mRNA_Ecto-sp9_F_contig999.18052.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig999.18052.1
Unique NamemRNA_Ecto-sp9_F_contig999.18052.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig999.18052.1 vs.
Match: ArfGAP (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY2_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 2.430e-23
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 3 
Query:  108 RTALHCAAATGKLGCCEFLIQNGADVLSLDERQCSPLDMACLGNRVFIGAAVEYFSDKMDR 290
            RTALHCAAATG LGCCEFLIQNGADVLSLDERQCSPLD+ACLGN+V    AVEYFSDKMDR
Sbjct:  704 RTALHCAAATGDLGCCEFLIQNGADVLSLDERQCSPLDIACLGNQV---PAVEYFSDKMDR 761
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BLAST of mRNA_Ecto-sp9_F_contig999.18052.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZP4_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 2.860e-22
Identity = 49/63 (77.78%), Postives = 53/63 (84.13%), Query Frame = 3 
Query:  102 TARTALHCAAATGKLGCCEFLIQNGADVLSLDERQCSPLDMACLGNRVFIGAAVEYFSDKMDR 290
            T RTALHCAAATG LGCCE +IQN ADV SLD RQCSPLD+ACLGN+V    AVE+FSDKMDR
Sbjct:   14 THRTALHCAAATGDLGCCESIIQNIADVFSLDGRQCSPLDIACLGNQV---PAVEHFSDKMDR 73
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BLAST of mRNA_Ecto-sp9_F_contig999.18052.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G725_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 7.410e-22
Identity = 48/61 (78.69%), Postives = 52/61 (85.25%), Query Frame = 3 
Query:  108 RTALHCAAATGKLGCCEFLIQNGADVLSLDERQCSPLDMACLGNRVFIGAAVEYFSDKMDR 290
            RTALH AAATG+LGCC+FLIQNGADV SLDERQCSPLD+ CLGN+V    AVEYF DKM R
Sbjct:   38 RTALHFAAATGELGCCDFLIQNGADVFSLDERQCSPLDIPCLGNQV---PAVEYFLDKMGR 95
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BLAST of mRNA_Ecto-sp9_F_contig999.18052.1 vs.
Match: TOP1Ac (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G724_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.010e-7
Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 2 
Query:    5 DLVYQRTLASAIAESEADLTTVSLGAGRVSLGDGED--SPALRRGNWET---GVLRV-----PYPER 175
            DLVY+RTLASA+AESEADLTTVSLGAG VSLGDGE+     L+     T   G L++     P+P R
Sbjct:  185 DLVYRRTLASAMAESEADLTTVSLGAGGVSLGDGEEVVDVVLKASGMTTLFEGFLKISRRPHPHPAR 251
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BLAST of mRNA_Ecto-sp9_F_contig999.18052.1 vs.
Match: TOP1Ac (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV2_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.140e-6
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 2 
Query:    5 DLVYQRTLASAIAESEADLTTVSLGAGRVSLGDGED 112
            DLVY+RTLASA+AESEAD TTVSLGAG VSLGDGE+
Sbjct:  248 DLVYRRTLASAMAESEADFTTVSLGAGGVSLGDGEE 283
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BLAST of mRNA_Ecto-sp9_F_contig999.18052.1 vs.
