mRNA_Ecto-sp9_F_contig997.18034.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig997.18034.1
Unique NamemRNA_Ecto-sp9_F_contig997.18034.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig997.18034.1 vs.
Match: HEAT (repeat-containing protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ23_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 2.490e-68
Identity = 135/156 (86.54%), Postives = 141/156 (90.38%), Query Frame = -2 
Query:    3 SAGIKQARDSALSLLLECLPGPHATARVKSAQRPAVGAGGRGDGATEESATDPAAAAA-TGKACKKASRAVGRAAIEAVSRLGVGGKGDALAGLFAVVGKVLEKSDDGESGKGSAAKSPGKNKSKRXXXGDGDDLESEGVKSKGLKVMGEEVCDAL 467
            SAG+KQARD ALSLLLECLPGPHATARV+SAQR AVGA GRGD AT+E ATDPAAAAA TGKACKKASRAVGRAAIEAVSRLGVG +GDALAGLFAVVGKVL KSDD  SGKGSAAKSPGKN SK+   GD DDLE+EGVKSKGLKVMGEEVCDAL
Sbjct:  729 SAGVKQARDPALSLLLECLPGPHATARVRSAQRQAVGADGRGDSATDEGATDPAAAAAATGKACKKASRAVGRAAIEAVSRLGVGVEGDALAGLFAVVGKVLNKSDDEGSGKGSAAKSPGKNNSKKKKSGDADDLEAEGVKSKGLKVMGEEVCDAL 884
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BLAST of mRNA_Ecto-sp9_F_contig997.18034.1 vs.
Match: HEAT (repeat-containing protein 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF89_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 1.460e-64
Identity = 130/156 (83.33%), Postives = 139/156 (89.10%), Query Frame = -2 
Query:    3 VSAGIKQARDSALSLLLECLPGPHATARVKSAQRPAVGAGGRGDGATEESATDPAAAAATGKACKKASRAVGRAAIEAVSRLGVGGKGDALAGLFAVVGKVLEKSDDGESGKGSAAKSPGKNKSKRXXXGDGDDLESEGVKSKGLKVMGEEVCDAL 470
            VSAG++QARDSA+SLLLECLPGPHATARVKSAQR AV A GRGD ATEE ATDPAAA ATGKACKKASRAVGRAAI+AVSRLGVG KG+ALAGLFAVV KVLEK D+  SGKGSAAK+PGK+K KR   GD  DLE+EGVKSKGLKVMGEEVCDAL
Sbjct:  648 VSAGVEQARDSAMSLLLECLPGPHATARVKSAQRQAVCADGRGDLATEEGATDPAAATATGKACKKASRAVGRAAIKAVSRLGVGVKGEALAGLFAVVKKVLEKPDNEGSGKGSAAKNPGKDKDKRKKSGDEVDLEAEGVKSKGLKVMGEEVCDAL 803
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig997.18034.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
HEAT2.490e-6886.54repeat-containing protein 1 n=1 Tax=Ectocarpus sil... [more]
HEAT1.460e-6483.33repeat-containing protein 1 n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig997contigEcto-sp9_F_contig997:8704..9176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size473
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931093.7806947-CDS-Ecto-sp9_F_contig997:8703..91741622931093.7806947-CDS-Ecto-sp9_F_contig997:8703..9174Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig997 8704..9174 +
1692279030.3087428-CDS-Ecto-sp9_F_contig997:8703..91741692279030.3087428-CDS-Ecto-sp9_F_contig997:8703..9174Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig997 8704..9174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig997.18034.1prot_Ecto-sp9_F_contig997.18034.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig997 8704..9174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig997.18034.1

