prot_Ecto-sp9_F_contig1006.97.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig1006.97.1
Unique Nameprot_Ecto-sp9_F_contig1006.97.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length903
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1006.97.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIA5_ECTSI)

HSP 1 Score: 916 bits (2368), Expect = 0.000e+0
Identity = 591/603 (98.01%), Postives = 592/603 (98.18%), Query Frame = 0 
Query:  151 MRVVCKQGTGWRQALPLYEGFLELALERARATTSPLEETQAGRADVVPVPLLGQRQQLHRLKEVAPGWEDVCQAALEACNIGGQWEAALKVLSVLRAGGGGAELSEAAYTEAIEVCGNGRAWDMVLLLVAEMSSDEIPMTAATFETALKAIHVFLQGCAATGAWSWALSLLRCMSTSTNGPNGIPLNAAHYLDALRSCAGVVDKPGGPKAQAAAKAALGLLQDVRENGWLVGQQGEDLVYCAMKTQAAGRDAWGALALLDQDDGLPRSVMLRTGAMQACSGAGEWRAALSILEDMQAEGLRPNGAAYVAAMEACARGGVMDLALELLDRVLMFHPRDERTVTAAXXXXXXXXXXXXXXXXXXXXXQRMRQDSLAVVTSREYNAAIMACCRAQQSVAALTLLGDMSVESEHCSADETSYVLVMRAFGREGRWWTVIDLMGSLKEEAGLVPTVSSXXXXXXXXXXXXXXXXXXXXXXXXXQERVRPTEFTXXXXXXXXXXXXXXXXXXXXXXXXKEQEDLVPDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSATSGPNLVLYNIAIGSCARARDWPRMLEEMDRMRREDIEPEESTFAAPLDT 753
            MRVVCKQGTGWRQALPLYEGFLELALE+ARATTSPLEETQAGRADVVPVPLL QRQQLHRLKEVAPGWEDVCQAALEACNIGGQWEAALKVLSVLRAGGGGAELSEAAYTEAIEVCG GRAWDMVLLLVAEMSSDEIPMTAATFETALK       GCAATGAWSWALSLLRCMSTSTNGPNGIPLNAAHYLDALRSCAGVVDKPGGPKAQAAAKAALGLLQDVRENGWLVGQQGEDLVYCAMKTQAA RDAWGALALLDQDDGLPRSVMLRTGAMQACSGAGEWRAALSILEDMQAEGLRPNGAAYVAAMEACARGGVMDLALELLDRVLMFHPRDERTVTAAXXXXXXXXXXXXXXXXXXXXXQRMRQDSLAVVTSREYNAAIMACCRAQQSVAALTLLGDMSVESEHCSADETSYVLVMRAFGREGRW TVIDLMGSLKEEAGLVPTVSSXXXXXXXXXXXXXXXXXXXXXXXXXQERVRPTEFTXXXXXXXXXXXXXXXXXXXXXXXXKEQEDLVPDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSATSGPNLVLYNIAIGSCARARDWPRMLEEMDRMRREDIEPEESTFAAPLDT
Sbjct:    1 MRVVCKQGTGWRQALPLYEGFLELALEQARATTSPLEETQAGRADVVPVPLLRQRQQLHRLKEVAPGWEDVCQAALEACNIGGQWEAALKVLSVLRAGGGGAELSEAAYTEAIEVCGKGRAWDMVLLLVAEMSSDEIPMTAATFETALK-------GCAATGAWSWALSLLRCMSTSTNGPNGIPLNAAHYLDALRSCAGVVDKPGGPKAQAAAKAALGLLQDVRENGWLVGQQGEDLVYCAMKTQAAARDAWGALALLDQDDGLPRSVMLRTGAMQACSGAGEWRAALSILEDMQAEGLRPNGAAYVAAMEACARGGVMDLALELLDRVLMFHPRDERTVTAAXXXXXXXXXXXXXXXXXXXXXQRMRQDSLAVVTSREYNAAIMACCRAQQSVAALTLLGDMSVESEHCSADETSYVLVMRAFGREGRWRTVIDLMGSLKEEAGLVPTVSSXXXXXXXXXXXXXXXXXXXXXXXXXQERVRPTEFTXXXXXXXXXXXXXXXXXXXXXXXXKEQEDLVPDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSATSGPNLVLYNIAIGSCARARDWPRMLEEMDRMRREDIEPEESTFAAPLDT 596
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1006.97.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJW5_HETAK)

