mRNA_Ecto-sp9_F_contig9992.18056.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9992.18056.1 vs.
Match: Transmembrane (9 superfamily member n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY0_ECTSI) HSP 1 Score: 226 bits (576), Expect = 2.270e-69 Identity = 105/112 (93.75%), Postives = 106/112 (94.64%), Query Frame = 1
Query: 376 MVRRRSWEGGLLPAGGRAWRVGALCCLYGLLLLGRSVEANDINHKYHDGESVIVWVNTVGPWYNPQESYPYYRLPFCVPDLVEGTKQKRPSGLGELLAGNELRNSGMDVKFK 711
MVRRRSW GGLLP GGRAWR GALCCLYGLLLLGR VEANDINHKYHDGESVIVWVNTVGPW NPQESYPYYRLPFCVP LV+GTKQKRPSGLGELLAGNELRNSGMDVKFK
Sbjct: 1 MVRRRSWGGGLLPTGGRAWRAGALCCLYGLLLLGRFVEANDINHKYHDGESVIVWVNTVGPWNNPQESYPYYRLPFCVPGLVDGTKQKRPSGLGELLAGNELRNSGMDVKFK 112
BLAST of mRNA_Ecto-sp9_F_contig9992.18056.1 vs.
Match: Transmembrane (9 superfamily member n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN7_9PHAE) HSP 1 Score: 224 bits (571), Expect = 3.780e-66 Identity = 106/112 (94.64%), Postives = 107/112 (95.54%), Query Frame = 1
Query: 376 MVRRRSWEGGLLPAGGRAWRVGALCCLYGLLLLGRSVEANDINHKYHDGESVIVWVNTVGPWYNPQESYPYYRLPFCVPDLVEGTKQKRPSGLGELLAGNELRNSGMDVKFK 711
MVRRRS GGLLPAGG AWRVGAL C+YGLLLLGRSVEANDINHKYHDGESVIVWVNTVGPWYNPQESYPYY LPFCVPDLVEGTKQKRPSGLGELLAGNELRNSGMDVKFK
Sbjct: 1 MVRRRSSRGGLLPAGGGAWRVGALWCVYGLLLLGRSVEANDINHKYHDGESVIVWVNTVGPWYNPQESYPYYHLPFCVPDLVEGTKQKRPSGLGELLAGNELRNSGMDVKFK 112
BLAST of mRNA_Ecto-sp9_F_contig9992.18056.1 vs.
Match: Transmembrane (9 superfamily member (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1C0_9STRA) HSP 1 Score: 101 bits (252), Expect = 6.120e-23 Identity = 47/93 (50.54%), Postives = 65/93 (69.89%), Query Frame = 1
Query: 430 WRVGALCCLYGLLLLGRSVEANDINHKYHDGESVIVWVNTVGPWYNPQESYPYYRLPFCVPDLVEGTKQKRPSGLGELLAGNELRNSGMDVKF 708
W AL L + A++ NHKY G+ V +WVN +GP+YNPQE+Y YY+LPFC P+L GT++KR +G+GE+L G+ELR+SG D+KF
Sbjct: 29 WAKKALAAFIFAGTLPSIILASERNHKYEVGDPVNLWVNKIGPYYNPQETYAYYKLPFCKPELGLGTRKKR-AGIGEILEGHELRHSGYDIKF 120
BLAST of mRNA_Ecto-sp9_F_contig9992.18056.1 vs.
Match: Transmembrane (9 superfamily member n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQT7_9STRA) HSP 1 Score: 101 bits (252), Expect = 4.770e-21 Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 1
Query: 484 VEANDINHKYHDGESVIVWVNTVGPWYNPQESYPYYRLPFCVPDLVEGTKQKRPSGLGELLAGNELRNSGMDVKF 708
V A + NHKY GE + VWVN VGP++NPQE+YPYYRLPFC PD+ +K+KR G+GE+LAGN+LR+SG ++F
Sbjct: 19 VLAGENNHKYTPGERMTVWVNKVGPYFNPQETYPYYRLPFCRPDMGVESKRKR-QGMGEILAGNDLRDSGFSLQF 92
BLAST of mRNA_Ecto-sp9_F_contig9992.18056.1 vs.
Match: Transmembrane (9 superfamily member n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3XBE8_9CHLO) HSP 1 Score: 92.0 bits (227), Expect = 2.430e-20 Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 1
Query: 427 AWRVGALCCLYGLLLLGRSVEANDINHKYHDGESVIVWVNTVGPWYNPQESYPYYRLPFCVPDLVEGTKQKRP-SGLGELLAGNELRNSGMDVKFK 711
AW A ++G++ L VEA++ HKY DGE V ++VN VGP+ NPQE+Y YY LPFC P G K KR GLGE+L GNEL +S + ++FK
Sbjct: 3 AWLWRAFALVFGIVAL---VEADESTHKYADGEVVKLYVNKVGPYNNPQETYNYYELPFCKPPEALGHKPKRKWGGLGEVLQGNELIDSEIQIQFK 95
BLAST of mRNA_Ecto-sp9_F_contig9992.18056.1 vs.
Match: Transmembrane (9 superfamily member n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y3L6_9CHLO) HSP 1 Score: 92.4 bits (228), Expect = 7.360e-18 Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 1
Query: 442 ALCCLYGLLLLGRSVEANDINHKYHDGESVIVWVNTVGPWYNPQESYPYYRLPFCVPDLVEGTKQKRPSGLGELLAGNELRNSGMDVKFK 711
ALCC+ + + VEA++ +HKY DGE V +WVN VGP+ NPQE+Y YY LPFC P K K GLGE+L GNEL +S ++VKFK
Sbjct: 9 ALCCIACIGV----VEADEHSHKYKDGEPVRLWVNKVGPYDNPQETYNYYYLPFCAPKEAGKPKHKW-GGLGEVLQGNELIDSQLEVKFK 93
BLAST of mRNA_Ecto-sp9_F_contig9992.18056.1 vs.
Match: Transmembrane (9 superfamily member n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2ME78_RHIMU) HSP 1 Score: 85.5 bits (210), Expect = 7.510e-18 Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 463 LLLLGRSVEANDINHKYHDGESVIVWVNTVGPWYNPQESYPYYRLPFCVPDLVEGTKQKRPSGLGELLAGNELRNSGMDVKFK 711
LLLL + A++ +H+Y E V +WVN VGP+ NPQE+Y YY LPFC P G + GLGE+L GNEL S +D+KF+
Sbjct: 19 LLLLSDAALASESDHRYQQDEKVTLWVNKVGPYNNPQETYNYYSLPFCHPS---GNPAHKWGGLGEVLGGNELIESQIDIKFQ 98
BLAST of mRNA_Ecto-sp9_F_contig9992.18056.1 vs.
Match: Transmembrane (9 superfamily member n=6 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JKR6_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 7.680e-18 Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 1
Query: 388 RSWEG------GLLPAGGRAWRVGALCCLYGLLLLGRSVEANDINHKYHDGESVIVWVNTVGPWYNPQESYPYYRLPFCVPDLVEGTKQKRPSGLGELLAGNELRNSGMDVKFK 711
R W G G P R R L L GL +D++HKY E+V++WVN VGP++NPQE+YPY+ LPFC P TK++R + LGE+L G+ELRNSG+ + F+
Sbjct: 9 RRWAGRKIGGSGGFPLVARMLRSVLLVALLGL----PGAAGDDVSHKYESWENVVLWVNKVGPYHNPQETYPYFSLPFCKPSDGVKTKKRR-AHLGEVLDGHELRNSGISIDFQ 117
BLAST of mRNA_Ecto-sp9_F_contig9992.18056.1 vs.
Match: Transmembrane (9 superfamily member n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3XAT7_9CHLO) HSP 1 Score: 92.0 bits (227), Expect = 9.990e-18 Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 1
Query: 427 AWRVGALCCLYGLLLLGRSVEANDINHKYHDGESVIVWVNTVGPWYNPQESYPYYRLPFCVPDLVEGTKQKRP-SGLGELLAGNELRNSGMDVKFK 711
AW A ++G++ L VEA++ HKY DGE V ++VN VGP+ NPQE+Y YY LPFC P G K KR GLGE+L GNEL +S + ++FK
Sbjct: 3 AWLWRAFALVFGIVAL---VEADESTHKYADGEVVKLYVNKVGPYNNPQETYNYYELPFCKPPEALGHKPKRKWGGLGEVLQGNELIDSEIQIQFK 95
BLAST of mRNA_Ecto-sp9_F_contig9992.18056.1 vs.
Match: Transmembrane (9 superfamily member (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9USY3_DIALT) HSP 1 Score: 86.3 bits (212), Expect = 1.490e-17 Identity = 37/79 (46.84%), Postives = 55/79 (69.62%), Query Frame = 1
Query: 475 GRSVEANDINHKYHDGESVIVWVNTVGPWYNPQESYPYYRLPFCVPDLVEGTKQKRPSGLGELLAGNELRNSGMDVKFK 711
G V A++ +H+Y DGE + +W N +GP++NPQE+Y ++ LPFC D + + K GLGE+L GN+L NSG+D+ FK
Sbjct: 21 GAVVRADEASHQYADGEPIKLWANKIGPYHNPQETYNFFALPFCSDDDLANVEHKW-GGLGEVLEGNDLVNSGLDMSFK 98 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9992.18056.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9992.18056.1 >prot_Ecto-sp9_F_contig9992.18056.1 ID=prot_Ecto-sp9_F_contig9992.18056.1|Name=mRNA_Ecto-sp9_F_contig9992.18056.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=113bp MVRRRSWEGGLLPAGGRAWRVGALCCLYGLLLLGRSVEANDINHKYHDGEback to top mRNA from alignment at Ecto-sp9_F_contig9992:2033..4689+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9992.18056.1 ID=mRNA_Ecto-sp9_F_contig9992.18056.1|Name=mRNA_Ecto-sp9_F_contig9992.18056.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2657bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9992:2033..4689+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9992:2033..4689+ >mRNA_Ecto-sp9_F_contig9992.18056.1 ID=mRNA_Ecto-sp9_F_contig9992.18056.1|Name=mRNA_Ecto-sp9_F_contig9992.18056.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=678bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9992:2033..4689+ (Ectocarpus species9 EcSCA_722f female)back to top |