mRNA_Ecto-sp9_F_contig9994.18057.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9994.18057.1
Unique NamemRNA_Ecto-sp9_F_contig9994.18057.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9994.18057.1 vs.
Match: WS_DGAT_C (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1D2_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 6.640e-55
Identity = 87/93 (93.55%), Postives = 88/93 (94.62%), Query Frame = 1 
Query:    1 MTLIGGCIRRYSLANGDAAGNSIGGPGFRSRALIPVALPRPSSPSGAILCNKWTVSNVPGPQEPVRLAGVGMKRIHFAFSNIMPQVCCFSITG 279
            MTLIGGCIRRYSLANGDAAGNSIGGPGFRSRALIPVALPRPSS SGAILCNKWTVSNVPGPQEPVRLAGVGMKRIHFAFSNIMPQV   S+ G
Sbjct:    1 MTLIGGCIRRYSLANGDAAGNSIGGPGFRSRALIPVALPRPSSTSGAILCNKWTVSNVPGPQEPVRLAGVGMKRIHFAFSNIMPQVGAVSLDG 93
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BLAST of mRNA_Ecto-sp9_F_contig9994.18057.1 vs.
Match: WS_DGAT_C (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW4_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 3.620e-37
Identity = 86/160 (53.75%), Postives = 88/160 (55.00%), Query Frame = 1 
Query:    1 MTLIGGCIRRYSLANGDAAGNSIGGPGFRSRALIPVALPRPSSP-SGAILCNKW------------------------------------------------------------------TVSNVPGPQEPVRLAGVGMKRIHFAFSNIMPQVCCFSITG 279
            MTLIGGCIRRYSLANGDAAGNSIGGPGFRSRALIPVALPR SSP SGAILCNKW                                                                  TVSNVPGPQEPVRLAGVG+KRIHFAFSNIMPQV   S+ G
Sbjct:  320 MTLIGGCIRRYSLANGDAAGNSIGGPGFRSRALIPVALPRSSSPPSGAILCNKWAFVSMNLSMDEADAATRLQELKATTTAIKTSPTPGLQYLMQTHIMPHLPLWLCREMVHGALATHTVTVSNVPGPQEPVRLAGVGIKRIHFAFSNIMPQVGVVSLDG 479
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9994.18057.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
WS_DGAT_C6.640e-5593.55domain-containing protein n=1 Tax=Ectocarpus silic... [more]
WS_DGAT_C3.620e-3753.75domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9994contigEcto-sp9_F_contig9994:67..3872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_005610.1
Exons3
Model size279
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9994.18057.1prot_Ecto-sp9_F_contig9994.18057.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9994 67..3872 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931096.6607418-CDS-Ecto-sp9_F_contig9994:66..1861622931096.6607418-CDS-Ecto-sp9_F_contig9994:66..186Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9994 67..186 -
1692279031.4070578-CDS-Ecto-sp9_F_contig9994:66..1861692279031.4070578-CDS-Ecto-sp9_F_contig9994:66..186Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9994 67..186 -
1622931096.6745656-CDS-Ecto-sp9_F_contig9994:2806..28911622931096.6745656-CDS-Ecto-sp9_F_contig9994:2806..2891Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9994 2807..2891 -
1692279031.4163609-CDS-Ecto-sp9_F_contig9994:2806..28911692279031.4163609-CDS-Ecto-sp9_F_contig9994:2806..2891Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9994 2807..2891 -