HSP 1 Score: 57.8 bits (138), Expect = 6.820e-5
Identity = 67/271 (24.72%), Postives = 111/271 (40.96%), Query Frame = 0 
Query:  225 ALEACNIGGQWEAALKVLSVLRAGGGGAELSEAAYTEAIEVCGNGRAWDMVLLLVAEMSSDEIPMTAATFETALKAIHVFLQGCAATGAWSWALSLLRCMSTSTNG--PNGIPLNAA---------------HYLDALRSCAGVVDKPGGPKAQAAAKAALGLLQDVRENGWLVGQQGEDLVYCAMKTQAAGRDAWGALALLDQDDGLPRSVMLRTGAMQACSGAGEWRAALSILEDMQA-EGLRPNGAAYVAAMEACARGGVMDLALELL 477
            A++AC     W  AL++LS L++ G   +L+   Y  AI +  + R W + L LV EM +  +P T      A+         CA+  A  +  +     +    G  PNG+ L A                ++ + L SC+ +   P       A ++ + L +          Q+G  L   A++                   G+     + T A+ +C  AG W AAL +L+  +A  G+RP+  AY  A++A  + G  D A+ LL
Sbjct:   90 AIKACGPSHDWVRALQILSTLKSTG--MKLTAETYQHAIGIVCSARQWQLALNLVDEMEARRLPPTERVLNQAI---------CASDHAGDFESAKRYEAALRRQGITPNGVALGALVSASYKAKKPEETLQYFEERLASCSEI---PSATLWTLAIRSHVQLKKP---------QEGLALFLDALRR------------------GVSADQRMLTAAIGSCKDAGNWEAALGLLQRFEALGGVRPDQVAYSTALQALQKAGQADRAVALL 319
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1006.97.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized0.000e+098.01protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIA5... [more]
Hypothetical6.820e-524.72protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 206..351
e-value: 1.8E-10
score: 42.4
coord: 819..899
e-value: 1.8E-11
score: 45.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 484..594
e-value: 3.0E-15
score: 58.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 595..702
e-value: 1.9E-27
score: 98.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 389..483
e-value: 7.0E-7
score: 30.9
coord: 703..810
e-value: 1.5E-17
score: 65.7
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 733..786
e-value: 2.4E-8
score: 33.9
coord: 440..480
e-value: 0.0016
score: 18.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 746..778
e-value: 1.8E-4
score: 19.4
coord: 780..814
e-value: 9.9E-4
score: 17.1
coord: 673..701
e-value: 0.0016
score: 16.5
coord: 854..883
e-value: 7.7E-4
score: 17.5
coord: 426..453
e-value: 6.7E-4
score: 17.7
coord: 603..635
e-value: 1.1E-7
score: 29.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 599..645
e-value: 3.3E-10
score: 40.0
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 499..521
e-value: 0.027
score: 14.7
coord: 856..880
e-value: 0.29
score: 11.5
coord: 531..555
e-value: 1.1
score: 9.6
coord: 674..701
e-value: 0.0018
score: 18.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 108..142
score: 6.051
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 491..525
score: 7.947
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 600..634
score: 11.992
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 527..557
score: 6.193
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 297..331
score: 5.415
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 453..483
score: 6.434
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 418..452
score: 8.692
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 813..847
score: 7.355
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 255..289
score: 6.171
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 671..705
score: 9.35
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 778..812
score: 9.229
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 708..742
score: 9.854
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 564..599
score: 8.046
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 635..665
score: 7.399
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 848..882
score: 9.613
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 743..777
score: 10.446
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 414..581
coord: 236..481
coord: 590..700
coord: 761..893
coord: 648..777
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..902
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.454

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1006contigEcto-sp9_F_contig1006:582..5962 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1006.97.1mRNA_Ecto-sp9_F_contig1006.97.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig1006 5..6046 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig1006.97.1 ID=prot_Ecto-sp9_F_contig1006.97.1|Name=mRNA_Ecto-sp9_F_contig1006.97.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=903bp
MVLRLRAACLASLAFIDQPALGFIALKNPPHHSIGVRPRRCPAHGATARY
QSRLDLGQPSVELALLGLNITRGISASKSRRGEDFVAGGPEQAIFRLHER
RIRGLENTKSEYVTAHLACARSGDTGRALFLLRHAAKRGVPLLAVDVANA
MRVVCKQGTGWRQALPLYEGFLELALERARATTSPLEETQAGRADVVPVP
LLGQRQQLHRLKEVAPGWEDVCQAALEACNIGGQWEAALKVLSVLRAGGG
GAELSEAAYTEAIEVCGNGRAWDMVLLLVAEMSSDEIPMTAATFETALKA
IHVFLQGCAATGAWSWALSLLRCMSTSTNGPNGIPLNAAHYLDALRSCAG
VVDKPGGPKAQAAAKAALGLLQDVRENGWLVGQQGEDLVYCAMKTQAAGR
DAWGALALLDQDDGLPRSVMLRTGAMQACSGAGEWRAALSILEDMQAEGL
RPNGAAYVAAMEACARGGVMDLALELLDRVLMFHPRDERTVTAAFHGAIK
ACGNGGQWEEATSLLQRMRQDSLAVVTSREYNAAIMACCRAQQSVAALTL
LGDMSVESEHCSADETSYVLVMRAFGREGRWWTVIDLMGSLKEEAGLVPT
VSSYNVVIEALAKAGEWMKALEMLAEMKQERVRPTEFTYSRCMAACEKSG
EWERTLLLLADMKEQEDLVPDSYIFSTAMMACSKAGRLDDVLGILQEMRE
MSATSGPNLVLYNIAIGSCARARDWPRMLEEMDRMRREDIEPEESTFAAP
LDTCGRTGNLPMALELLDRMREDGIKPGVVTYGYVVAAACRAGERTSAAL
LLDEMEAAGHPPNERTYGVAALACREGNNADAAMDLLRRRQMQGLPPDAL
ILSCAVQACSNAGNMQRGLELITEMKSAGFSPDRAFYHSVIAGINASLAS
RL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat