mRNA_Ecto-sp9_F_contig9992.18055.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9992.18055.1
Unique NamemRNA_Ecto-sp9_F_contig9992.18055.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9992.18055.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY1_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 7.330e-18
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:   22 KVHAMIRHGARGPYTKPRCWEGYAESWDCNVTEVI 126
            +VHAMIRHGARGPYTKPRCWEGYAE+WDCNVTEV+
Sbjct:   71 QVHAMIRHGARGPYTKPRCWEGYAENWDCNVTEVV 105
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BLAST of mRNA_Ecto-sp9_F_contig9992.18055.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW44_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 9.920e-17
Identity = 31/35 (88.57%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:   22 KVHAMIRHGARGPYTKPRCWEGYAESWDCNVTEVI 126
            +VHAMIRHGARGP+T+PRCWEGYAESWDCNVTEV+
Sbjct:   71 QVHAMIRHGARGPFTQPRCWEGYAESWDCNVTEVV 105
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BLAST of mRNA_Ecto-sp9_F_contig9992.18055.1 vs.
Match: Uncharacterized (protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1L0_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 4.250e-7
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:   22 KVHAMIRHGARGPYTKPRCWEGYAESWDCNVTE 120
            +V  M+RHGAR P++  +CW GYAESW CN+ +
Sbjct:  487 QVQMMVRHGARTPFSSGQCWNGYAESWTCNIRD 519
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9992.18055.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized7.330e-1891.43protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.920e-1788.57protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.250e-754.55protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9992contigEcto-sp9_F_contig9992:372..497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue5.5e-14
Seed eggNOG ortholog2880.D8LEY1
KEGG rclassRC00017
KEGG koko:K14395,ko:K19284,ko:K21403
KEGG ReactionR11527
EggNOG free text desc.acid phosphatase activity
EggNOG OGsKOG3720@1,KOG3720@2759
EC3.1.3.2
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931096.550011-CDS-Ecto-sp9_F_contig9992:371..4971622931096.550011-CDS-Ecto-sp9_F_contig9992:371..497Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9992 372..497 -
1692279031.3639922-CDS-Ecto-sp9_F_contig9992:371..4971692279031.3639922-CDS-Ecto-sp9_F_contig9992:371..497Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9992 372..497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9992.18055.1prot_Ecto-sp9_F_contig9992.18055.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9992 372..497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9992.18055.1

>prot_Ecto-sp9_F_contig9992.18055.1 ID=prot_Ecto-sp9_F_contig9992.18055.1|Name=mRNA_Ecto-sp9_F_contig9992.18055.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=42bp
AATYTERKVHAMIRHGARGPYTKPRCWEGYAESWDCNVTEVI
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mRNA from alignment at Ecto-sp9_F_contig9992:372..497-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9992.18055.1 ID=mRNA_Ecto-sp9_F_contig9992.18055.1|Name=mRNA_Ecto-sp9_F_contig9992.18055.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9992:372..497- (Ectocarpus species9 EcSCA_722f female)
GCTGCTACATACACCGAACGCAAGGTGCACGCGATGATCAGACACGGAGC
TCGCGGACCTTACACCAAACCGCGGTGCTGGGAAGGGTACGCCGAGAGCT
GGGACTGCAACGTCACTGAGGTGATC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9992:372..497-

>mRNA_Ecto-sp9_F_contig9992.18055.1 ID=mRNA_Ecto-sp9_F_contig9992.18055.1|Name=mRNA_Ecto-sp9_F_contig9992.18055.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9992:372..497- (Ectocarpus species9 EcSCA_722f female)
GCTGCTACATACACCGAACGCAAGGTGCACGCGATGATCAGACACGGAGC
TCGCGGACCTTACACCAAACCGCGGTGCTGGGAAGGGTACGCCGAGAGCT
GGGACTGCAACGTCACTGAGGTGATCGCTGCTACATACACCGAACGCAAG
GTGCACGCGATGATCAGACACGGAGCTCGCGGACCTTACACCAAACCGCG
GTGCTGGGAAGGGTACGCCGAGAGCTGGGACTGCAACGTCACTGAGGTGA
TC
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