mRNA_Ecto-sp9_F_contig9958.18021.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9958.18021.1
Unique NamemRNA_Ecto-sp9_F_contig9958.18021.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9958.18021.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYK9_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 1.370e-49
Identity = 153/179 (85.47%), Postives = 155/179 (86.59%), Query Frame = 1 
Query: 1051 PVSETXXVAPTPVIPTLLPVATPPEPPAASDSLQPVVAPPTASATVTNAPVDAAQPVAPGTIQXXXXXXXVXPAAAPTALAPSAEPVIGVQPSVSPVAAPSATIGQDPTVDPIAVVPSPPXXXXXXXXXXXXXXXXXXTVTITTSPAAVPGAPTAEPALAPVVPLPPGQTAAPAARDLP 1587
            PVSETXX      IPTLLPVATPPEPPAASDSLQPVVAPPTAS  +TNAPVDAAQPVAPGT  XXXXXXX XPA APTALAPSAEPVIGVQPSV PVAAPSATIGQ+PTVDPIAVVPSPPXXXXXXXXXXXXXXXXXX  TITTSPAAVPGAPTAEPALAP         AAPAARDLP
Sbjct: 1107 PVSETXXXXXXXXIPTLLPVATPPEPPAASDSLQPVVAPPTASGALTNAPVDAAQPVAPGTTXXXXXXXXXXPATAPTALAPSAEPVIGVQPSVPPVAAPSATIGQEPTVDPIAVVPSPPXXXXXXXXXXXXXXXXXXXXTITTSPAAVPGAPTAEPALAPXXXXXXXXXAAPAARDLP 1285
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BLAST of mRNA_Ecto-sp9_F_contig9958.18021.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG77_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.680e-21
Identity = 106/145 (73.10%), Postives = 106/145 (73.10%), Query Frame = 1 
Query: 1153 PVVAPPTASATVTNAPVDAAQPVAPGTIQXXXXXXXVXPAAAPTALAPSAEPVIGVQPSVSPVAAPSATIGQDPTVDPIAVVPSPPXXXXXXXXXXXXXXXXXXTVTITTSPAAVPGAPTAEPALAPVVPLPPGQTAAPAARDLP 1587
            PVVAP TASA VTNAPVDAAQPVAPGTI  XXXXX V  A APTAL                    SA IGQDPTVDPIAVVPSPPXXXXXXXXXXXXXXXXXXT TIT SPAAVPGAPTAEPALAP        TAAPAARDLP
Sbjct:  646 PVVAP-TASAAVTNAPVDAAQPVAPGTIPPXXXXXTVPXATAPTALXXXXXXXXXXXXXXXXXXXXSAAIGQDPTVDPIAVVPSPPXXXXXXXXXXXXXXXXXXTTTITNSPAAVPGAPTAEPALAPXXXXXXXXTAAPAARDLP 789
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9958.18021.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.370e-4985.47protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.680e-2173.10protein (Fragment) n=1 Tax=Ectocarpus siliculosus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9958contigEcto-sp9_F_contig9958:1535..4003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue2.8e-22
Seed eggNOG ortholog2880.D8LG77
EggNOG OGs2D0P0@1,2SEV1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_004020.2
Exons4
Model size1588
Cds size1587
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9958.18021.1prot_Ecto-sp9_F_contig9958.18021.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9958 1535..4003 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931092.1639023-CDS-Ecto-sp9_F_contig9958:1534..23151622931092.1639023-CDS-Ecto-sp9_F_contig9958:1534..2315Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9958 1535..2315 +
1692279029.5224195-CDS-Ecto-sp9_F_contig9958:1534..23151692279029.5224195-CDS-Ecto-sp9_F_contig9958:1534..2315Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9958 1535..2315 +
1622931092.1797154-CDS-Ecto-sp9_F_contig9958:2441..29501622931092.1797154-CDS-Ecto-sp9_F_contig9958:2441..2950Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9958 2442..2950 +
1692279029.5343263-CDS-Ecto-sp9_F_contig9958:2441..29501692279029.5343263-CDS-Ecto-sp9_F_contig9958:2441..2950Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9958 2442..2950 +
1622931092.1990469-CDS-Ecto-sp9_F_contig9958:3378..34271622931092.1990469-CDS-Ecto-sp9_F_contig9958:3378..3427Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9958 3379..3427 +
1692279029.5453484-CDS-Ecto-sp9_F_contig9958:3378..34271692279029.5453484-CDS-Ecto-sp9_F_contig9958:3378..3427Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9958 3379..3427 +
1622931092.2194686-CDS-Ecto-sp9_F_contig9958:3755..40031622931092.2194686-CDS-Ecto-sp9_F_contig9958:3755..4003Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9958 3756..4003 +
1692279029.5556834-CDS-Ecto-sp9_F_contig9958:3755..40031692279029.5556834-CDS-Ecto-sp9_F_contig9958:3755..4003Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9958 3756..4003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9958.18021.1

>prot_Ecto-sp9_F_contig9958.18021.1 ID=prot_Ecto-sp9_F_contig9958.18021.1|Name=mRNA_Ecto-sp9_F_contig9958.18021.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=529bp
ATATTQPATAPTPTLTAPPATGTTQPVSAPTPTVTAPPATATTQPATAPT
PTLTAPPATGTSPPATAPVTAPTPTATAPPATATAQPVTAPTPTATAPPA
TATTPPVTAPTPTATAPPAAATTQPVAAPVTAPTPTVTTPPATGTTQPVS
APTPAVTAPPATATTQPATAPTPTVTAPPATGTTQPVSAPTPTATAPPAT
GTTQPVSAPTPTATAPTPTVTAPPATGTTQPVTAPSPTVTTPPATGTTQP
ATAPDTAPTPAVTTPPATGTTQPVTAPTPTGTTPPATGTEPPAVAPTPVT
APTARGTSPPATTPVTAPPATGTTPPATAPTQPVTAPPVTGTSPPASAPT
PVSETPAVAPTPVIPTLLPVATPPEPPAASDSLQPVVAPPTASATVTNAP
VDAAQPVAPGTIQPVAPGTTVPPAAAPTALAPSAEPVIGVQPSVSPVAAP
SATIGQDPTVDPIAVVPSPPPAAVVPSPPPAPVVGAPPTVTITTSPAAVP
GAPTAEPALAPVVPLPPGQTAAPAARDLP
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mRNA from alignment at Ecto-sp9_F_contig9958:1535..4003+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9958.18021.1 ID=mRNA_Ecto-sp9_F_contig9958.18021.1|Name=mRNA_Ecto-sp9_F_contig9958.18021.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2469bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9958:1535..4003+ (Ectocarpus species9 EcSCA_722f female)
GCCACGGCAACAACACAACCGGCTACGGCACCAACTCCGACACTTACGGC
ACCCCCTGCCACGGGGACAACACAACCGGTTTCGGCTCCAACTCCAACAG
TTACGGCCCCCCCTGCCACGGCAACAACACAACCGGCTACGGCACCAACT
CCGACACTTACGGCACCCCCTGCCACGGGGACATCGCCACCGGCAACGGC
ACCAGTTACGGCACCGACTCCAACAGCTACGGCGCCCCCTGCCACGGCAA
CAGCACAACCGGTTACGGCACCAACTCCGACAGCTACGGCGCCCCCTGCC
ACGGCAACAACACCACCGGTTACGGCACCAACTCCGACAGCTACGGCGCC
CCCTGCCGCGGCAACAACACAACCGGTTGCGGCACCAGTGACGGCACCAA
CGCCAACGGTTACCACCCCTCCCGCTACAGGGACAACACAACCGGTTTCG
GCACCAACTCCGGCAGTTACGGCACCCCCTGCCACGGCAACAACACAACC
GGCTACGGCACCAACTCCGACAGTTACGGCACCCCCTGCCACGGGGACAA
CACAACCGGTTTCGGCACCAACTCCGACAGCTACGGCACCCCCTGCCACG
GGGACAACACAACCGGTTTCGGCACCAACTCCGACAGCTACGGCACCAAC
TCCGACAGTTACGGCACCCCCTGCCACGGGGACGACACAACCGGTTACGG
CACCATCGCCAACCGTTACCACCCCTCCCGCTACAGGGACAACTCAACCG
GCAACGGCACCAGATACGGCACCAACGCCAGCCGTCACCACCCCTCCCGC
TACAGGGACAACACAACCGGTTACGGCACCAACGCCAACCGGGACCACCC
CTCCCGCTACAGGGACAACTCAACCGGCAACGGCACCAGATACGGCACCA
ACGCCAACCGTCACCACCCCTCCCGCTACAGGGACAACACAACCGGTTAC
GGCACCAACGCCAACCGGGACCACCCCTCCCGCTACAGGGACAGAGCCAC
CGGCTGTGGCACCAACCCCTGTAACCGCACCCACCGCCAGGGGGACATCT
CCACCAGCTACGACACCAGTTACTGCCCCTCCCGCTACTGGGACAACGCC
ACCGGCTACGGCGCCAACTCAACCAGTAACCGCCCCCCCCGTCACGGGGA
CGTCGCCACCGGCTTCGGCACCAACGCCTGTATCCGAAACCCCCGCTGTT
GCCCCGACCCCAGTAATCCCGACCCTGTTGCCTGTCGCAACACCTCCTGA
ACCTCCCGCTGCTTCCGATTCGCTGCAGCCTGTTGTGGCGCCACCTACGG
CTTCTGCGACGGTGACCAATGCGCCTGTGGATGCGGCCCAGCCAGTGGCA
CCGGGGACGATCCAGCCAGTGGCACCGGGGACAACGGTTCCCCCTGCCGC
GGCTCCGACCGCGCTGGTGTGTGTGTGTGTGTTTTTTTTGTTTTCTATTA
CACCGTTCCTTTGATTTCTAGCGAGGTGTGCCGCCTCTTGTTGGTTTTAT
TCTACGGGTGTCTGAAGACAGTGAGCGGAGACCATTTGTTTACCGTGCGG
CAACAACCCTGTCAAGTATCGATCGTGTTGTTTATTGTCCCGAAACAAAT
GGGTGGCTCTGGTGGCGGTGTTGGGTATGTTTTGTTTGGTTTTGCTTGTG
AGAGGTGCGCCGACACTGAGTACGATACGCACGGATATGATGACGTTGGG
CTTGTGTCATGACCTTGTTGGTTTGTTGCTGCACGACTAGATTGTGGCAG
GAACTCATGTACGGGATCTCTGTCGTTTACCTCAAATGTCTCGCACCGCC
CTGGTGCTGCGCATTCTGGGTGTTTTTCGGCTGTATTGTTTCAGGCGCCG
AGTGCTGAGCCTGTGATTGGGGTACAGCCGAGCGTCTCTCCAGGTAAGCA
GGAGAAAGAAGGGTGTCATCGCTCGTTTGTTTTTTTCAGGTGTCGCCACT
TTTTCATGAACGCTTGGTATGCATCCTGTTTTTCTTGGACGCTGTCTGCG
AAAAGGCAGATTCGAGCACACGCACGGTCCGTGGCGTGTTGTTTTACTTG
CGTTGGCCGCCACATCCTTCCCACCGCTATCTCTTGAGTAGGCCGCTGCG
TCCTTCGCCACCCCTTCGATCCTAGCGTTCTATCTTGGTACCGACAAGTC
TGCCGACTCGCGAGAAGGTTTTGACTTGTGGTTTTTCCCGCCCTCCTCCG
CCGCCTCCCGCCCGCTCGAAGTCGCCGCTCCCTCAGCAACAATCGGACAG
GACCCTACCGTGGACCCGATAGCCGTGGTGCCTTCGCCGCCACCGGCCGC
CGTGGTTCCCTCGCCCCCGCCGGCCCCTGTGGTCGGCGCGCCGCCTACGG
TTACGATTACCACATCACCCGCCGCGGTGCCGGGGGCGCCCACGGCCGAG
CCGGCGCTAGCACCGGTGGTGCCCCTCCCCCCCGGACAGACCGCCGCCCC
CGCCGCCAGGGACCTGCCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9958:1535..4003+

>mRNA_Ecto-sp9_F_contig9958.18021.1 ID=mRNA_Ecto-sp9_F_contig9958.18021.1|Name=mRNA_Ecto-sp9_F_contig9958.18021.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3174bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9958:1535..4003+ (Ectocarpus species9 EcSCA_722f female)
GCCACGGCAACAACACAACCGGCTACGGCACCAACTCCGACACTTACGGC
ACCCCCTGCCACGGGGACAACACAACCGGTTTCGGCTCCAACTCCAACAG
TTACGGCCCCCCCTGCCACGGCAACAACACAACCGGCTACGGCACCAACT
CCGACACTTACGGCACCCCCTGCCACGGGGACATCGCCACCGGCAACGGC
ACCAGTTACGGCACCGACTCCAACAGCTACGGCGCCCCCTGCCACGGCAA
CAGCACAACCGGTTACGGCACCAACTCCGACAGCTACGGCGCCCCCTGCC
ACGGCAACAACACCACCGGTTACGGCACCAACTCCGACAGCTACGGCGCC
CCCTGCCGCGGCAACAACACAACCGGTTGCGGCACCAGTGACGGCACCAA
CGCCAACGGTTACCACCCCTCCCGCTACAGGGACAACACAACCGGTTTCG
GCACCAACTCCGGCAGTTACGGCACCCCCTGCCACGGCAACAACACAACC
GGCTACGGCACCAACTCCGACAGTTACGGCACCCCCTGCCACGGGGACAA
CACAACCGGTTTCGGCACCAACTCCGACAGCTACGGCACCCCCTGCCACG
GGGACAACACAACCGGTTTCGGCACCAACTCCGACAGCTACGGCACCAAC
TCCGACAGTTACGGCACCCCCTGCCACGGGGACGACACAACCGGTTACGG
CACCATCGCCAACCGTTACCACCCCTCCCGCTACAGGGACAACTCAACCG
GCAACGGCACCAGATACGGCACCAACGCCAGGCCACGGCAACAACACAAC
CGGCTACGGCACCAACTCCGACACTTACGGCACCCCCTGCCACGGGGACA
ACACAACCGGTTTCGGCTCCAACTCCAACAGTTACGGCCCCCCCTGCCAC
GGCAACAACACAACCGGCTACGGCACCAACTCCGACACTTACGGCACCCC
CTGCCACGGGGACATCGCCACCGGCAACGGCACCAGTTACGGCACCGACT
