAKACGLVLSLLAGLSVGKEGPFIHIACVVADMCLKFKPFKRVADRDSKRLDILMCACAAGVAATFGTPFGGVLFSIEVVTNAYFTKNLARAAFCATSGAIVYAIFGVEDSMALFSDNDA 299

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BLAST of mRNA_Ecto-sp9_F_contig10070.112.1 vs.
Match: Chloride (channel protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UA92_9STRA)

HSP 1 Score: 151 bits (382), Expect = 2.480e-39
Identity = 79/158 (50.00%), Postives = 108/158 (68.35%), Query Frame = 0

Query:   12 ITHFVCPCASGGGVPEMKAVLSGSSRPGLLSAQLVLVKMAGVITANAAGLSVGKEGPLIHITCAMADILMSTPWFKKVRLNNKQRLGILACACAAGVAATFGSVFGGTLFSVEVTATAYMVDTLPATFLCAVVVAVVFWVSGQGELFALISDNTAQAQ 169
            +T+ +CP + GGG+P++K VLSG     +LS +L+  KM G+I A  AGLSVGKEGP +H+  A++D LM    F+  R N  +RL IL CA AAGVA+TFG+ FGG LFS+EVTAT YMV  LP  F CA+  A+V+ ++G  + FAL +D+  + Q
Sbjct:  246 VTNRICPESVGGGIPDVKTVLSGLISTPVLSIRLIWAKMLGLIFALIAGLSVGKEGPFVHVAVAISDSLMRLHCFRHCRRNTSKRLEILGCASAAGVASTFGTPFGGVLFSIEVTATYYMVRNLPRAFFCAICAALVYEIAGLRDTFALFTDDHDRVQ 403

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BLAST of mRNA_Ecto-sp9_F_contig10070.112.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SQY8_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.970e-38
Identity = 69/131 (52.67%), Postives = 99/131 (75.57%), Query Frame = 0

Query:    2 SLSLTLGMCAITHFVCPCASGGGVPEMKAVLSGSSRPGLLSAQLVLVKMAGVITANAAGLSVGKEGPLIHITCAMADILMSTPWFKKVRLNNKQRLGILACACAAGVAATFGSVFGGTLFSVEVTATAYMV 132
            ++ L+L  C +T  +C  A GGG+PE++A+LSG+ +P LLS +L++ K  G+I A  AGLSVGKEGP IH++ A+AD +M  P+FK +R  + +RL +LACAC +GVAATFG+ FGG LFS+E+T++AY V
Sbjct:  112 AIILSLLGCFLTQMICSDAVGGGIPEIQAILSGTVKPVLLSKKLIIAKGLGLICALCAGLSVGKEGPFIHMSVALADQIMRLPFFKNIRRQDSKRLELLACACGSGVAATFGTPFGGVLFSIELTSSAYNV 242

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BLAST of mRNA_Ecto-sp9_F_contig10070.112.1 vs.
Match: Chloride (channel protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UTU7_9STRA)

HSP 1 Score: 148 bits (373), Expect = 3.370e-38
Identity = 81/150 (54.00%), Postives = 107/150 (71.33%), Query Frame = 0

Query:   12 ITHFVCPCASGGGVPEMKAVLSGSSRPGLLSAQLVLVKMAGVITANAAGLSVGKEGPLIHITCAMADILMSTPWFKKVRLNNKQRLGILACACAAGVAATFGSVFGGTLFSVEVTATAYMVDTLPATFLCAVV--VAVVFWVS-GQGELF 158
            + HFVCP A+G G+P+MK  LSG      LS   +LVKMAG+++A AAGLS+GKEGP I ++C  ADILM   +F+++  ++ +RL +L+CACAAGVAATFG+ FGG LFSVEVTA+ YMV  LP +F  A+   V + F V+ GQ  LF
Sbjct:  180 LVHFVCPQAAGSGLPQMKVALSGVDMREFLSPTCLLVKMAGLVSAYAAGLSIGKEGPFIMMSCCFADILMQMGYFRRIYEDSSKRLEMLSCACAAGVAATFGTPFGGVLFSVEVTASFYMVRNLPRSFFAALAGAVTIAFLVTNGQYGLF 329

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BLAST of mRNA_Ecto-sp9_F_contig10070.112.1 vs.
Match: Chloride (channel protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8X4_9STRA)

HSP 1 Score: 147 bits (372), Expect = 4.600e-38
Identity = 81/150 (54.00%), Postives = 107/150 (71.33%), Query Frame = 0

Query:   12 ITHFVCPCASGGGVPEMKAVLSGSSRPGLLSAQLVLVKMAGVITANAAGLSVGKEGPLIHITCAMADILMSTPWFKKVRLNNKQRLGILACACAAGVAATFGSVFGGTLFSVEVTATAYMVDTLPATFLCAVV--VAVVFWVS-GQGELF 158
            + HFVCP A+G G+P+MK  LSG      LS   ++VKMAG++TA AAGLS+GKEGP I ++C  ADILM   +F++V  ++ +RL +L+CACAAGVAATFG+ FGG LFSVEVT++ YMV  LP +F  A+   V + F V+ GQ  LF
Sbjct:  180 LVHFVCPQAAGSGLPQMKVALSGVDMREYLSPTCLMVKMAGLVTAYAAGLSIGKEGPFIMMSCCFADILMQMGYFRRVYEDSSKRLEMLSCACAAGVAATFGTPFGGVLFSVEVTSSFYMVRNLPRSFFAALAGAVTIAFLVTDGQYGLF 329