Match: DNA (topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.220e-6
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 2 
Query:    5 DLVYQRTLASAIAESEADLTTVSLGAGRVSLGDGED 112
            DLVY+RTLASA+AESEAD TTVSLGAG VSLGDGE+
Sbjct:  544 DLVYRRTLASAMAESEADFTTVSLGAGGVSLGDGEE 579
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig999.18052.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
ArfGAP2.430e-2388.52n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
Uncharacterized2.860e-2277.78protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.410e-2278.69protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
TOP1Ac1.010e-758.21domain-containing protein n=1 Tax=Ectocarpus silic... [more]
TOP1Ac1.140e-686.11domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
DNA1.220e-686.11topoisomerase (Fragment) n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig999contigEcto-sp9_F_contig999:3347..6917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-08_001210.1
Exons4
Model size833
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig999.18052.1prot_Ecto-sp9_F_contig999.18052.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig999 3347..6405 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931096.0966938-CDS-Ecto-sp9_F_contig999:3346..34551622931096.0966938-CDS-Ecto-sp9_F_contig999:3346..3455Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig999 3347..3455 +
1692279031.202938-CDS-Ecto-sp9_F_contig999:3346..34551692279031.202938-CDS-Ecto-sp9_F_contig999:3346..3455Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig999 3347..3455 +
1622931096.1184301-CDS-Ecto-sp9_F_contig999:4387..44261622931096.1184301-CDS-Ecto-sp9_F_contig999:4387..4426Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig999 4388..4426 +
1692279031.213068-CDS-Ecto-sp9_F_contig999:4387..44261692279031.213068-CDS-Ecto-sp9_F_contig999:4387..4426Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig999 4388..4426 +
1622931096.146746-CDS-Ecto-sp9_F_contig999:5394..54981622931096.146746-CDS-Ecto-sp9_F_contig999:5394..5498Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig999 5395..5498 +
1692279031.2228405-CDS-Ecto-sp9_F_contig999:5394..54981692279031.2228405-CDS-Ecto-sp9_F_contig999:5394..5498Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig999 5395..5498 +
1622931096.1974719-CDS-Ecto-sp9_F_contig999:6336..64051622931096.1974719-CDS-Ecto-sp9_F_contig999:6336..6405Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig999 6337..6405 +
1692279031.2323868-CDS-Ecto-sp9_F_contig999:6336..64051692279031.2323868-CDS-Ecto-sp9_F_contig999:6336..6405Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig999 6337..6405 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931096.23205-UTR-Ecto-sp9_F_contig999:6405..69171622931096.23205-UTR-Ecto-sp9_F_contig999:6405..6917Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig999 6406..6917 +
