mRNA_Ecto-sp9_F_contig996.18024.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig996.18024.1
Unique NamemRNA_Ecto-sp9_F_contig996.18024.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig996.18024.1 vs.
Match: 40S (ribosomal protein S14 n=3 Tax=Sar TaxID=2698737 RepID=D7FYS4_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 1.400e-97
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1 
Query:    4 ADKKTKEDKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 453
            ADKKTKEDKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL
Sbjct:    2 ADKKTKEDKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 151
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BLAST of mRNA_Ecto-sp9_F_contig996.18024.1 vs.
Match: Uncharacterized (protein n=7 Tax=Magnoliopsida TaxID=3398 RepID=K3YAJ9_SETIT)

HSP 1 Score: 258 bits (658), Expect = 1.680e-84
Identity = 133/148 (89.86%), Postives = 140/148 (94.59%), Query Frame = 1 
Query:   10 KKTKEDKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 453
            KKT+E K EE VTLGP V EGE VFGVAHIFASFNDTF+HITDLSGRETMVR+TGGMKVKADRDE+SPYAAMLAAQDVA RCKELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GMKIGRIEDVTP+PTD TRRKGGRRGRRL
Sbjct:    5 KKTREPK-EENVTLGPAVREGEYVFGVAHIFASFNDTFIHITDLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRRKGGRRGRRL 151
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BLAST of mRNA_Ecto-sp9_F_contig996.18024.1 vs.
Match: Uncharacterized (protein n=8 Tax=Magnoliopsida TaxID=3398 RepID=W1PY91_AMBTC)

HSP 1 Score: 256 bits (655), Expect = 4.800e-84
Identity = 131/148 (88.51%), Postives = 141/148 (95.27%), Query Frame = 1 
Query:   10 KKTKEDKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 453
            KKT+E K EE VTLGP V EGE+VFGVAH+FASFNDTFVH+TDLSGRET+VR+TGGMKVKADRDE+SPYAAMLAAQDVA RCKELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GM+IGRIEDVTPIPTD TRRKGGRRGRRL
Sbjct:    5 KKTREPK-EENVTLGPTVREGEHVFGVAHVFASFNDTFVHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 151
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BLAST of mRNA_Ecto-sp9_F_contig996.18024.1 vs.
Match: Uncharacterized (protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835RMY5_VANPL)

HSP 1 Score: 258 bits (658), Expect = 6.510e-84
Identity = 132/148 (89.19%), Postives = 141/148 (95.27%), Query Frame = 1 
Query:   10 KKTKEDKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 453
            +K KE K EE VTLGPKV EGE+VFGVAHIFASFNDTF+H+TDLSGRET+VR+TGGMKVKADRDE+SPYAAMLAAQDVA RCKELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GMKIGRIEDVTPIPTD TRRKGGRRGRRL
Sbjct:   45 RKAKETK-EETVTLGPKVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 191
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BLAST of mRNA_Ecto-sp9_F_contig996.18024.1 vs.
Match: (wild (Malaysian banana) hypothetical protein n=2 Tax=Petrosaviidae TaxID=1437197 RepID=A0A804IE59_MUSAM)

HSP 1 Score: 256 bits (654), Expect = 6.810e-84
Identity = 131/148 (88.51%), Postives = 140/148 (94.59%), Query Frame = 1 
Query:   10 KKTKEDKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 453
            KKT+E K E+ VTLGP V EGE VFGVAHIFASFNDTF+H+TDLSGRET+VR+TGGMKVKADRDE+SPYAAMLAAQDVA RCKELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GMKIGRIEDVTPIPTD TRRKGGRRGRRL
Sbjct:    5 KKTREPK-EDNVTLGPAVREGEQVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 151
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BLAST of mRNA_Ecto-sp9_F_contig996.18024.1 vs.
Match: 40S (ribosomal protein S14 n=1 Tax=Sycon ciliatum TaxID=27933 RepID=M1XK24_9METZ)

HSP 1 Score: 256 bits (654), Expect = 7.540e-84
Identity = 130/148 (87.84%), Postives = 139/148 (93.92%), Query Frame = 1 
Query:   10 KKTKEDKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 453
            +K KE K EE + LGP+V EGENVFGVAHIFASFNDTFVHITDLSG+ET+ RVTGGMKVKADRDEASPYAAMLAAQDVA RCKE+GITALHIK+RATGGN+TKTPGPGAQSALRALARAGMKIGRIEDVTPIP+D TRRKGGRRGRRL
Sbjct:    7 RKGKEAKKEENIVLGPQVGEGENVFGVAHIFASFNDTFVHITDLSGKETITRVTGGMKVKADRDEASPYAAMLAAQDVAVRCKEVGITALHIKLRATGGNRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 154
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BLAST of mRNA_Ecto-sp9_F_contig996.18024.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HU48_9STRA)