CCAACAGCTACGGCGCCCCCTGCCACGGCAACAGCACAACCGGTTACGGC
ACCAACTCCGACAGCTACGGCGCCCCCTGCCACGGCAACAACACCACCGG
TTACGGCACCAACTCCGACAGCTACGGCGCCCCCTGCCGCGGCAACAACA
CAACCGGTTGCGGCACCAGTGACGGCACCAACGCCAACGGTTACCACCCC
TCCCGCTACAGGGACAACACAACCGGTTTCGGCACCAACTCCGGCAGTTA
CGGCACCCCCTGCCACGGCAACAACACAACCGGCTACGGCACCAACTCCG
ACAGTTACGGCACCCCCTGCCACGGGGACAACACAACCGGTTTCGGCACC
AACTCCGACAGCTACGGCACCCCCTGCCACGGGGACAACACAACCGGTTT
CGGCACCAACTCCGACAGCTACGGCACCAACTCCGACAGTTACGGCACCC
CCTGCCACGGGGACGACACAACCGGTTACGGCACCATCGCCAACCGTTAC
CACCCCTCCCGCTACAGGGACAACTCAACCGGCAACGGCACCAGATACGG
CACCAACGCCAGCCGTCACCACCCCTCCCGCTACAGGGACAACACAACCG
GTTACGGCACCAACGCCAACCGGGACCACCCCTCCCGCTACAGGGACAGA
GCCACCGGCTGTGGCACCAACCCCTGTAACCGCACCCACCGCCAGGGGGA
CATCTCCACCAGCTACGACACCAGTTACTGCCCCTCCCGCTACTGGGACA
ACGCCACCGGCTACGGCGCCAACTCAACCAGTAACCGCCCCCCCCGTCAC
GGGGACGTCGCCACCGGCTTCGGCACCAACGCCTGTATCCGAAACCCCCG
CTGTTGCCCCGACCCCAGTAATCCCGACCCTGTTGCCTGTCGCAACACCT
CCTGAACCTCCCGCTGCTTCCGATTCGCTGCAGCCTGTTGTGGCGCCACC
TACGGCTTCTGCGACGGTGACCAATGCGCCTGTGGATGCGGCCCAGCCAG
TGGCACCGGGGACGATCCAGCCAGTGGCACCGGGGACAACGGTTCCCCCT
GCCGCGGCTCCGACCGCGCTGCCGTCACCACCCCTCCCGCTACAGGGACA
ACACAACCGGTTACGGCACCAACGCCAACCGGGACCACCCCTCCCGCTAC
AGGGACAGAGCCACCGGCTGTGGCACCAACCCCTGTAACCGCACCCACCG
CCAGGGGGACATCTCCACCAGCTACGACACCAGTTACTGCCCCTCCCGCT
ACTGGGACAACGCCACCGGCTACGGCGCCAACTCAACCAGTAACCGCCCC
CCCCGTCACGGGGACGTCGCCACCGGCTTCGGCACCAACGCCTGTATCCG
AAACCCCCGCTGTTGCCCCGACCCCAGTAATCCCGACCCTGTTGCCTGTC
GCAACACCTCCTGAACCTCCCGCTGCTTCCGATTCGCTGCAGCCTGTTGT
GGCGCCACCTACGGCTTCTGCGACGGTGACCAATGCGCCTGTGGATGCGG
CCCAGCCAGTGGCACCGGGGACGATCCAGCCAGTGGCACCGGGGACAACG
GTTCCCCCTGCCGCGGCTCCGACCGCGCTGGCGCCGAGTGCTGAGCCTGT
GATTGGGGTACAGCCGAGCGTCTCTCCAGGCGCCGAGTGCTGAGCCTGTG
ATTGGGGTACAGCCGAGCGTCTCTCCAGTCGCCGCTCCCTCAGCAACAAT
CGGACAGGACCCTACCGTGGACCCGATAGCCGTGGTGCCTTCGCCGCCAC
CGGCCGCCGTGGTTCCCTCGCCCCCGCCGGCCCCTGTGGTCGGCGCGCCG
CCTACGGTTACGATTACCACATCACCCGCCGCGGTGCCGGGGGCGCCCAC
GGCCGAGCCGGCGCTAGCACCGGTGGTGCCCCTCCCCCCCGGACAGACCG
CCGCCCCCGCCGCCAGGGACCTGCCCTCGCCGCTCCCTCAGCAACAATCG
GACAGGACCCTACCGTGGACCCGATAGCCGTGGTGCCTTCGCCGCCACCG
GCCGCCGTGGTTCCCTCGCCCCCGCCGGCCCCTGTGGTCGGCGCGCCGCC
TACGGTTACGATTACCACATCACCCGCCGCGGTGCCGGGGGCGCCCACGG
CCGAGCCGGCGCTAGCACCGGTGGTGCCCCTCCCCCCCGGACAGACCGCC
GCCCCCGCCGCCAGGGACCTGCCC
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