1622931096.6875648-CDS-Ecto-sp9_F_contig9994:3798..38721622931096.6875648-CDS-Ecto-sp9_F_contig9994:3798..3872Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9994 3799..3872 -
1692279031.4251294-CDS-Ecto-sp9_F_contig9994:3798..38721692279031.4251294-CDS-Ecto-sp9_F_contig9994:3798..3872Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9994 3799..3872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9994.18057.1

>prot_Ecto-sp9_F_contig9994.18057.1 ID=prot_Ecto-sp9_F_contig9994.18057.1|Name=mRNA_Ecto-sp9_F_contig9994.18057.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=93bp
MTLIGGCIRRYSLANGDAAGNSIGGPGFRSRALIPVALPRPSSPSGAILC
NKWTVSNVPGPQEPVRLAGVGMKRIHFAFSNIMPQVCCFSITG
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mRNA from alignment at Ecto-sp9_F_contig9994:67..3872-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9994.18057.1 ID=mRNA_Ecto-sp9_F_contig9994.18057.1|Name=mRNA_Ecto-sp9_F_contig9994.18057.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3806bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9994:67..3872- (Ectocarpus species9 EcSCA_722f female)
ATGACCCTTATCGGGGGGTGCATCCGGCGCTATTCCCTGGCCAATGGGGA
TGCTGCAGGCAACTCCATTGGCGGGTGAGACGCACCGTTATACACACAGG
GTCTGTCTCATGCATACCCCGAAACCACAAATTTAAGAAATGATGCAGTG
TAGTTGTTTATTGAACACACCTACTACCCACCCACCCTTTGGTTTTCGGT
CACTGTAAACGAGTACCACGTTCGATATCTAGACTGGACGCTCTTGTTTG
GGCGAGAACACAAAGAACCGTAGGAGGGGAGAAGGCTTGCCTTCGTGTGC
ATTGCCATCTACGGAAAATTTCTTTGGTCCGAGATGGAGCTTCTTTCCAG
TGGAAATGCTGTCCGAGGCGCTCCGACAGTTTTTGGATGAGAAACGAATT
GTTTCGCCGACACAGCAAAAATTATTGTGCATTGCTGCACGGCGGTAATT
GACCTCTTTTGAGACCTCGACTAACAAATTTGCTGCCCCTGAACAGCTTT
AGCCTTAGCCTTAGCAACTATTCTACAAGTATGGTACCGCTCGGTGTAAC
AATAAAGGTAGAATACCGCTCGGACAATTGTGAGCATACCAATGGTGTCT
ATGTTTCCGAGCCGATTAAGTATGCCATGCACTTGCGATCCCCTGCCCCC
CCCACGAGAACAATGGGAGGTCCCCCTGTTCGTCTAGATGGATGGTCTTC
GTTAAATTTCATTTTGCTTTCCTTCGTTGCGCCTAGTTCCCCCCCCCGGG
ACCTGCCAAGCTTGCCTTCTTTTGACACGAGGACCGATGTAAAATATGAT
GTCTTGTACCAGCTTCTGCTTGTGCCGTTTGCTGGCCAAGGACCGCCTAA
CTTTCCTTCTTCGAGACGGGGACAGAAAAAACGTACAGCAGCAGTTCCCG
CTTGTGCCGTCCACTGCCGCACTGAATTACATTGCCTTGTCGCGTCCCAT
TGCCTTGCCGTCACTTCCGCGGGAAGCGCAGGCCGGGGTTTCGGTCGAGA
GCGCTGATTCCGGTAGCCCTGCCTAGGCCCTCTTCCCCTTCGGGAGCCAT
CCTCTGCAACAAATGGGTGAGGTTGATTGTTTTGGTAGCTGGATTGCTCC
AACGTAACCAAGAGACTGGCCAAATGCCATTGCCGAAGTGGGTGACTTTT
GTTAGTAAGGATTTCGTCAATCGATAGAGAGAGAGAGAGAGAGAGAGACA
GACAGAGAGAGACAGAGAGAGAGAGCTTTCCTTGCGACTGTCCGTGCGGG
TTCGATATCACCCTCGTACAATATGATTGTGGAGCGATCTATCTTTTTCA
ATCGATCGATCGCACACTTCACCTGCTGCTACCTTCGTCCGGGCACGTTT
GCGGCAGCAATGATTGTGTCGGTCGCGATCAGCGCGACCAACCGATGAGT
GAGGCTGCGACCTCAACTTTATTCCCCCGTCTTCGGTCGCAGTGCCACCC
GAGAGGGAAACCGCAGCCTCCATCAACTACGCTCACAGTCGAACTATGTA
CAACAAACGGGTGATGCTATACAGTAGCCTCTGCGAATTGCCCTTGCAGG
CGTGGTGCAAGAAGTGGGTGAGGTTGCAGTCGACGTGGGCCTGCGAGTAT
GAGATCACTGCACATCACATCACACTACTGCTGAACTCCATCGGGGGCGG
CGCGTTTTGGTTCGGGCAGCGCGTTTCTCTTTTTCGGTGGTTCTACGAAC
CCTCAGTTGCCGCAAAGAATCCTCCTATGCGTGCAGCCACGGCGCCCCCT
CTCAACCCCTTCACAACAACCGCCCCCTTTGCAGAGAAAGATGGTTGCAA
TGCCAACATCGCCGATCCGACACTGTACTGCACCCTTAGCAACCGCAGCT