HSP 1 Score: 256 bits (655), Expect = 8.830e-84
Identity = 129/147 (87.76%), Postives = 139/147 (94.56%), Query Frame = 1 
Query:   13 KTKEDKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 453
            K  E  VEE  T+G KVA+GEN+FGVAHIFASFNDTFVH+TDLSGRET+VRVTGGMKVKADRDEASPYAAMLAAQDVAA+CK++GITALHIKMRATGGNKTKTPGPGAQSALRALARAG+KIGRIEDVTPIP+DCTRRK GRRGRRL
Sbjct:   23 KDAEQPVEEMTTIGAKVADGENLFGVAHIFASFNDTFVHVTDLSGRETIVRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKDIGITALHIKMRATGGNKTKTPGPGAQSALRALARAGLKIGRIEDVTPIPSDCTRRKSGRRGRRL 169
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BLAST of mRNA_Ecto-sp9_F_contig996.18024.1 vs.
Match: 40S (ribosomal protein S14-like n=10 Tax=Mesangiospermae TaxID=1437183 RepID=A0A1U8B504_NELNU)

HSP 1 Score: 256 bits (653), Expect = 9.350e-84
Identity = 127/140 (90.71%), Postives = 135/140 (96.43%), Query Frame = 1 
Query:   34 EERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 453
            EE VTLGP V EGENVFGVAHIFASFNDTF+H+TDLSGRET+VR+TGGMKVKADRDE+SPYAAMLAAQDVA RCKELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GMK+GRIEDVTPIPTD TRRKGGRRGRRL
Sbjct:   11 EENVTLGPTVREGENVFGVAHIFASFNDTFIHVTDLSGRETIVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKVGRIEDVTPIPTDSTRRKGGRRGRRL 150
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BLAST of mRNA_Ecto-sp9_F_contig996.18024.1 vs.
Match: Ribosomal (protein S14 n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4Q5K9_EPTBU)

HSP 1 Score: 256 bits (653), Expect = 9.670e-84
Identity = 128/150 (85.33%), Postives = 142/150 (94.67%), Query Frame = 1 
Query:    4 ADKKTKEDKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 453
            A +K KE K E+ ++LGP+V EGENVFGVAHIFASFNDTFVH+TDLSG+ET+ RVTGGMKVKADRDE+SPYAAMLAAQDVAARCKELGITALH+++RATGGN+TKTPGPGAQSALRALAR+GMKIGRIEDVTPIPTD TRRKGGRRGRRL
Sbjct:    2 APRKGKEKKEEQMISLGPQVTEGENVFGVAHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHVRLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 151
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BLAST of mRNA_Ecto-sp9_F_contig996.18024.1 vs.
Match: Uncharacterized (protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5HUD3_ZINOF)

