mRNA_Ecto-sp9_F_contig998.18044.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig998.18044.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J1_ECTSI) HSP 1 Score: 311 bits (796), Expect = 8.080e-98 Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 2
Query: 245 MCSQVCDFHGRAVAHPQESVVPSALAACFMSGSLEQHLVFTGLVGAGPHLDYLTTTVYFSINSGRPLARAAGPMQVGEDERVYVAVKYPTMNELWPEIYQNVAVEVVQVDVFITVRSGHKTIRYPGTELKVTYRRTRMSPDVVDYDDDDEEE 700
MCSQVCDFHGRAVAHPQESVVPSALAACFMSGSLEQHLVFTGLVGAGPHLDYLTTTVYFSINSGRPLARAAGPMQVGEDERVYVAVKYPTMNELWPEIYQNVAVEVVQVDVFITVRSGHKTIRYPGTELKVTYRRTRMSPDVVDYDDDDEEE
Sbjct: 1 MCSQVCDFHGRAVAHPQESVVPSALAACFMSGSLEQHLVFTGLVGAGPHLDYLTTTVYFSINSGRPLARAAGPMQVGEDERVYVAVKYPTMNELWPEIYQNVAVEVVQVDVFITVRSGHKTIRYPGTELKVTYRRTRMSPDVVDYDDDDEEE 152
BLAST of mRNA_Ecto-sp9_F_contig998.18044.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3B8_9PHAE) HSP 1 Score: 209 bits (532), Expect = 6.750e-60 Identity = 103/112 (91.96%), Postives = 107/112 (95.54%), Query Frame = 2
Query: 254 QVCDFHGRAVAHPQESVVPSALAACFMSGSLEQHLVFTGLVGAGPHLDYLTTTVYFSINSGRPLARAAGPMQVGEDERVYVAVKYPTMNELWPEIYQNVAVEVVQVDVFITV 589
QVCDFHGRAVAHPQESV SALAACFMSGSLEQHLVFTGLVGAGP LDYLTTTVYFSINSGRPLARAAGPMQVGEDERVYVAVK+PTMNELWPEIYQNVAVEVVQV +F ++
Sbjct: 13 QVCDFHGRAVAHPQESVDSSALAACFMSGSLEQHLVFTGLVGAGPDLDYLTTTVYFSINSGRPLARAAGPMQVGEDERVYVAVKFPTMNELWPEIYQNVAVEVVQVRLFPSI 124
BLAST of mRNA_Ecto-sp9_F_contig998.18044.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C2_9PHAE) HSP 1 Score: 139 bits (349), Expect = 5.480e-35 Identity = 71/106 (66.98%), Postives = 83/106 (78.30%), Query Frame = 2
Query: 272 GRAVAHPQESVVPSALAACFMSGSLEQHLVFTGLVGAGPHLDYLTTTVYFSINSGRPLARAAGPMQVGEDERVYVAVKYPTMNELWPEIYQNVAVEVVQVDVFITV 589
GRAVA PQESV S LA +SGS EQHLVFT L GAGPHL +LT TV+FSI +G L RA GPMQV +D RVYVAVK P+++ELWPEIY N ++ VVQVDV++TV
Sbjct: 6 GRAVAQPQESVDRSPLATFLLSGSREQHLVFTELDGAGPHLAHLTPTVHFSITAGHSLERAGGPMQVRKDGRVYVAVKCPSISELWPEIYNNRSIRVVQVDVYVTV 111
BLAST of mRNA_Ecto-sp9_F_contig998.18044.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL1_ECTSI) HSP 1 Score: 108 bits (271), Expect = 6.090e-22 Identity = 59/129 (45.74%), Postives = 72/129 (55.81%), Query Frame = 2
Query: 263 DFHGRAVAHPQESVVPSALAACFMSGSLEQHLVFTGLVGAGPHLDYLTTTVYFSINSGRPLARAAGPMQVGEDERVYVAVKYPTMNELWPEIYQNVAVEVVQVDVFITVRSGHKTIRYPGTELKVTYRR 649
DF GR + + S P A A EQHLVF GL G L L FS N GR R GP+Q G + RVY AV+YP+M ELWPE+Y + A+ VV+VD+ + VRS + Y TELK YRR
