mRNA_Ecto-sp9_F_contig9953.18019.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9953.18019.1
Unique NamemRNA_Ecto-sp9_F_contig9953.18019.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9953.18019.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMH9_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.160e-22
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 2 
Query:    2 ARLPFLRDRETIVQDLAAKMRARKEALEEERAALEPTTKGGKTKQATKGKPGKK 163
            ARLPFLRDRETIVQDL AKMRARKEA+EEERAALEPTTKGGKTKQATKGKPGKK
Sbjct:  187 ARLPFLRDRETIVQDLIAKMRARKEAVEEERAALEPTTKGGKTKQATKGKPGKK 240
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9953.18019.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.160e-2296.30protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9953contigEcto-sp9_F_contig9953:1462..2604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size363
Cds size261
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9953.18019.1prot_Ecto-sp9_F_contig9953.18019.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9953 1564..2604 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931091.9903383-UTR-Ecto-sp9_F_contig9953:1461..15631622931091.9903383-UTR-Ecto-sp9_F_contig9953:1461..1563Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9953 1462..1563 -
1692279029.4589353-UTR-Ecto-sp9_F_contig9953:1461..15631692279029.4589353-UTR-Ecto-sp9_F_contig9953:1461..1563Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9953 1462..1563 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931092.014422-CDS-Ecto-sp9_F_contig9953:1563..17661622931092.014422-CDS-Ecto-sp9_F_contig9953:1563..1766Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9953 1564..1766 -
1692279029.470088-CDS-Ecto-sp9_F_contig9953:1563..17661692279029.470088-CDS-Ecto-sp9_F_contig9953:1563..1766Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9953 1564..1766 -
1622931092.0331953-CDS-Ecto-sp9_F_contig9953:2546..26041622931092.0331953-CDS-Ecto-sp9_F_contig9953:2546..2604Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9953 2547..2604 -
1692279029.480824-CDS-Ecto-sp9_F_contig9953:2546..26041692279029.480824-CDS-Ecto-sp9_F_contig9953:2546..2604Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9953 2547..2604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9953.18019.1

>prot_Ecto-sp9_F_contig9953.18019.1 ID=prot_Ecto-sp9_F_contig9953.18019.1|Name=mRNA_Ecto-sp9_F_contig9953.18019.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=87bp
GSAAVPPRQGNNCARPRCEDESAKGSFGGRTGGAGTHHKGWQDQTGDEGE
TREKVKKIVRFRAVKGSLSRKTSRSWRVRTCSTRTP*
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mRNA from alignment at Ecto-sp9_F_contig9953:1462..2604-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9953.18019.1 ID=mRNA_Ecto-sp9_F_contig9953.18019.1|Name=mRNA_Ecto-sp9_F_contig9953.18019.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1143bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9953:1462..2604- (Ectocarpus species9 EcSCA_722f female)
GGCTCGGCTGCCGTTCCTCCGCGACAGGGAAACAATTGTGCAAGACCTCG
CTGCGAAGGTGGGCACGCCCTCGGTGGTGTTTCTCGAAGAAAATGTCGTC
CATTAATACAGACTCTAGGACAAGGTCGACGGTAAATATGTGTTGCGTAC
TGCCGAAGGGAGGGTGCTGGATTTATGAACAGTACACGCGTACCAAAAAA
CATGATTGAGAACTTCGAAATTGGGAGCGTTCAAGTGGGAGTTCCTTGAT
GCAAGAAGAAGCAGCTGACCAAGCTCCTCACATGTAGAGTGTCAGATACG
GTCGGTCGAGTACATAGTATGGAAGAGCTTGTTCATGAGTACACTCGAGG
GGCAGGGAATTTTAATTTTGAACCCTTCCGGCGTCAGAAACGTTCCCCCA
TCGCGGAACCTTTTCTTGTTAGAAAGACGAGCCCATAGCGTAGATAATTA
CCGTGAAAGACGGTCCGTCAATAGACCAGCGGGAGAGGAATCATTCGACT
CTATTGGGCATCAGCTGAAATACTTCTTCTTGAGAAGTTGGGTTTCCTAC
TAACCAGTAAGCAACAATTTCCCAAAATGTTGGACTAGTGTCACGAAATT
AGTAACGCCTCGTGCCGACTTAATCGGGCTTGTGCGACCTTGCAACCAGT
AATGATCCTCTTGCGAGAAAATCTTCCCAGCTTTCAGTGTGGTTGTCACA
CCTGAGTGTGGCACTCGCCACTGAACCTCGCCGCTCTCTTTCTCATCTCA
ATACATCAGCCTCGCTCCCTTCGAACGCGTGCTTTCTCACAAGAGGGCCG
GAATTGTACATATCACCGCTGTCTCCTCCCTGTTGCAGATGAGAGCGCGA
AAGGAAGCTTTGGAGGAAGAACGGGCGGCGCTGGAACCCACCACAAAGGG
TGGCAAGACCAAACAGGCGACGAAGGGGAAACCCGGGAAAAAGTGAAGAA
GATAGTGCGCTTTAGGGCTGTGAAGGGTTCATTGAGTAGGAAGACATCGA
GGAGCTGGCGGGTCCGCACGTGCTCAACAAGAACGCCATAGACGGTCAGG
CAGGCAGATCGCGGTACGTTAAGAGAGTATCAGAGAGAATGAGGGAAGAA
ATCGGACGAATGAGAATGAAGAGAGTCCATGCAGACAACCGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9953:1462..2604-

>mRNA_Ecto-sp9_F_contig9953.18019.1 ID=mRNA_Ecto-sp9_F_contig9953.18019.1|Name=mRNA_Ecto-sp9_F_contig9953.18019.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9953:1462..2604- (Ectocarpus species9 EcSCA_722f female)
GGCTCGGCTGCCGTTCCTCCGCGACAGGGAAACAATTGTGCAAGACCTCG
CTGCGAAGGGCTCGGCTGCCGTTCCTCCGCGACAGGGAAACAATTGTGCA
AGACCTCGCTGCGAAGATGAGAGCGCGAAAGGAAGCTTTGGAGGAAGAAC
GGGCGGCGCTGGAACCCACCACAAAGGGTGGCAAGACCAAACAGGCGACG
AAGGGGAAACCCGGGAAAAAGTGAAGAAGATAGTGCGCTTTAGGGCTGTG
AAGGGTTCATTGAGTAGGAAGACATCGAGGAGCTGGCGGGTCCGCACGTG
CTCAACAAGAACGCCATAGATGAGAGCGCGAAAGGAAGCTTTGGAGGAAG
AACGGGCGGCGCTGGAACCCACCACAAAGGGTGGCAAGACCAAACAGGCG
ACGAAGGGGAAACCCGGGAAAAAGTGAAGAAGATAGTGCGCTTTAGGGCT
GTGAAGGGTTCATTGAGTAGGAAGACATCGAGGAGCTGGCGGGTCCGCAC
GTGCTCAACAAGAACGCCATAG
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