mRNA_Ecto-sp9_F_contig9985.18049.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9985.18049.1
Unique NamemRNA_Ecto-sp9_F_contig9985.18049.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9985.18049.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9985contigEcto-sp9_F_contig9985:2793..3738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_010110.1
Hectar predicted targeting categoryother localisation
Exons2
Model size617
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9985.18049.1prot_Ecto-sp9_F_contig9985.18049.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9985 2926..3665 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931095.4305918-UTR-Ecto-sp9_F_contig9985:2792..29251622931095.4305918-UTR-Ecto-sp9_F_contig9985:2792..2925Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9985 2793..2925 -
1692279031.012967-UTR-Ecto-sp9_F_contig9985:2792..29251692279031.012967-UTR-Ecto-sp9_F_contig9985:2792..2925Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9985 2793..2925 -
1622931095.5122955-UTR-Ecto-sp9_F_contig9985:3665..37381622931095.5122955-UTR-Ecto-sp9_F_contig9985:3665..3738Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9985 3666..3738 -
1692279031.0390759-UTR-Ecto-sp9_F_contig9985:3665..37381692279031.0390759-UTR-Ecto-sp9_F_contig9985:3665..3738Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9985 3666..3738 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931095.4707198-CDS-Ecto-sp9_F_contig9985:2925..29541622931095.4707198-CDS-Ecto-sp9_F_contig9985:2925..2954Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9985 2926..2954 -
1692279031.0226717-CDS-Ecto-sp9_F_contig9985:2925..29541692279031.0226717-CDS-Ecto-sp9_F_contig9985:2925..2954Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9985 2926..2954 -
1622931095.4911416-CDS-Ecto-sp9_F_contig9985:3283..36651622931095.4911416-CDS-Ecto-sp9_F_contig9985:3283..3665Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9985 3284..3665 -
1692279031.0307965-CDS-Ecto-sp9_F_contig9985:3283..36651692279031.0307965-CDS-Ecto-sp9_F_contig9985:3283..3665Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9985 3284..3665 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9985.18049.1

>prot_Ecto-sp9_F_contig9985.18049.1 ID=prot_Ecto-sp9_F_contig9985.18049.1|Name=mRNA_Ecto-sp9_F_contig9985.18049.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=137bp
MKGSSISTGERNIFLGKYIVKDLEPLSTESENFRDMQRGLHQNPDLIFPC
RKTMNAWVTDKAVEVKALIKEKVRGQPIALTGDGWDSTNGSGAFYALTAH
MMHPDTNNLMAYTLACRSWPRTDTPGETSPSSTSRF*
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mRNA from alignment at Ecto-sp9_F_contig9985:2793..3738-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9985.18049.1 ID=mRNA_Ecto-sp9_F_contig9985.18049.1|Name=mRNA_Ecto-sp9_F_contig9985.18049.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=946bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9985:2793..3738- (Ectocarpus species9 EcSCA_722f female)
CGTGCCTGCTCTCCTGTCTCTGTTTCCTCCTGTCTCTCCCTATACACGCG
TTTCACAGCTGGCGTTCCACAACATGAAGGGATCCTCCATCTCCACGGGG
GAAAGAAACATATTCTTGGGGAAGTACATCGTCAAAGACCTGGAGCCGCT
GAGCACTGAGTCGGAAAACTTCCGGGACATGCAGAGAGGATTGCACCAGA
ACCCCGACCTCATTTTCCCTTGTCGTAAGACCATGAACGCGTGGGTTACC
GACAAAGCAGTCGAAGTGAAGGCCTTGATCAAGGAGAAGGTTCGGGGGCA
GCCCATCGCCCTCACAGGCGATGGGTGGGATTCGACGAACGGGAGCGGAG
CCTTCTATGCCCTCACTGCGCACATGATGCATCCCGACACGAACAATCTT
ATGGCGTACACCCTTGCATGCCGAAGCTGGCCGCGGACCGACACACCGGG
CGAAAGTAAGTGCTTGTTTTTTTCATGTTGGGTTTTAGCCACAAAACGGG
TAGTATTTGTTGTGTTGACCCTATATTTTTTGTAGGTTGGGCATGGCATG
TGTTTGCTGGAAGTATGTTGAACAGCAACAGCAGCTACACGAATCAACTG
CTGCAACTGCTGCTGCTGCACATTTGTGCACACACATCATTAATAACCCA
CGTGTTGTTAGGGTAGGTTAGGTGTGACGGAGCACTTGGTACTTGGTAGT
TGCAGACTTGCACTCACTACTATTATGCCCAAGCAACATTTTTCTCGGTA
ACTTAGACGTCTCGTGTACGTTTTCCGCCCGCAGCATCTCCAAGCTCAAC
CTCGAGATTTTGAGCGAGTACGACATCAACCCCAGGGATGTGACAGTGTT
CACCTCCGACACTGCTGCAAACCAGAAGCTGGCAGTCAAGCTGATGGGCG
TCGAGTGGTTGGCCTGCTCATGCCACGTCTTCGAGCTGTCATCTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9985:2793..3738-

>mRNA_Ecto-sp9_F_contig9985.18049.1 ID=mRNA_Ecto-sp9_F_contig9985.18049.1|Name=mRNA_Ecto-sp9_F_contig9985.18049.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=822bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9985:2793..3738- (Ectocarpus species9 EcSCA_722f female)
ATGAAGGGATCCTCCATCTCCACGGGGGAAAGAAACATATTCTTGGGGAA
GTACATCGTCAAAGACCTGGAGCCGCTGAGCACTGAGTCGGAAAACTTCC
GGGACATGCAGAGAGGATTGCACCAGAACCCCGACCTCATTTTCCCTTGT
CGTAAGACCATGAACGCGTGGGTTACCGACAAAGCAGTCGAAGTGAAGGC
CTTGATCAAGGAGAAGGTTCGGGGGCAGCCCATCGCCCTCACAGGCGATG
GGTGGGATTCGACGAACGGGAGCGGAGCCTTCTATGCCCTCACTGCGCAC
ATGATGCATCCCGACACGAACAATCTTATGGCGTACACCCTTGCATGCCG
AAGCTGGCCGCGGACCGACACACCGGGCGAAAATGAAGGGATCCTCCATC
TCCACGGGGGAAAGAAACATATTCTTGGGGAAGTACATCGTCAAAGACCT
GGAGCCGCTGAGCACTGAGTCGGAAAACTTCCGGGACATGCAGAGAGGAT
TGCACCAGAACCCCGACCTCATTTTCCCTTGTCGTAAGACCATGAACGCG
TGGGTTACCGACAAAGCAGTCGAAGTGAAGGCCTTGATCAAGGAGAAGGT
TCGGGGGCAGCCCATCGCCCTCACAGGCGATGGGTGGGATTCGACGAACG
GGAGCGGAGCCTTCTATGCCCTCACTGCGCACATGATGCATCCCGACACG
AACAATCTTATGGCGTACACCCTTGCATGCCGAAGCTGGCCGCGGACCGA
CACACCGGGCGAAACATCTCCAAGCTCAACCTCGAGATTTTGACATCTCC
AAGCTCAACCTCGAGATTTTGA
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