mRNA_Ecto-sp9_F_contig994.18007.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig994.18007.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYC8_ECTSI) HSP 1 Score: 1214 bits (3142), Expect = 0.000e+0 Identity = 841/987 (85.21%), Postives = 864/987 (87.54%), Query Frame = 3
Query: 315 VKKERSNLVQAGKHPINGTTAVFATTAARPATKPVPPTPRSRQFTTPPVSPYYSPRKKEDAFPSRSNNNGDGSSLAAGAPWCSFECGDGISVGGDNGSSSIASAAGIGNPVLEAEAYRLEALRRRRFVELQQMLAFELRGLAREERDRQLAEKARAREAMAERKRAKMFEAADRARLXXXXXXXXXXXXXXXXXXXXRVVEDEAARRFDEQDHLRHTQAKLAAERRAELAAQKAALLQGRIDRGARVRRARQLRTERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKAGGRIAALEDRVASFRIRQKEIEERERELREEEAAELNRSRHEAARRKIEGDAKRKADEVEGKVLREKRIAQXXXXXXXXXXXXXXXXXXXXXXXXDRMMERKTKADKEKREAIRLKLEQDDAKVELLRLEKERLRATRGKLSSETTKQWKMLQGHFEALKDHSNGHSISYGELAAAVTAAGAGTATASTAAA-EPGGDRNRLGGAKPAATAARRPNATTPRAVRPPGPHHRADMSVVRGGGADSLSPAAHSGSPRIPPPAQNDIMTGARARAAPRPPPGPISSASVASITSSLSLLVRDGSRGXXXXXKAPPLTARATANRRISPRKPSTSAGDKRGGSGRGSDNQREARVDNPAAAGLRERYMYDTRAGQKRVGGGGARGGTRMATASKTKTPRGRKTHLVQKTESAADGLGHGRGETTSSASQAGRQNVRPETGRRPLAGACDELESGTDDVEAYASMSSSYSTDANSTPNTTTXXXPLPSSRPSSPRGEPGASSSDADLLRGRYDRELLAVLAEEQAAEGAREKALAAAVARAKAAQARAGYIGGKKRSAAATGGQIEDGGCPESQGVSPMSGGEPDGVVATTARLAIAAAPGEGXXXXXXXXXXXXXXXXXAAVAKREAIRLEKELATERREASERVLRVSEAYEEALRKLSCDRQSSP-SLAVYR 3269
VKKERSNLV+AGKHPINGTTAVFAT+AARP TKPVPPTPRSRQFTTPPVSPYYSPR+KEDAFPSRS+NNGDGSSLA+GA W SFECGDG SVGGDNGSSSIASAAGIGNPVLEAEAYRLEALRRRRFVELQQMLAFELRGLAREERDRQLAEKARAREAMAERKRAKMFEAADRARL RVVEDEAARRFDEQD LR TQAKLAAERRAELAAQKAALLQGRIDRGARVRRARQLRTERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RIAALEDRVASFRIRQKEIEE AAELNR+RHEAARRKIEGDAKRKADEVEGKVLREKR+AQXXXXXXXXXXXXXXXXXXXXXXXXDRMMERK KADKE+REAIRLKLEQDDAKVELLRLEKERLRATRGKLSSETTKQ KMLQGHFEALK++SNGHSISYGELAAAVTAAG EPGGDRN LGGA PAA AARRPNATTPRAVRP GPHHRADMSV RGGGADSL PA HSGSPR PPPAQNDI TGARARAAPR ASIT+SLSLLVRDGS GXXXXXK PPLTARATA+RRISPRKPSTSAGD+RGGSG G + R ARVDNPAAAGLRE YMYDTR GQK VG G ARGGTR ATASK KTPRGRK LV+ E+AA GLGHGRG TTSSAS+ GR+N RPETGRRPLA A DELESG+DD EAYASMSSSYSTDANST XXX LPSSRPSSPRGEPGASSSDADLLRGRYDRELLAVLAEEQAAEGAREKALAAAVARAKAAQARAGY+GGK+ SAAATGGQI+DGGCPESQGVSPMSGGEPDGVVATTARLAIAAAPGEGXXXX AAVA R+AIRLEKELATERREASERVLRVSEAYEEALRKLSCDRQ SP SLAV R