HSP 1 Score: 258 bits (659), Expect = 9.950e-84
Identity = 132/148 (89.19%), Postives = 140/148 (94.59%), Query Frame = 1 
Query:   10 KKTKEDKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 453
            KKT+E K EE VTLGP V EGE VFGVAHIFASFNDTF+H+TDLSGRET+VR+TGGMKVKADRDE+SPYAAMLAAQDVA RCKELGITALHIK+RATGGNKTKTPGPGAQSALRALARAGMK+GRIEDVTPIPTD TRRKGGRRGRRL
Sbjct:   68 KKTREPK-EENVTLGPTVREGEQVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARAGMKVGRIEDVTPIPTDSTRRKGGRRGRRL 214
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig996.18024.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
40S1.400e-97100.00ribosomal protein S14 n=3 Tax=Sar TaxID=2698737 Re... [more]
Uncharacterized1.680e-8489.86protein n=7 Tax=Magnoliopsida TaxID=3398 RepID=K3Y... [more]
Uncharacterized4.800e-8488.51protein n=8 Tax=Magnoliopsida TaxID=3398 RepID=W1P... [more]
Uncharacterized6.510e-8489.19protein n=1 Tax=Vanilla planifolia TaxID=51239 Rep... [more]
(wild6.810e-8488.51Malaysian banana) hypothetical protein n=2 Tax=Pet... [more]
40S7.540e-8487.84ribosomal protein S14 n=1 Tax=Sycon ciliatum TaxID... [more]
Hypothetical8.830e-8487.76protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
40S9.350e-8490.71ribosomal protein S14-like n=10 Tax=Mesangiosperma... [more]
Ribosomal9.670e-8485.33protein S14 n=1 Tax=Eptatretus burgeri TaxID=7764 ... [more]
Uncharacterized9.950e-8489.19protein n=1 Tax=Zingiber officinale TaxID=94328 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig996contigEcto-sp9_F_contig996:10450..13402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.5
Seed ortholog evalue2.4e-47
Seed eggNOG ortholog2880.D7FYS4
Preferred nameRPS14
KEGG rclassRC00002,RC02753
KEGG koko:K01000,ko:K02955
KEGG TC9.B.146
KEGG ReactionR05629,R05630
KEGG Pathwayko00550,ko01100,ko01502,ko03010,map00550,map01100,map01502,map03010
KEGG ModuleM00177
GOsGO:0000028,GO:0000122,GO:0000184,GO:0000462,GO:0000956,GO:0002181,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030490,GO:0030684,GO:0030686,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032040,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034101,GO:0034248,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0042592,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045182,GO:0045184,GO:0045892,GO:0045934,GO:0046483,GO:0046700,GO:0046907,GO:0048027,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051252,GO:0051253,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070181,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.mRNA 5'-UTR binding
EggNOG OGsCOG0100@1,KOG0407@2759
EC2.7.8.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01011,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein S11
Ec32 orthologEc-19_002330.1
Exons4
Model size775
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig996.18024.1prot_Ecto-sp9_F_contig996.18024.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig996 11327..13083 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931092.5984755-UTR-Ecto-sp9_F_contig996:10449..105751622931092.5984755-UTR-Ecto-sp9_F_contig996:10449..10575Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig996 10450..10575 +
1692279029.74904-UTR-Ecto-sp9_F_contig996:10449..105751692279029.74904-UTR-Ecto-sp9_F_contig996:10449..10575Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig996 10450..10575 +
1622931092.6202164-UTR-Ecto-sp9_F_contig996:11296..113261622931092.6202164-UTR-Ecto-sp9_F_contig996:11296..11326Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig996 11297..11326 +
1692279029.7610817-UTR-Ecto-sp9_F_contig996:11296..113261692279029.7610817-UTR-Ecto-sp9_F_contig996:11296..11326Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig996 11297..11326 +
1622931092.6854575-UTR-Ecto-sp9_F_contig996:13083..134021622931092.6854575-UTR-Ecto-sp9_F_contig996:13083..13402Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig996 13084..13402 +
1692279029.8018396-UTR-Ecto-sp9_F_contig996:13083..134021692279029.8018396-UTR-Ecto-sp9_F_contig996:13083..13402Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig996 13084..13402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931092.6340244-CDS-Ecto-sp9_F_contig996:11326..114281622931092.6340244-CDS-Ecto-sp9_F_contig996:11326..11428Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig996 11327..11428 +
1692279029.770448-CDS-Ecto-sp9_F_contig996:11326..114281692279029.770448-CDS-Ecto-sp9_F_contig996:11326..11428Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig996 11327..11428 +
1622931092.6466455-CDS-Ecto-sp9_F_contig996:12428..125451622931092.6466455-CDS-Ecto-sp9_F_contig996:12428..12545Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig996 12429..12545 +
1692279029.7795298-CDS-Ecto-sp9_F_contig996:12428..125451692279029.7795298-CDS-Ecto-sp9_F_contig996:12428..12545Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig996 12429..12545 +
1622931092.6639252-CDS-Ecto-sp9_F_contig996:13002..130831622931092.6639252-CDS-Ecto-sp9_F_contig996:13002..13083Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig996 13003..13083 +
1692279029.7889802-CDS-Ecto-sp9_F_contig996:13002..130831692279029.7889802-CDS-Ecto-sp9_F_contig996:13002..13083Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig996 13003..13083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig996.18024.1

