mRNA_Ecto-sp9_F_contig9980.18046.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9980.18046.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM84_ECTSI) HSP 1 Score: 459 bits (1182), Expect = 2.550e-145 Identity = 254/291 (87.29%), Postives = 255/291 (87.63%), Query Frame = 1
Query: 1 RGASFGLGAIINQVSAEAFGGQLGRIVPRLFRYRFDPSAKTRAAMDQLWRAVV--------------------IHSNLSAIITELLRALGDRKWRDRQSACAGLSDVLRGRSWDEIGPHLEMLWTMADRGLDDIKESVAEAAVEYSKTVANISVRLCDPYNFVPSSRGXXXXXXXXXXXXXX-RNDAGGDGPDAVRQEAGEARRAIGTMLDDLRASEAEARARGEEGTMDDPAGGGXXXXALGTAEGRDGAADEVLRQVLEREQGAGEGAAGGVGRVLGGRRNGPTVDEIL 810
RGASFGLGAIINQVSAEAFGGQLGRIVPRLFRYRFDPSAKTRAAMDQLWRAVV IHSNLSAIITELLRALGDRKWRDRQSACAGLSDVLRGRSWDEIGPHLEMLWTMADRGLDDIKESVAEAAVEYSKTVANISVRLCDPYNFVPSSRG RNDAGGDGPDAVRQEAGEARRAIGTMLDDLRASEAEARARGEEGTMDDP+GG XXXXALGTAEGRDGAADEVLRQVLEREQGAGEGAAGGVGRVLGGRRNGPTVDEIL
Sbjct: 1249 RGASFGLGAIINQVSAEAFGGQLGRIVPRLFRYRFDPSAKTRAAMDQLWRAVVGXXXXXXXXXXDFSTREKEVIHSNLSAIITELLRALGDRKWRDRQSACAGLSDVLRGRSWDEIGPHLEMLWTMADRGLDDIKESVAEAAVEYSKTVANISVRLCDPYNFVPSSRGGGGAEGDTAVAAAAARNDAGGDGPDAVRQEAGEARRAIGTMLDDLRASEAEARARGEEGTMDDPSGGXXXXXALGTAEGRDGAADEVLRQVLEREQGAGEGAAGGVGRVLGGRRNGPTVDEIL 1539
BLAST of mRNA_Ecto-sp9_F_contig9980.18046.1 vs.
Match: Proteasome (component ECM29 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SLE9_9CHLO) HSP 1 Score: 133 bits (334), Expect = 5.670e-32 Identity = 62/145 (42.76%), Postives = 98/145 (67.59%), Query Frame = 1
Query: 1 RGASFGLGAIINQVSAEAFGGQLGRIVPRLFRYRFDPSAKTRAAMDQLWRAVV------IHSNLSAIITELLRALGDRKWRDRQSACAGLSDVLRGRSWDEIGPHLEMLWTMADRGLDDIKESVAEAAVEYSKTVANISVRLCDP 417
RGA+FG A I +++ E + ++P+LFRY++DP+ + AM +W A+V + ++L A+ ELL+ +G R WR+R+++CAGLSD+L+GR W E+ P E +W MA R +DDIKESV +AA + +T+ +++RLCDP
Sbjct: 150 RGAAFGF-ASIARLAGERLAPHVAALIPKLFRYQYDPNPRVADAMRHIWHALVADPKSAVDAHLDAVCAELLKEMGGRLWRNREASCAGLSDLLQGRRWAEVSPRFEEVWVMALRAVDDIKESVRQAAAKLLRTLRGLTLRLCDP 293
BLAST of mRNA_Ecto-sp9_F_contig9980.18046.1 vs.
Match: ARM (repeat-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2BTC4_9FUNG) HSP 1 Score: 130 bits (327), Expect = 1.700e-30 Identity = 66/145 (45.52%), Postives = 91/145 (62.76%), Query Frame = 1
Query: 1 RGASFGLGAIINQVSAEAFGGQLGRIVPRLFRYRFDPSAKTRAAMDQLWRAVV------IHSNLSAIITELLRALGDRKWRDRQSACAGLSDVLRGRSWDEIGPHLEMLWTMADRGLDDIKESVAEAAVEYSKTVANISVRLCDP 417
RGAS G G+I E L +IVP+L+R++FDP+AK +M +WR++V + N II +LL+ LGDR+WR R+S+C LSD++ GR +I P+L+ W M R LDDIKESV AA KT+ N++VR CDP
Sbjct: 1160 RGASMGFGSIAALAERE-LAPYLSQIVPKLYRFQFDPNAKVAESMKSIWRSLVKDPKKAVDENFDLIIKDLLKGLGDRQWRTRESSCLALSDIMHGRQLAQIKPYLQETWAMCFRALDDIKESVRVAAFTACKTLTNVTVRYCDP 1303
BLAST of mRNA_Ecto-sp9_F_contig9980.18046.1 vs.