>prot_Ecto-sp9_F_contig997.18034.1 ID=prot_Ecto-sp9_F_contig997.18034.1|Name=mRNA_Ecto-sp9_F_contig997.18034.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=157bp
ARASQTSSPITLRPFDLTPSDSRSSPSPDFFLLLLFLPGDLAAEPLPLSP
SSDFSKTLPTTAKRPAKASPFPPTPNLLTASIAARPTALEAFLQAFPVAA
AAAGSVALSSVAPSPRPPAPTAGRWADFTRAVACGPGRHSSSSDSAESLA
CLIPADT
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mRNA from alignment at Ecto-sp9_F_contig997:8704..9176+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig997.18034.1 ID=mRNA_Ecto-sp9_F_contig997.18034.1|Name=mRNA_Ecto-sp9_F_contig997.18034.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=473bp|location=Sequence derived from alignment at Ecto-sp9_F_contig997:8704..9176+ (Ectocarpus species9 EcSCA_722f female)
GCCAGAGCATCGCAAACCTCCTCCCCCATCACCTTGAGGCCCTTCGACTT
GACCCCTTCCGACTCCAGGTCGTCGCCGTCACCCGACTTTTTCCTCTTGC
TCTTGTTCTTGCCGGGGGACTTGGCGGCGGAACCCTTGCCGCTTTCTCCG
TCGTCGGACTTCTCCAAAACCTTACCGACAACGGCGAAGAGACCGGCCAA
GGCGTCGCCCTTCCCGCCAACACCCAACCTGCTGACGGCCTCTATCGCCG
CGCGGCCGACCGCTCTCGAGGCCTTCTTGCAAGCTTTTCCGGTGGCGGCG
GCGGCGGCCGGGTCCGTGGCACTCTCCTCAGTAGCACCATCCCCGCGGCC
GCCTGCACCGACGGCCGGTCGCTGGGCCGACTTCACGCGAGCGGTCGCGT
GCGGGCCCGGCAGACACTCCAGCAGCAGCGACAGCGCCGAATCTCTGGCC
TGTTTGATCCCCGCAGATACTCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig997:8704..9176+

>mRNA_Ecto-sp9_F_contig997.18034.1 ID=mRNA_Ecto-sp9_F_contig997.18034.1|Name=mRNA_Ecto-sp9_F_contig997.18034.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=942bp|location=Sequence derived from alignment at Ecto-sp9_F_contig997:8704..9176+ (Ectocarpus species9 EcSCA_722f female)
GCCAGAGCATCGCAAACCTCCTCCCCCATCACCTTGAGGCCCTTCGACTT
GACCCCTTCCGACTCCAGGTCGTCGCCGTCACCCGACTTTTTCCTCTTGC
TCTTGTTCTTGCCGGGGGACTTGGCGGCGGAACCCTTGCCGCTTTCTCCG
TCGTCGGACTTCTCCAAAACCTTACCGACAACGGCGAAGAGACCGGCCAA
GGCGTCGCCCTTCCCGCCAACACCCAACCTGCTGACGGCCTCTATCGCCG
CGCGGCCGACCGCTCTCGAGGCCTTCTTGCAAGCTTTTCCGGTGGCGGCG
GCGGCGGCCGGGTCCGTGGCACTCTCCTCAGTAGCACCATCCCCGCGGCC
GCCTGCACCGACGGCCGGTCGCTGGGCCGACTTCACGCGAGCGGTCGCGT
GCGGGCCCGGCAGACACTCCAGCAGCAGCGACAGCGCCGAATCTCTGGCC
TGTTTGATCCCCGCAGATACTGCCAGAGCATCGCAAACCTCCTCCCCCAT
CACCTTGAGGCCCTTCGACTTGACCCCTTCCGACTCCAGGTCGTCGCCGT
CACCCGACTTTTTCCTCTTGCTCTTGTTCTTGCCGGGGGACTTGGCGGCG
GAACCCTTGCCGCTTTCTCCGTCGTCGGACTTCTCCAAAACCTTACCGAC
AACGGCGAAGAGACCGGCCAAGGCGTCGCCCTTCCCGCCAACACCCAACC
TGCTGACGGCCTCTATCGCCGCGCGGCCGACCGCTCTCGAGGCCTTCTTG
CAAGCTTTTCCGGTGGCGGCGGCGGCGGCCGGGTCCGTGGCACTCTCCTC
AGTAGCACCATCCCCGCGGCCGCCTGCACCGACGGCCGGTCGCTGGGCCG
ACTTCACGCGAGCGGTCGCGTGCGGGCCCGGCAGACACTCCAGCAGCAGC
GACAGCGCCGAATCTCTGGCCTGTTTGATCCCCGCAGATACT
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