>prot_Ecto-sp9_F_contig996.18024.1 ID=prot_Ecto-sp9_F_contig996.18024.1|Name=mRNA_Ecto-sp9_F_contig996.18024.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=100bp
MVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGG
NKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL*
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mRNA from alignment at Ecto-sp9_F_contig996:10450..13402+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig996.18024.1 ID=mRNA_Ecto-sp9_F_contig996.18024.1|Name=mRNA_Ecto-sp9_F_contig996.18024.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2953bp|location=Sequence derived from alignment at Ecto-sp9_F_contig996:10450..13402+ (Ectocarpus species9 EcSCA_722f female)
CAGGCGGACAAGAAGACGAAGGAGGACAAGGTGGAGGAGAGGGTTACCCT
CGGCCCCAAGGTGGCGGAGGGAGAGAACGTCTTCGGCGTCGCGCACATCT
TCGCCTCGTTCAACGACACCTTCGTTGTGAGTACATATTAAAATAGTTGT
CTGTCAGGACTGGTCATGCAAACAGTAGCTGAAAATATGAAAAATGCGTA
CTCAACAGCTTGACAAACTCGGCAGCGTTGAGCGTCTATCGATTTTGAAG
GCGATTCGAACGATGTTCAGCAGCATGGATACGTTCAGTCCGTCCTTCGC
TCCGTAAACGATACTGTCGCAGAAAGCAGTTGCCACGCCGTAGCTCGGGC
TAGTCTAGGAAGTGAGACCCACGGGATATATCCTTTTTTGGGACAGCGCG
GGTGTGGCATCTTACTAAGTTTGCACGTGATGCTCTATCCGCCCCCGCGT
ACCTGAAGAAGAGATTGCCCGGTCGAACCTAAATATCCTGGTTTCGTGGC
TCACACAAGGCCGTTAGACTCTGCGCTACTGGGCTGATCGCGTGTGTCAT
GATGCAGTGCTTGTATCCAATGCCATTGCCTGGTTTTCGGGGTTGTTGTT
CGTCTCCTGTCAGTATCCGGTACCACTTTCCCTCATATCCCGTTGTTGCA
GAAATCGGAGCACATGCTCCGTTAAAGACCATTACATCTCTTTGTTGTGC
TCCTCCAGATGACCACAAGTGTACGCTTGAAACGTCGGACACTCTGGTGT
TGTGTTTGGCCTTCTAAAACCCTCCTCCCCTGTCCACCCCCCTCGGCGGT
CCTCTTTCTTCCCGTCCCCTTTGTTGGACACGTACCGTAACGTGCAGCAC
ATCACGGATCTGTCGGGGAGGGAAACCATGGTCCGCGTGACCGGCGGCAT
GAAGGTCAAGGCTGACCGCGATGAGGCTTCCCCTTACGCGGCCATGCTTG
CCGCACAGGACGTGGCTGCCCGCTGCAAGGTGAGCAGCTTGTTTCTCGTT
TACCTTGTTCCAGCTACTGTGGTGCCCGAGGTGTGGGTACGTAGTATGAG
TATGACGTTTTCGTATTCTACACAGGAGCACCTTTGGAGGGTTGTGTGCC
CACGGTTACATTTTGGTGCTTGCACAGTTTGGAATACATGATTTCATGAG
CAGCAAATAAAGTTGCCGCGACTACGCGAACGAGGATTTCAACCTCACGC
GTGCTCGGGACCATCAAACCGATGCATCTATTCGATATTACGTCGCTGTG
CGCTCGTGCGGGCGCTGTCAGCAGTCGTGCTGTGCGAAACCCCGTATGGC
CAGTTTAACGATCGTGAGCGTTTCTGCGCGCGTGCCCTGCACGTGGCGCG
TTGCACACAACGTGTGAATATCCAGGCTCTACGCTATTCTGTTGCGCTAT
TCTGTTGCAAGCCCGTTTGTTCATTTCGGGTAGCTCGACGCGCTCTTAAG
TATTTTTCGCGATTTATCTTTCGCTCAATCAGGGTTTGCGATTGTTTGCA
TTCCTTGAAAGTCATATATTCCCGTCTAGAGGAATCTCGTTCATGACGCC
CTTCGTTGGTTGCATGTTGGTGGTGCCCCAAACGGTTCCGTCAGCCGCGA
GTGGGTCAATGACGGCCTGCTGTGATAAAACGTTGATTGGTTGGTGTGAT
AAAGCGTTGATTCGTTGGAGGCCTCAGCTAGAGCTTTACTTGTGCCCGCT
TCTGCTCCTTTTCCTCTCGTATCCCATGTTATGCACAGCGACCCAAAACT
ACAGTTTAACTCATCCATGCAGCACCTCAACCTACGCCGTGCCTATCGCG
TTTGCACGAGTACATAGAGCCCCCCCCACCCCGCCGCCCATCTGAGATGT
CATTACTTGACAAGTCCAAGGTCACGGTGAGATTTGTTGGGCACGGACGA
TGCCAGAACCAATCACGGCACGACCCACACGCTGGTGCTTTTCCTTTCTG
CTGCTTGGGTTTGTGTGCGTGGCCTGCAGGAGCTGGGCATCACCGCCCTG
CACATCAAGATGCGCGCCACCGGCGGCAACAAGACCAAGACCCCCGGCCC
CGGCGCACAGTCGGCCCTCCGCGCTCTTGCTCGCGCAGGAATGAAGGTGA
CGGCACACACAGCGCTCGCGAGAAAACATGCGATAGTTCCTTTTGACCTT
CGTTAGCGTAGAGCAGATTTTCACGTCTTGCGACGCCGTTGTTTTGTCGT
GTGAAGTGGTATTCCGTATTGCAACGTCTAGCAGAGGTCTACATCGTTTT
ATTCGGGCCAGTGTCTCTTGCATATTTTTTCCTCGCGGTCCTTGGTTTTG
CCTCACTCATCACAAAAGCTCCCACCCCATTTGTGGATGGCAACCGCATT
AGCCCGACAAAGTTTCACGGCCGGGAGCAGCTCATCACGAAGCTAGTAGA
GGGAAACAAGGTGCCAAAGGTGGCAAAAAAAATGTCGATGGTTTTTCTTG
CAGCAACACCCCTAACATTCTTGTTCGCGTGGTGTCTGACCGTTCCTCTC
ACGCCGCCCACCCCCGCCGGTCGCGCTCGCGCATTGTTGCAATTCCGATC
CAGATCGGCCGCATCGAAGATGTCACCCCGATCCCTACTGACTGCACCCG
CCGGAAGGGCGGACGCCGTGGTCGCCGTCTGTAAGGCCATCGAAACGACA
GTTTCAGAATTGTCTCGAGAAGGACATGGACATGGACATCGTGTTTCACC
TTACCACGAGCGCCCTTCCGCGCTTGTGCTTGCTAGCCAAAGTTTGCATG
AGGTTGGTGGCGTAAATCGCCAGCAGTTGGTTCTGCTTGGGCTTTGCTGG
TAGGGTGTTACACGGCGGGTACGTTGTCTATCGTAGCCGTTGGCCGTGGT
GTTTTAGGCCGTGTGCTTGCTTGCTTGCGTTCGGGTTCCGATTACATTTA
GGCTACTAGGAGAGTCAGCCATCTCCGCGCGAGGCTAATAAAAATGAAGG
AGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig996:10450..13402+

>mRNA_Ecto-sp9_F_contig996.18024.1 ID=mRNA_Ecto-sp9_F_contig996.18024.1|Name=mRNA_Ecto-sp9_F_contig996.18024.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp9_F_contig996:10450..13402+ (Ectocarpus species9 EcSCA_722f female)
ATGGTCCGCGTGACCGGCGGCATGAAGGTCAAGGCTGACCGCGATGAGGC
TTCCCCTTACGCGGCCATGCTTGCCGCACAGGACGTGGCTGCCCGCTGCA
AGATGGTCCGCGTGACCGGCGGCATGAAGGTCAAGGCTGACCGCGATGAG
GCTTCCCCTTACGCGGCCATGCTTGCCGCACAGGACGTGGCTGCCCGCTG
CAAGGAGCTGGGCATCACCGCCCTGCACATCAAGATGCGCGCCACCGGCG
GCAACAAGACCAAGACCCCCGGCCCCGGCGCACAGTCGGCCCTCCGCGCT
CTTGCTCGCGCAGGAATGAAGGAGCTGGGCATCACCGCCCTGCACATCAA
GATGCGCGCCACCGGCGGCAACAAGACCAAGACCCCCGGCCCCGGCGCAC
AGTCGGCCCTCCGCGCTCTTGCTCGCGCAGGAATGAAGATCGGCCGCATC
GAAGATGTCACCCCGATCCCTACTGACTGCACCCGCCGGAAGGGCGGACG
CCGTGGTCGCCGTCTGTAAATCGGCCGCATCGAAGATGTCACCCCGATCC
CTACTGACTGCACCCGCCGGAAGGGCGGACGCCGTGGTCGCCGTCTGTAA
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