1692279031.2417374-UTR-Ecto-sp9_F_contig999:6405..69171692279031.2417374-UTR-Ecto-sp9_F_contig999:6405..6917Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig999 6406..6917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig999.18052.1

>prot_Ecto-sp9_F_contig999.18052.1 ID=prot_Ecto-sp9_F_contig999.18052.1|Name=mRNA_Ecto-sp9_F_contig999.18052.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=107bp
MRPGVPADAGQRHSGVGGGLDDGFAGSGTRFSRGRRGQPCTAPRQLGNWG
AASSLSRTALTCSRWTNGNVALWTWLAWAIGYLSVLRWSISQTRWIGRRT
RLGGTF*
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mRNA from alignment at Ecto-sp9_F_contig999:3347..6917+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig999.18052.1 ID=mRNA_Ecto-sp9_F_contig999.18052.1|Name=mRNA_Ecto-sp9_F_contig999.18052.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3571bp|location=Sequence derived from alignment at Ecto-sp9_F_contig999:3347..6917+ (Ectocarpus species9 EcSCA_722f female)
ATGCGACCTGGTGTACCAGCGGACGCTGGCCAGCGCCATAGCGGAGTCGG
AGGCGGACTTGACGACGGTTTCGCTGGGAGCGGGACGCGTTTCTCTCGGG
GACGGCGAGGTAGGCACATGTAGGGGGTGTACTCATGAAAAACGCATGTC
GTAGTCGCTAGAACTCTGCATCCCTTCAATGCCGGGACGAAGGAGTGATA
TGCCGGGTTTTCGCCGGTCCAGACGGGAGCTTTGGCCCACGGTGAGACAG
TCTGACAGACAGCAGTAGCGTTTAGGCCTATTTTGGCACCGTTAACACAG
AGACCAGATTGTAAAGACCGAAAATATATTGATTGTTTTTATTCCAGATT
TTATTTTTGTTGTTACGGGAGTGTTGCCTCTGTGACCTCTTTCGGCGCCC
CTAACACACCAGGTAAATTAGGAATGAAACAATTAGGTCATTGTTTCTTT
TCATATCTCTCTTTGTTGGCTGCGGGAGGTATCCCCGTATGGCCTCTTGG
TGGCACCTCTAACATACCAGATAAGGACTGAAAAATGTCAAGCCATTTTG
TCGACGGAGCCGTTGGGGTGCTGGCCCGCGATGACATAAGAGGAGACGCC
CCGTGGTGTGTGTATTCTATGTATTCTGCTTGCTGCCCCTAGGGTTTCGA
AAGTGGTGACTCATCTGTCTGTCGTTTGTGTGGTTGTATAATTCCAGTTA
TTGTTGCGGCAAACGTCTGCTTGCCGCCTGCAAGAGTTTCTAACGTGGTC
GCGTGCCTCTTTGATGTGTTTTTGGTTCTCCTTGTCATGATTTGTTTTGT
TTTTGCAGCAAAACGGTGCGGTTGTCCGGCACACAAGTCCTGAGTTTCTG
TTCTGTGTACTAGTTTGTGTGTGTGTTTGTTTTTCTAGTCGTTGGGATCG
ACCGGGCTACAACACCAGCTGACAATTGAAAAACTGTCAGTCTCAAGTGT
GTGTGTGAGCCGTGTGCTGCCTGCGCTCTTGTGCCGAACGTTCGTTGTTT
ATTGGGGGTCCACGATGGACGAACCCCGACGATCAGCACAGGACAGCCCT
GCACTGCGCCGCGGCAACTGGGAAACTGGGGTGAGAAAGAAGAGCCAGGG
AGACTTGAGAGTGCACTCCCCACATTTTATTTTACATTTATCTGATTTAT
AAATCGTGTGCCCTAGTTGGTCTGTGTGACCACGGAAGGCGTCCACGTCG
GTTGGACGAGAACGGATATTGGAAGGTTGAGCGGATACAGGGACCGGTTT
TGGAATGTGAGGCCAGCATCAACAACTCTGCCGCAGATTTCATGTTTGTC
CCCCTCCAAGCGTTCGTACGTCCGGCCCCACTTGCTGCATAACTGGTACC
GTGTATTGATGACGGTGCGGTGCGTCTTTCTAGCCTTGACGGCCTCCCAC
CCACCAAACCTGTCCACTGTTGTTGCGGTTAACCTGTCCACTGTTGTTGC
GGTTTACCTGTCCACTGTTGTTGTGGTTGTTGTGACTGCCGTTCTGTTGT
TGTGCTTTACCTGTGCTGTGCTGTCGTGGTTGTTGTGACTGCCGTTCTGT
TGCCTTGGTCCTCATTACTCGAAGTTGGCTAAATCATCATCGGTCGTAGT
CGCGAACGTGTCTTTTTTTGTTGTTGTTTACCCACGTGCTCTGCTCCGGC
GGTTGCTCCCTGCGTGAGCTGACTTTCTTCAACGACACGGCCTGCCAGCA
TGAATCTTGTCATTATATCCTCCCCGAGGTGCTGATCCTGTTCGGACGAT
TTGCAGACCTCACCCACCTGTGGTATACACACTTGTCACGTGTGGGTGAG
GTCTGCCATCAGCACCAACAGGATCACGATCTCGGGGAGGATTGAGACAA
GACTCATGCTGGGCAATCGGCTTATACCAGCAGGCCCTATCAGTAAAGAT
GATGCAGCATCCGCAGCAGAGAGAGCAATCGGAGCAACGTGGGTGAACGT
GGCGCGTGTTATGTTCCAGTAAGTTGAGATCTGTTTCACGACTGTGTCTT
GTCTTGTATGTTCCGTTTGTGTTCCTGTCTTGCTCGTTACATGCGTAGGT
GCTGCGAGTTCCTTATCCAGAACGGCGCTGACGTGCTCTCGCTGGACGAA
CGGCAATGTAGCCCTCTGGACATGGCTTGCCTGGGCAATCGGGTATTTAT
CGGTACAGTAGCTGAAGGGTTTTGGTATGAAGTAAACATGTTGGAGAAAG
CATGCAATCGGGGAAAGTTGGGTTGATTAGGGATAGGGTCTGCGTACCCC
CTCCCTTTTCTCAATCCTCATTAACTTAGTTTCTCGTGAATGCGGTCCTA
TTAATAGAACTAACGTAGAAGGTCCTCCCCCCTGGGTGTCTAGCCTCCCG
AGGGTGACGCAAGAGGACGTGCCGGAAAGGTTTGTTCGCGGGCTGTTGTA
CAACGTGGTGAATGCAGCGGCCATCCCTAGGAGCTAAGAACACCAGCCTC
GGCCAGAACTATTCACAGACCTTCTCAAGTGCGGCAGCCAACTGTGCGGG
GTGGGCCCGGTTTAGCGACATTTCCTGCATGGCTCTTGACAACAGATGGC
GTGGCACACGACTGCACCCTCCGACCAAAGTCCGCTGCACTGTACCCAGC
AATATCATAGCTCTTCGCTCGTGACACTATGATAGGGGTCGAAAAATCGA
GCCCAACCACTCGTCGCTACTGTATATAATAGGAGTATTGGAACTGTGGC
CCATCTAGTAAGGGATGGATGCAAAGTCAACGATGGAAGCTATGATATGA
GGCGAGCAACAACCAAGGGACATTGGATACCTGGTCCTGTGGGAAGGAAT
AATGCACTGTCCTCTCGACGACGCGTGGTCAACGGTCGAACAGCTAAGGC
ATGCAAAACATGAGCCCACCCCCTCCGTTAGATGGCTTGGCTTATGTTCT
TCTGTTCCGGACCTTAAACCTGTCCCACCTCTTCCCTGGATGCAACGTCG
CGCGTTGTTGGTCTCTCTGTGTGTTTGTTTTTCCCTCCAGGTGCTGCGGT
GGAGTATTTCTCAGACAAGATGGATCGGTAGGCGAACAAGACTTGGCGGG
ACATTTTAGGTTGAGTTTTTTCTGTGTACGGTTCGTTTCAGGTGGCGAGG
GGGTTGTGCCGCAAAGTGTGAACGGATTTCTGTTCCATCACGGATTTGCC
GATCGTTCGGATCCCGCCGTTAATTTGTACCCGGGGGTGAATGAACCCGC
GGCGCGGCACTCCCTCCGTGAGTCATTTCACGTTCATTCGGTATGCCGGG
ATTAACACGGCGGGAAAGCGGATTAGTTGAACGGAACGCGGATCAAGGAA
CGGTATCGTTGCTAGTTTGCACACGACGGTGCCATTCTTGGTAACGGCGT
GCTACTCACCGGCATGGGGTATAAATACTACTCCGGGAACACTTGCGCTG
TGGTGACTGTGAAAGAAATGTGTAGTTTTTTTTTAGATTTATCCTTTGAA
TCTAGAGGCCTTCCATAGCGCCAGAGTTTGGTCCTTGCACCGCAGCACAG
CAGGCGTTTGGCAATGTCGCCTTGCGACAGTGTTGACAGGAGTTTGGAGC
GGAATAAGAGCAGCAGCAGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig999:3347..6917+

>mRNA_Ecto-sp9_F_contig999.18052.1 ID=mRNA_Ecto-sp9_F_contig999.18052.1|Name=mRNA_Ecto-sp9_F_contig999.18052.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=642bp|location=Sequence derived from alignment at Ecto-sp9_F_contig999:3347..6917+ (Ectocarpus species9 EcSCA_722f female)
ATGCGACCTGGTGTACCAGCGGACGCTGGCCAGCGCCATAGCGGAGTCGG
AGGCGGACTTGACGACGGTTTCGCTGGGAGCGGGACGCGTTTCTCTCGGG
GACGGCGAGATGCGACCTGGTGTACCAGCGGACGCTGGCCAGCGCCATAG
CGGAGTCGGAGGCGGACTTGACGACGGTTTCGCTGGGAGCGGGACGCGTT
TCTCTCGGGGACGGCGAGGACAGCCCTGCACTGCGCCGCGGCAACTGGGA
AACTGGGGACAGCCCTGCACTGCGCCGCGGCAACTGGGAAACTGGGGTGC
TGCGAGTTCCTTATCCAGAACGGCGCTGACGTGCTCTCGCTGGACGAACG
GCAATGTAGCCCTCTGGACATGGCTTGCCTGGGCAATCGGGTATTTATCG
GTGCTGCGAGTTCCTTATCCAGAACGGCGCTGACGTGCTCTCGCTGGACG
AACGGCAATGTAGCCCTCTGGACATGGCTTGCCTGGGCAATCGGGTATTT
ATCGGTGCTGCGGTGGAGTATTTCTCAGACAAGATGGATCGGTAGGCGAA
CAAGACTTGGCGGGACATTTTAGGTGCTGCGGTGGAGTATTTCTCAGACA
AGATGGATCGGTAGGCGAACAAGACTTGGCGGGACATTTTAG
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