AGCACTCTTCTAACCCCCCCCCCCCCCCCAACCTCCCGCCCTCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCGCCCGCTGGTTGCCGGTACACCCCCGGTN
NNNNNNNNNCTACCCCCCCCCCCCGCCCTTGCTTCGGACCCCGCCCCCCC
CCCCCTCCCCCCCTTGGCAGGCGTTTGTGTCGATGAACCTGTCGATGGAC
GAGGCAGACGCCGCGACTCGCCTGCAAGAGCTCAAGGCCACCACGACGGC
GATCAAGACCAGCCCGACGCCAGGCCTTCAGTACCTCATGCAAACCCACG
TCATGCCGCACCTGCCTCTGTGGGTGTGCAGGGAGATGGTGCACGGCGCT
CTGGCGACACACACCGTGGTGAGTGAAGGGTACGAAAGGCAGGCAAGCAG
GCGGCCGAGGCGGGCCTTGGGGGTGGAGAGCGTGCCCCGTGTATACATGA
AGACAGACAGACAGACAGACCACACGGCGGGAAAGATGGGGGGCACCGGG
GCGGGTGGGGTGTGGTCGGCTTGCGGCGATCCATGGCGGTCGTCGCGGAA
TTGGTTGGCCTCGCTCGGCCCTTGTGCGAGACGAGACGCCGAAAGCGTTC
CGGATCCCGGGAGTGACACGGCGATCGTGATCGTGTACTAGACCGTATTG
TCGTTGTTTGTGAAAGGTCGACCGATTGACTGCACTTTGAACCCCTCTCT
TGTCCGTTTTGTTTATGTTGTCCAACAATTAGTGCTTGGCCCATTTTAAA
TGGTTGCTTGATTGCTAGTTTATTCCCTCTTGGTCGACATTTTTGTTGCT
CCCCATAAGCGATCGCTTGTAATACTCAACCAGTCTCTCTTGACCACCTA
TTTTAGCTCTAAATTCTCCCCTACTGCTGAACGACAGCTATCGTTTACTC
TATGGCCGTTCGGGCGTGAAACGAACTTGTCCACCGTACAACCCTTTCTC
TCTCTTGTTGGTTCGGGAACAAGGCGGGGAGGGGACTCATTTTGGGTACG
AAAATTCAAGTACTACCCCCTTCCCTTGTGCTTTTCACTCTTGCCCGACG
AATGCCCTCCCCCCTTTTCTTTTTTTTTTCACAAACTTTTCGCGTTGCTG
CGCAAATGATAAATTGCATGTGCCCCAATGATAAATGGCATGAGCCTACA
TGATAGGCATGTTTCTGCTAAATGATAAATGGCATGTGCCTGAATGATTG
GTGGCATGAACGAAAATGATGGATGCCATGTGCCTAAATGATAAATCGCA
TATGAGCGTGTCTTTCTGACCCTCTGGGCGACGATGGGGAGCTATAACAC
TGTGACGACTTCCTCTTACATTACACTACACGGAGGTGAACCATCCATTG
TTGTAGTGTTGGATGCCGCCCCTTTTCCCCTGTCTCTCTTCGCTCCCCTT
CGACGAAGAGATTTTGCGTTCGTCCGGTTTGTCTTTTGGTATACCGTACG
GTGGAAGGGAGCGTTGAAGCCACCGCTAAGCACGACATGTTTGATTGACG
CGAGCTGTTTCCGACGAAAATCTCACAACCCCATCCAGTGCTTTTCATTT
TTGTTCAAGCTCCCCGACAGGTCGTACAATACAATATGAAACGAAATGAA
ATGAAGCCTTGCAGATCTGATCGCTTTCACTCATGACACCTTTTCCCGCC
GTACCCTTACCCGCTGTACCCCGTTTCCAAGGGCTTTGTGATGCCCCCCC
CCCGTCCATCACTTCAAGCAGCGTTAATCGGTAGTCACCGTAACAGCAGT
TCCAACATGGCGGTTTCCGACACCACCCGCCCTTGTGTCGATGTTTGCTG
CTTGCTTGCGTCGTTTTGCCTGTTTTGTTTCTCCAGACGGTGTCCAACGT
CCCTGGTCCCCAGGAGCCCGTGAGACTCGCGGGAGTTGGTATGAAGAGGA
TCCATTTCGCGTTCTCGAACATCATGCCACAGGTGTGCTGTTTTTCAATC
ACGGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9994:67..3872-

>mRNA_Ecto-sp9_F_contig9994.18057.1 ID=mRNA_Ecto-sp9_F_contig9994.18057.1|Name=mRNA_Ecto-sp9_F_contig9994.18057.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9994:67..3872- (Ectocarpus species9 EcSCA_722f female)
ATGACCCTTATCGGGGGGTGCATCCGGCGCTATTCCCTGGCCAATGGGGA
TGCTGCAGGCAACTCCATTGGCGGATGACCCTTATCGGGGGGTGCATCCG
GCGCTATTCCCTGGCCAATGGGGATGCTGCAGGCAACTCCATTGGCGGGC
CGGGGTTTCGGTCGAGAGCGCTGATTCCGGTAGCCCTGCCTAGGCCCTCT
TCCCCTTCGGGAGCCATCCTCTGCAACAAATGGGCCGGGGTTTCGGTCGA
GAGCGCTGATTCCGGTAGCCCTGCCTAGGCCCTCTTCCCCTTCGGGAGCC
ATCCTCTGCAACAAATGGACGGTGTCCAACGTCCCTGGTCCCCAGGAGCC
CGTGAGACTCGCGGGAGTTGGTATGAAGAGGATCCATTTCGCGTTCTCGA
ACATCATGCCACAGGTGTGCTGTTTTTCAATCACGGGGACGGTGTCCAAC
GTCCCTGGTCCCCAGGAGCCCGTGAGACTCGCGGGAGTTGGTATGAAGAG
GATCCATTTCGCGTTCTCGAACATCATGCCACAGGTGTGCTGTTTTTCAA
TCACGGGG
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