Sbjct: 210 DFEGRTIEPNKPSDSPFAAAFSVPRSDDEQHLVFIGLGETGRPLPTLAARAQFSANPGRKAERMVGPLQAGSNGRVYGAVQYPSMAELWPEVYNSTAIRVVKVDMLVEVRSRYGDSLYLATELKAMYRR 338
BLAST of mRNA_Ecto-sp9_F_contig998.18044.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ42_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 9.320e-18 Identity = 57/131 (43.51%), Postives = 70/131 (53.44%), Query Frame = 2
Query: 263 DFHGRAVAHPQESVVPSALAACFMSGSLEQHLVFTGLVGAGPHLDYLTTTVYFSINSGRPLARAAGPMQV--GEDERVYVAVKYPTMNELWPEIYQNVAVEVVQVDVFITVRSGHKTIRYPGTELKVTYRR 649
DF GR + + S P A A EQ+LVF GL G L L FS N GR R GP+Q G + RVY AV+YP+M ELWPE+Y + A+ VV+VD+ + VRS Y TEL YRR
Sbjct: 292 DFEGRTIEPNKPSGSPFAAALSVPRSDDEQYLVFIGLGETGRPLPALAARAQFSANPGRQAERMVGPLQARAGSNGRVYGAVQYPSMAELWPEVYNSKAIRVVKVDMLVEVRSRSGDSLYLATELMAMYRR 422
BLAST of mRNA_Ecto-sp9_F_contig998.18044.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ7_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 2.480e-16 Identity = 56/134 (41.79%), Postives = 73/134 (54.48%), Query Frame = 2
Query: 263 DFHGRAVAHPQESVVPSALAACFMSGSLE--QHLVFTGLVGAGPHLDYLTTTVYFSINSGRPLARAAGPMQVGEDERVYVAVKYPTMNELWPEIYQNVAVEVVQVDVFITVRSGHKTIRYPGTELKVTYRRTRM 658
DF GR+ P S A+ F + Q+L FTGL G L LT V FS+NS R GP+Q G + RVY A++YP+M+ELWPEI AV VVQVD + +RS + G KVTYR+ ++
Sbjct: 476 DFDGRSY-QPDNPPKDSPFASVFSVPCSDEAQYLAFTGLGHTGQPLRMLTARVQFSVNSERTAESVVGPLQAGGNGRVYGALRYPSMSELWPEICSTSAVRVVQVDTLVDIRSRQGDFLFLGNGPKVTYRQAQV 608
BLAST of mRNA_Ecto-sp9_F_contig998.18044.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ48_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 2.970e-16 Identity = 51/140 (36.43%), Postives = 72/140 (51.43%), Query Frame = 2
Query: 260 CDFHGRAVAHPQESVVPSALAACFMSGSLEQ-HLVFTGLVGAGPHLDYLTTTVYFSINSGRPLARAAGPMQVGEDERVYVAVKYPTMNELWPEIYQNVAVEVVQVDVFITVRSGHKTIRYPGTELKVTYRRTRMSPDVVD 676
CDF GR P P + S + Q HLVFTGL G L L T +F ++S + + P+Q+G + R Y V YP+M E+WPE+Y + VV+VD+ + +RS +Y G +LKVTY R D +
Sbjct: 384 CDFEGR----PTPPTDPKSGEPPIPSSTDRQCHLVFTGLNNTGQDLRSLRVTAHFGVDSVHKVGKVTSPIQLGSNGRAYAGVFYPSMQEIWPELYSTSNIRVVEVDLVVEIRSDSGEYQYVGPQLKVTYLRAAPPADAAE 519
BLAST of mRNA_Ecto-sp9_F_contig998.18044.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N4_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 7.010e-15 Identity = 48/127 (37.80%), Postives = 66/127 (51.97%), Query Frame = 2
Query: 260 CDFHGRAVAHPQESVVPSALAACFMSGSLEQHLVFTGLVGAGPHLDYLTTTVYFSINSGRPLARAAGPMQVGEDERVYVAVKYPTMNELWPEIYQNVAVEVVQVDVFITVRSGH-KTIRYPGTELKV 637
CDF GR + + PS+ + S + H+VFTGL G L TV F +++ +A P+QV D R Y V YP++ E+WPE+Y V V V+VDV + V S + RY G LKV