Match: Uncharacterized (protein (Fragment) n=4 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LQH0_9CHLO) HSP 1 Score: 128 bits (322), Expect = 7.950e-30 Identity = 64/151 (42.38%), Postives = 94/151 (62.25%), Query Frame = 1
Query: 1 RGASFGLGAIINQVS------AEAFGGQLGRIVPRLFRYRFDPSAKTRAAMDQLWRAVV------IHSNLSAIITELLRALGDRKWRDRQSACAGLSDVLRGRSWDEIGPHLEMLWTMADRGLDDIKESVAEAAVEYSKTVANISVRLCDP 417
RGA+FG I S EA L +VP+L+RY DP+ + AM +WR++V + + +AI+T+LLR +G R WR+RQ+AC+ L D+L+GR W E+ P+L +WTM R LDDIK+SV AA+ ++TV +++RL DP
Sbjct: 1185 RGAAFGFAGIARLASRGGGAPGEALAKHLAVLVPKLYRYTHDPNPRVAEAMVAIWRSLVDDPRVTLDKHFAAIMTDLLREMGGRLWRNRQAACSALGDLLQGRRWPELSPYLSQIWTMTFRALDDIKDSVRRAALSLARTVRGLTLRLADP 1335
BLAST of mRNA_Ecto-sp9_F_contig9980.18046.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9W296_9CHLO) HSP 1 Score: 124 bits (311), Expect = 9.210e-30 Identity = 65/152 (42.76%), Postives = 97/152 (63.82%), Query Frame = 1
Query: 1 RGASFGLGAIINQVSAEAFGGQLGRIVPRLFRYRFDPSAKTRAAMDQLWRAVV------IHSNLSAIITELLRALGDRKWRDRQSACAGLSDVLRGRSWDEIGPHLEMLWTMADRGLDDIKESVAEAAVEYSKTVANISVRLCDPYNFVPSS 438
RGA+FG I A+ + +VP+L+RY++DP+ + + AM +WRA+V I + +AI+ ELLR +G R WR RQ+ACA L+D+L+GR + E+ P++E +WTM R LDDIKE+V AV + V +++RL DP F PS+
Sbjct: 92 RGAAFGFAGIARLAGAQ-LAPHVAALVPKLYRYQYDPNPRVQDAMAHIWRALVDDPRKTIDEHFAAIMRELLREMGGRLWRGRQAACAALADLLQGRRYAEVAPYMEEVWTMTLRCLDDIKETVRTQAVALVRCVRGLTLRLVDP-QFTPSA 241
BLAST of mRNA_Ecto-sp9_F_contig9980.18046.1 vs.
Match: Proteasome-associated (ECM29-like protein n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VC99_9CHLO) HSP 1 Score: 126 bits (316), Expect = 4.990e-29 Identity = 66/154 (42.86%), Postives = 95/154 (61.69%), Query Frame = 1
Query: 1 RGASFGLGAIINQVSAEAFGGQLGRIVPRLFRYRFDPSAKTRAAMDQLWRAVV------IHSNLSAIITELLRALGDRKWRDRQSACAGLSDVLRGRSWDEIGPHLEMLWTMADRGLDDIKESVAEAAVEYSKTVANISVRLCDPYNFVPSSRG 444
RGA+FG A I +++ E G + RI+PRL+RY +DP+ K R AM +W A++ + N AI+ LL LG +WR R++A +SD+L+GR WDE+ PH LW M R +DDIKESV A V +++V +++RL DP P S+G
Sbjct: 1360 RGAAFGF-ASIAKLAGEQLGPHIARILPRLYRYLYDPNGKVRDAMSHIWHALLDDPKAAVAQNFDAIMKALLADLGGGQWRVREAAALAMSDLLQGRRWDELAPHFAALWEMTLRVMDDIKESVRVAGVALARSVRGLTLRLVDP-ELTPPSQG 1511
BLAST of mRNA_Ecto-sp9_F_contig9980.18046.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FAM2_9FUNG) HSP 1 Score: 125 bits (314), Expect = 9.070e-29 Identity = 62/145 (42.76%), Postives = 91/145 (62.76%), Query Frame = 1
Query: 1 RGASFGLGAIINQVSAEAFGGQLGRIVPRLFRYRFDPSAKTRAAMDQLWRAVV------IHSNLSAIITELLRALGDRKWRDRQSACAGLSDVLRGRSWDEIGPHLEMLWTMADRGLDDIKESVAEAAVEYSKTVANISVRLCDP 417
RGAS G G+I E L +IVP+L+R++FDP+AK +M +WR++V + + I+ +LL+ LGDR WR R+S+C LS++L GR D++ P L+ +W+M R LDDIKESV AA KT+ ++V+ CDP
Sbjct: 1142 RGASMGFGSIAALAERE-LAPYLNQIVPKLYRFQFDPNAKVAESMKSIWRSLVKDPKKAVDDHFDVIVKDLLKGLGDRMWRTRESSCLALSELLHGRQLDQVKPFLQEVWSMCFRALDDIKESVRVAAFATCKTLTGVTVKYCDP 1285
BLAST of mRNA_Ecto-sp9_F_contig9980.18046.1 vs.