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BLAST of mRNA_Ecto-sp9_F_contig10070.112.1 vs.
Match: Aste57867_178 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K740_9STRA)

HSP 1 Score: 144 bits (363), Expect = 7.750e-37
Identity = 72/136 (52.94%), Postives = 100/136 (73.53%), Query Frame = 0

Query:   12 ITHFVCPCASGGGVPEMKAVLSGSSRPGLLSAQLVLVKMAGVITANAAGLSVGKEGPLIHITCAMADILMSTPWFKKVRLNNKQRLGILACACAAGVAATFGSVFGGTLFSVEVTATAYMVDTLPATFLCAVVVAV 147
            + HFVCP A+G G+P+MK  +SG      LS+  ++VKMAG++T  AAGLS+GKEGP I ++C  ++ILM   +F+++  ++ +RL +LACACAAGVAATFG+ FGG LFSVEVT++ YMV  LP +F  A+  AV
Sbjct:  180 LVHFVCPQAAGSGLPQMKVAISGVDMRDYLSSTCLVVKMAGLVTGYAAGLSIGKEGPFIMMSCCFSEILMQLKYFRRIYEDSSKRLEMLACACAAGVAATFGTPFGGVLFSVEVTSSFYMVRNLPRSFFAALAGAV 315

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BLAST of mRNA_Ecto-sp9_F_contig10070.112.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W8I1_GLOUD)

HSP 1 Score: 142 bits (357), Expect = 5.360e-36
Identity = 72/133 (54.14%), Postives = 93/133 (69.92%), Query Frame = 0

Query:   12 ITHFVCPCASGGGVPEMKAVLSGSSRPGLLSAQLVLVKMAGVITANAAGLSVGKEGPLIHITCAMADILMSTPWFKKVRLNNKQRLGILACACAAGVAATFGSVFGGTLFSVEVTATAYMVDTLPATFLCAVV 144
            + HFVCP A+G G+P MK  +SG      LS + V+ K+ G++   AAGLS+GKEGP I I+C  A ILM+ P F+++  +  +RL +LACACAAGVAATFGS FGG LF VEVT+  YMV TLP +F  A+V
Sbjct:  129 LVHFVCPQAAGSGLPFMKVAISGIDMSAYLSLRCVVTKIVGLLAGFAAGLSIGKEGPFIMISCGFASILMNLPLFQRINNDETKRLEMLACACAAGVAATFGSPFGGVLFGVEVTSHFYMVRTLPRSFFAAIV 261

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig10070.112.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig10070.112.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Chloride	1.250e-107	90.32	channel protein n=1 Tax=Ectocarpus siliculosus Tax...	[more]
Chloride	6.930e-51	56.10	channel n=1 Tax=Tribonema minus TaxID=303371 RepID...	[more]
Uncharacterized	1.720e-49	97.87	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Hypothetical	3.760e-41	50.32	protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=...	[more]
Chloride	2.480e-39	50.00	channel protein n=2 Tax=Monodopsidaceae TaxID=4250...	[more]
Hypothetical	1.970e-38	52.67	protein (Fragment) n=1 Tax=Chromulina nebulosa Tax...	[more]
Chloride	3.370e-38	54.00	channel protein n=3 Tax=Aphanomyces invadans TaxID...	[more]
Chloride	4.600e-38	54.00	channel protein n=7 Tax=Aphanomyces astaci TaxID=1...	[more]
Aste57867_178	7.750e-37	52.94	protein n=1 Tax=Aphanomyces stellatus TaxID=120398...	[more]
Uncharacterized	5.360e-36	54.14	protein n=1 Tax=Globisporangium ultimum (strain AT...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001807	Chloride channel, voltage gated	PRINTS	PR00762	CLCHANNEL	coord: 49..68 score: 49.6 coord: 105..124 score: 56.7 coord: 18..35 score: 51.67
IPR001807	Chloride channel, voltage gated	PFAM	PF00654	Voltage_CLC	coord: 9..155 e-value: 5.3E-31 score: 108.1
IPR014743	Chloride channel, core	GENE3D	1.10.3080.10		coord: 1..168 e-value: 5.2E-43 score: 149.5
IPR014743	Chloride channel, core	SUPERFAMILY	81340	Clc chloride channel	coord: 5..152
None	No IPR available	PANTHER	PTHR45720:SF10	CHLORIDE CHANNEL PROTEIN 2	coord: 9..153
None	No IPR available	PANTHER	PTHR45720	FAMILY NOT NAMED	coord: 9..153
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 87..97
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 127..151
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 14..22
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..13
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 122..126
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 98..121
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 69..86
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..22
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 23..68
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 152..169
None	No IPR available	TMHMM	TMhelix		coord: 97..119
None	No IPR available	TMHMM	TMhelix		coord: 129..151

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig10070	contig	Ecto-sp9_F_contig10070:742..4049 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig10070.112.1	mRNA_Ecto-sp9_F_contig10070.112.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig10070 742..4077 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig10070.112.1 ID=prot_Ecto-sp9_F_contig10070.112.1|Name=mRNA_Ecto-sp9_F_contig10070.112.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=170bp
MSLSLTLGMCAITHFVCPCASGGGVPEMKAVLSGSSRPGLLSAQLVLVKM
AGVITANAAGLSVGKEGPLIHITCAMADILMSTPWFKKVRLNNKQRLGIL
ACACAAGVAATFGSVFGGTLFSVEVTATAYMVDTLPATFLCAVVVAVVFW
VSGQGELFALISDNTAQAQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001807	Cl-channel_volt-gated
IPR014743	Cl-channel_core