Sbjct: 14 VKKERSNLVRAGKHPINGTTAVFATSAARPPTKPVPPTPRSRQFTTPPVSPYYSPRRKEDAFPSRSDNNGDGSSLASGAAWSSFECGDGSSVGGDNGSSSIASAAGIGNPVLEAEAYRLEALRRRRFVELQQMLAFELRGLAREERDRQLAEKARAREAMAERKRAKMFEAADRARLARERSWQDREKISEREAAARRVVEDEAARRFDEQDRLRRTQAKLAAERRAELAAQKAALLQGRIDRGARVRRARQLRTERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIAALEDRVASFRIRQKEIEEXXXXXXXXXAAELNRARHEAARRKIEGDAKRKADEVEGKVLREKRVAQXXXXXXXXXXXXXXXXXXXXXXXXDRMMERKAKADKERREAIRLKLEQDDAKVELLRLEKERLRATRGKLSSETTKQRKMLQGHFEALKEYSNGHSISYGELAAAVTAAGXXXXXXXXXXXXEPGGDRNCLGGANPAAAAARRPNATTPRAVRPSGPHHRADMSVARGGGADSLFPAPHSGSPRFPPPAQNDIKTGARARAAPRXXXXXXXXXXXASITTSLSLLVRDGSHGXXXXXKTPPLTARATAHRRISPRKPSTSAGDRRGGSGSG--DHRGARVDNPAAAGLREWYMYDTREGQKLVGRGSARGGTRTATASKAKTPRGRKNRLVKAKETAAGGLGHGRGGTTSSASETGRENRRPETGRRPLAEASDELESGSDDFEAYASMSSSYSTDANSTXXXXXXXXXLPSSRPSSPRGEPGASSSDADLLRGRYDRELLAVLAEEQAAEGAREKALAAAVARAKAAQARAGYVGGKRSSAAATGGQIKDGGCPESQGVSPMSGGEPDGVVATTARLAIAAAPGEGXXXXAVRGDGQDRREEEAAVATRDAIRLEKELATERREASERVLRVSEAYEEALRKLSCDRQCSPPSLAVSR 998
BLAST of mRNA_Ecto-sp9_F_contig994.18007.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGL3_9PHAE) HSP 1 Score: 1065 bits (2753), Expect = 0.000e+0 Identity = 727/1015 (71.63%), Postives = 755/1015 (74.38%), Query Frame = 3
Query: 315 VKKERSNLVQAGKHPINGTTAVFATTAARPATKPVPPTPRSRQFTTPPVSPYYSPRKKEDAFPSRSNNNGDGSSLAAGAPWCSFECGDGISVGGDNGSSSIASAAGIGNPVLEAEAYRLEALRRRRFVELQQMLAFELRGLAREERDRQLAEKARAREAMAERKRAKMFEAADRARLXXXXXXXXXXXXXXXXXXXXRVVEDEAARRFDEQDHLRHTQAKLAAERRAELAAQKAALLQGRIDRGARVRRARQLRTERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------EKAGGRIAALEDRVASFRIRQKEIEERERELREEEAAELNRSRHEAARRKIEGDAKRKADEVEGKVLREKRIAQXXXXXXXXXXXXXXXXXXXXXXXXDRMMERKTKADKEKREAIRLKLEQDDAKVELLRLEKERLRATRGKLSSETTKQWKMLQGHFEALKDHSNGHSISYGELAAAVTAAGAGTATASTAAA-------EPGGDRNRLGGAKPAATAARRPNATTPRAVRPPGPHHRADMSVVRGGGADSLSPAAHSGSPRIPPPAQNDIMTGARARAAPRPPPGPISSASVASITSSLSLLVRDGSRGXXXXXKAPPLTARATANRRISPRKPSTSAGDKRGGSGRGSDNQREARVDNPAAAGLRERYMYDTRAGQKRVGGGGARGGTRMATASKTKTPRGRKTHLVQKTESAADGLGHGRGETTSSASQAGRQNVRPETGRRPLAGACDELESGTDDVEAYASMSSSYSTDANSTPNTTTXXXPLPSSRPSSPRGEPGASSSDADLLRGRYDRELLAVLAEEQAAEGAREKALAAAVARAKAAQARAGYIGGKKRSAAATGGQIEDGGCPESQGVSPMSGGEPDGVVATTARLAIAAAPGEGXXXXXXXXXXXXXXXXXAAVAKREAIRLEKELATERREASERVLRVSEAYEEALRKLSCDRQSSP-SLAVYR 3269