Sbjct: 56 CDFEGRPLPGGGSGMTPSSTVS---SNGRDTHVVFTGLNDTGHDPRGLRVTVIFGVDAVHQIACVTSPIQVAADGRAYSRVFYPSLEEVWPELYYTVDVRAVEVDVAVEVLSDDGREFRYVGPHLKV 179
BLAST of mRNA_Ecto-sp9_F_contig998.18044.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ6_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 1.160e-14 Identity = 51/138 (36.96%), Postives = 73/138 (52.90%), Query Frame = 2
Query: 260 CDFHGRAVAHPQESVVPSALAACFMSGSLEQHLVFTGLVGAGPHLDYLTTTVYFSINSGRPLARAAGPMQVGEDERVYVAVKYPTMNELWPEIYQNVAVEVVQVDVFITVRSGH-KTIRYPGTELKVTYRRTRMSPDV 670
CDF GR + + PS+ + S + H+VFTGL G L TV F +++ +A P+QV D R Y V YP++ ++WPE+Y V V V+VDV + + S + RY G LKV Y TR++P V
Sbjct: 234 CDFEGRPLPGGGSGMTPSSTVS---SNGRDTHVVFTGLHNTGHDPRGLRVTVIFGVDAVHQIACVTSPVQVAADGRAYSRVFYPSLEDVWPELYYTVDVRAVEVDVAVEILSDDGREFRYVGPHLKVGY--TRITPPV 366
BLAST of mRNA_Ecto-sp9_F_contig998.18044.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU4_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 8.610e-8 Identity = 46/109 (42.20%), Postives = 57/109 (52.29%), Query Frame = 2
Query: 254 QVCDFHGRAVAHPQESVVPSALAACFM--SGSLEQHLVFTGLVGAGPHLDYLTTTVYFSINSGRPLARAAGPMQVGEDERVYVAVKYPTMNELWPEIYQNVAVEVVQVD 574
Q DF GR+ P S A+ F EQ+L FTGL G L LT V FS+NS AG + RVY A++YP+M+ELWPEI + AV VVQV+
Sbjct: 515 QEFDFDGRSY-QPDNLAKDSPFASVFSVPCSDEEQYLAFTGLGHTGQPLRMLTARVQFSVNSEHTAESVAGG-----NGRVYGALRYPSMSELWPEICRTSAVRVVQVE 617 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig998.18044.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig998.18044.1 >prot_Ecto-sp9_F_contig998.18044.1 ID=prot_Ecto-sp9_F_contig998.18044.1|Name=mRNA_Ecto-sp9_F_contig998.18044.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=153bp MCSQVCDFHGRAVAHPQESVVPSALAACFMSGSLEQHLVFTGLVGAGPHLback to top mRNA from alignment at Ecto-sp9_F_contig998:18702..24944+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig998.18044.1 ID=mRNA_Ecto-sp9_F_contig998.18044.1|Name=mRNA_Ecto-sp9_F_contig998.18044.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=6243bp|location=Sequence derived from alignment at Ecto-sp9_F_contig998:18702..24944+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig998:18702..24944+ >mRNA_Ecto-sp9_F_contig998.18044.1 ID=mRNA_Ecto-sp9_F_contig998.18044.1|Name=mRNA_Ecto-sp9_F_contig998.18044.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=918bp|location=Sequence derived from alignment at Ecto-sp9_F_contig998:18702..24944+ (Ectocarpus species9 EcSCA_722f female)back to top |