Match: Uncharacterized (protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4PDC1_BATDJ) HSP 1 Score: 125 bits (313), Expect = 1.260e-28 Identity = 65/147 (44.22%), Postives = 91/147 (61.90%), Query Frame = 1
Query: 1 RGASFGLGAIINQVSAEAFGGQLGRIVPRLFRYRFDPSAKTRAAMDQLWRAVV------IHSNLSAIITELLRALGDRKWRDRQSACAGLSDVLRGRSWDEIGPHLEMLWTMADRGLDDIKESVAEAAVEYSKTVANISVRLCDPYN 423
RGAS G +I Q E L +VPRL+RY+FDP+ K +M +WRA+V + + + I+ ++L +LGDR WR R+++CA L+D L GR E+ P+L+ LWTM R LDDIKE+V AA KT+ ++VR CDP N
Sbjct: 1588 RGASMGFESIAAQAERE-LQQHLPSLVPRLYRYQFDPNQKVAESMKNIWRALVKNPKKAMDTYMDLILEDILNSLGDRMWRTREASCAALADFLSGRQMSEMEPYLQRLWTMCFRALDDIKETVRNAAFLTCKTLTKMTVRYCDPSN 1733
BLAST of mRNA_Ecto-sp9_F_contig9980.18046.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X924_9CHLO) HSP 1 Score: 124 bits (312), Expect = 1.690e-28 Identity = 63/149 (42.28%), Postives = 100/149 (67.11%), Query Frame = 1
Query: 1 RGASFGLGAIINQVSAEAFGGQL----GRIVPRLFRYRFDPSAKTRAAMDQLWRAVV------IHSNLSAIITELLRALGDRKWRDRQSACAGLSDVLRGRSWDEIGPHLEMLWTMADRGLDDIKESVAEAAVEYSKTVANISVRLCDP 417
RGA+FG+ I A GGQL G ++P+L+RY++DP+ K + AM+ +WR++V I + +AI+ +L++ +G R WR+RQ++ A L D+L+GR W+E+ P E +W+MA R LDDIKE+V A+ K+++N++VRL DP
Sbjct: 1252 RGAAFGIAGI-----ARLAGGQLASHMGSLIPKLYRYQYDPNQKVQDAMEHIWRSIVDEPRKAIDEHFAAIMQDLVKEMGGRLWRNRQASAAALLDLLQGRRWNELKPFYENIWSMALRCLDDIKETVRRQAILLVKSLSNLTVRLVDP 1395
BLAST of mRNA_Ecto-sp9_F_contig9980.18046.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DTH4_CHLRE) HSP 1 Score: 124 bits (312), Expect = 1.690e-28 Identity = 58/123 (47.15%), Postives = 82/123 (66.67%), Query Frame = 1
Query: 67 LGRIVPRLFRYRFDPSAKTRAAMDQLWRAVV------IHSNLSAIITELLRALGDRKWRDRQSACAGLSDVLRGRSWDEIGPHLEMLWTMADRGLDDIKESVAEAAVEYSKTVANISVRLCDP 417
L ++P+L+RY DP+ K AM +WRA+V + + AI+ +LLR G R WR+RQ+ACA LSD+L+GR W E+ PH LWTM R +DDIKESV AA++ ++TV +++RL DP
Sbjct: 1682 LSTLIPKLYRYTHDPNPKVAEAMVAIWRALVDDPRATLDKHFGAIMIDLLREAGGRLWRNRQAACAALSDLLQGRRWPELAPHFGQLWTMTLRAMDDIKESVRRAALQLARTVRGLTLRLADP 1804 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9980.18046.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9980.18046.1 >prot_Ecto-sp9_F_contig9980.18046.1 ID=prot_Ecto-sp9_F_contig9980.18046.1|Name=mRNA_Ecto-sp9_F_contig9980.18046.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=270bp RGASFGLGAIINQVSAEAFGGQLGRIVPRLFRYRFDPSAKTRAAMDQLWRback to top mRNA from alignment at Ecto-sp9_F_contig9980:2056..4015+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9980.18046.1 ID=mRNA_Ecto-sp9_F_contig9980.18046.1|Name=mRNA_Ecto-sp9_F_contig9980.18046.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1960bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9980:2056..4015+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9980:2056..4015+ >mRNA_Ecto-sp9_F_contig9980.18046.1 ID=mRNA_Ecto-sp9_F_contig9980.18046.1|Name=mRNA_Ecto-sp9_F_contig9980.18046.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1620bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9980:2056..4015+ (Ectocarpus species9 EcSCA_722f female)back to top |