mRNA_Ecto-sp9_F_contig9966.18031.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9966.18031.1
Unique NamemRNA_Ecto-sp9_F_contig9966.18031.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9966.18031.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9966contigEcto-sp9_F_contig9966:1316..2973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_001620.2
Exons2
Model size256
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931093.5001152-CDS-Ecto-sp9_F_contig9966:1316..14641622931093.5001152-CDS-Ecto-sp9_F_contig9966:1316..1464Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9966 1317..1464 -
1692279030.1753063-CDS-Ecto-sp9_F_contig9966:1316..14641692279030.1753063-CDS-Ecto-sp9_F_contig9966:1316..1464Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9966 1317..1464 -
1622931093.5177867-CDS-Ecto-sp9_F_contig9966:2866..29731622931093.5177867-CDS-Ecto-sp9_F_contig9966:2866..2973Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9966 2867..2973 -
1692279030.1868849-CDS-Ecto-sp9_F_contig9966:2866..29731692279030.1868849-CDS-Ecto-sp9_F_contig9966:2866..2973Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9966 2867..2973 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9966.18031.1prot_Ecto-sp9_F_contig9966.18031.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9966 1317..2973 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9966.18031.1

>prot_Ecto-sp9_F_contig9966.18031.1 ID=prot_Ecto-sp9_F_contig9966.18031.1|Name=mRNA_Ecto-sp9_F_contig9966.18031.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=85bp
RSGASPRCACHPPGTPHSQDSRATARSTTSPRGAVRILRPAGIAQTSDIK
TRSTSTRGKKDNSSKHAPHTEHRYQRISPGRQEAG
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mRNA from alignment at Ecto-sp9_F_contig9966:1316..2973-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9966.18031.1 ID=mRNA_Ecto-sp9_F_contig9966.18031.1|Name=mRNA_Ecto-sp9_F_contig9966.18031.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1658bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9966:1316..2973- (Ectocarpus species9 EcSCA_722f female)
AGAAGCGGGGCCTCACCGAGGTGTGCATGCCACCCCCCAGGTACTCCTCA
TTCCCAGGATTCCAGAGCGACCGCCAGATCTACGACCTCACCAAGAGGCG
CCGTACGGTGAGAGCTTCTTGACACCTCACTGCAATAGCTGGGCCCGTAT
GCGTTGCTATTTATGGGCTATCCCTGGTGCATGCCACCACTTTTGGCCGC
AGACAAAGCGAACAGGCCGCGAAAAACTCAAGGACAAATTGAAGCATTCA
AACAAAGGAACATCACCACCACCAATCAATACTGCTCACTGAACAGCACC
AGCTGATGCAGAGCTCCTACGTACTGCTGCGCCAGCAATCGCTAATTTAG
CACAGCAGTAATGCGGTGGGGACGCGGAGCATTTGTTTTCGGCACCCACA
TAGGGCTCAAGAATCTTCGTTCGAACAGATATGTGGCAATGTACTCTAGC
AGCGAGAGCTCAACGGCATGCTTGGGTAGGGAGCGTGGGAGATACCCGAC
CATTACCTATCCGCAGCTCGAATTTTGCAAGGATCAAAACACTCTACAAA
GATACAAAGATACCGTATGCACCTACAAAGATACCGTATGCACCGCTCGC
GGGCCAGTTTTTGGCACGATTCTTCTCTCTACACCAACCCCTTGGGGTGT
CGGCTACAGACCCTCCGCAGGTTCATCGAGAGAACGCATGTGCTGCGAGT
AGGTCATGGTGGCCACGTTCTTGTACAATACATCTTTTTTCATTCTGCCA
AAAAATGTGTTATTAATAGCTCAACTAGAGGTGTGACAATGACCTGTGAA
AGCAAGATCCTATTGGCACCCTTGTATGTGGAGCATGGTGGAGTGGCGCA
GCCTCCAAGTCTCCGAAAAGTGCTGATTTTTTCAAAGCAAAACGCGCCGG
ATCATCGAACTATTGCTGTCGTACCTCTCAGAGCCCCATCTTCGGCAAGG
ACATAGAAGGTGTCCATCTTCACGGAATGCCCCTCTTGCGGTCCTGTTCC
AGGCCCTGTGTGTGTCGCGGTGGCTCGTCGAAGTGAGGTGCTAGGATGCC
GCAGGTCCCTTTCCCCTGCAGAGAAACGCCTGCTGCAGAATCCCCGGGAG
GTGGTTCCACCGCAAATTACTTGAAAAAACAGTGCGGCACCTACAATACT
GGTATCATTTTTTTCCATATACCTTTGGGGACAATTTAGGTAACTTCACA
ACGAAGGGGGATCGCCGACGTTCAAGTAGGGTTCGATGATGTCAAACATA
GGTGCCGTAACCCTGGCCATCGGTCAGTGCATGTTTTCCACAAGTCTCGG
TGACGGAGAAGGCTTGTGGAACAAATGCACCGGTACTTGACGCACAGATT
ATGGCGTCGTCAGAATGCGGCCGACGCGAGAAAATTAATCTGTCCTGCTG
TACGGTAACCGACACAGGGAGATAATGAGCACAGCAGCACAACCCCCAAC
AGCAGCAGCCCCTGTTGTTCTCACATCTCACACCCGCCTGCTTGTGGATG
TGCACACAGGATCTTGAGACCAGCAGGGATTGCACAGACATCAGACATCA
AGACCCGATCTACAAGCACCAGAGGCAAGAAGGACAACAGCAGCAAGCAT
GCCCCGCACACAGAGCATCGATATCAGCGGATATCACCCGGACGGCAAGA
AGCGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9966:1316..2973-

>mRNA_Ecto-sp9_F_contig9966.18031.1 ID=mRNA_Ecto-sp9_F_contig9966.18031.1|Name=mRNA_Ecto-sp9_F_contig9966.18031.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9966:1316..2973- (Ectocarpus species9 EcSCA_722f female)
AGAAGCGGGGCCTCACCGAGGTGTGCATGCCACCCCCCAGGTACTCCTCA
TTCCCAGGATTCCAGAGCGACCGCCAGATCTACGACCTCACCAAGAGGCG
CCGTACGAGAAGCGGGGCCTCACCGAGGTGTGCATGCCACCCCCCAGGTA
CTCCTCATTCCCAGGATTCCAGAGCGACCGCCAGATCTACGACCTCACCA
AGAGGCGCCGTACGGATCTTGAGACCAGCAGGGATTGCACAGACATCAGA
CATCAAGACCCGATCTACAAGCACCAGAGGCAAGAAGGACAACAGCAGCA
AGCATGCCCCGCACACAGAGCATCGATATCAGCGGATATCACCCGGACGG
CAAGAAGCGGGGGATCTTGAGACCAGCAGGGATTGCACAGACATCAGACA
TCAAGACCCGATCTACAAGCACCAGAGGCAAGAAGGACAACAGCAGCAAG
CATGCCCCGCACACAGAGCATCGATATCAGCGGATATCACCCGGACGGCA
AGAAGCGGGG
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