VKKERSNLV+AG HPINGTTAVFATTAARPATKPVP TPRSRQFTTPPVSPYYSPR+KED FPSRSNNNGDG+SLA+GA W SF+ N SSSI SAAGIGNPVLEAEAYRLEALRRRRFVELQQML FELRGLARE+RDRQLAEKAR REA AERKRAKMFEAADRARL RV EDEAARRFDEQD LR TQAKLAAERRA LAAQKAALLQGRIDRGARVRRARQLRTE XXXXXXX EKAGG+ AALEDR LNR+RHEAARRKIEGDAKRKADE+EGKVLRE+RIAQ XXXXXXXXXXXXXXXXXXXXX MMERK K DKE+REAIRLKLEQDDAKVELLRLEKERL+ATRGKLSSE TKQWKMLQGHFEALKDHSNGHSISYGELAAAVTAAG GT EPGGDRNRL G+ PAA AARRPNATTPRAVRP GPHH ADMSV RGGGADSLSPAAHSGSPR PPPAQNDI+TGARARAAPRP SVASITSSLSLLVRDGS GXXXXX PPLTARATA+RRISPRKPSTSAGD+RGGSGRGS +QR ARVDNPAAAGLRERYMYDTRAGQKRVGGGGARGGT+ A ASKT PRGRKTHLV+ E AADGLGHGRGETTSSAS++GR+ + PE RPLAGACDEL SGTDD EA SMSSSYSTDA XXX GASSSD DLLR RYDRELLAVLAEEQAAE REKALAAAVARAKAAQARAGYIG K ++ G CPE QGVSPMSGGEPDGVVATTARLAIAAAP EGXXXX AAVA REAIRLEKELATERREASERVLRVS+AYEEA+RKLSCDRQSSP SLA+ R
Sbjct: 7 VKKERSNLVRAG-HPINGTTAVFATTAARPATKPVPATPRSRQFTTPPVSPYYSPRRKEDTFPSRSNNNGDGNSLASGAAWSSFDXXXXXXXXXXNASSSIRSAAGIGNPVLEAEAYRLEALRRRRFVELQQMLTFELRGLAREKRDRQLAEKARTREATAERKRAKMFEAADRARLARERSWQDREKVAEREAAARRVAEDEAARRFDEQDRLRRTQAKLAAERRARLAAQKAALLQGRIDRGARVRRARQLRTEXXXXXXXXERDAAAETAKSTTVTPHSDCLVDEKRDTKKTRRARESEHEAKKAAAAERWAAARAGVEEARRRRDAATKTLQEKAGGQTAALEDREIXXXXXXXXXXX---------XXXLNRARHEAARRKIEGDAKRKADEIEGKVLREERIAQQREXXXXXXXXXXXXXXXXXXXXXXXMMERKAKTDKERREAIRLKLEQDDAKVELLRLEKERLQATRGKLSSEMTKQWKMLQGHFEALKDHSNGHSISYGELAAAVTAAGVGTXXXXXXXXXXXXXXXEPGGDRNRLRGSDPAAVAARRPNATTPRAVRPSGPHHCADMSVARGGGADSLSPAAHSGSPRFPPPAQNDIITGARARAAPRPXXXXXXXXSVASITSSLSLLVRDGSHGXXXXXMTPPLTARATAHRRISPRKPSTSAGDRRGGSGRGSGDQRGARVDNPAAAGLRERYMYDTRAGQKRVGGGGARGGTKTAAASKTNIPRGRKTHLVKTKELAADGLGHGRGETTSSASESGREKLHPE---RPLAGACDELGSGTDDAEAVTSMSSSYSTDAXXXXXXXXXXXXXXXXXXXXXXXX-GASSSDTDLLRSRYDRELLAVLAEEQAAEDDREKALAAAVARAKAAQARAGYIGRK----------VKRGRCPEGQGVSPMSGGEPDGVVATTARLAIAAAPVEGXXXXAVRGVEQDRREEEAAVATREAIRLEKELATERREASERVLRVSDAYEEAIRKLSCDRQSSPPSLAISR 997 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig994.18007.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig994.18007.1 >prot_Ecto-sp9_F_contig994.18007.1 ID=prot_Ecto-sp9_F_contig994.18007.1|Name=mRNA_Ecto-sp9_F_contig994.18007.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=861bp MLAFELRGLAREERDRQLAEKARAREAMAERKRAKMFEAADRARLARERSback to top mRNA from alignment at Ecto-sp9_F_contig994:15923..25170- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig994.18007.1 ID=mRNA_Ecto-sp9_F_contig994.18007.1|Name=mRNA_Ecto-sp9_F_contig994.18007.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=9248bp|location=Sequence derived from alignment at Ecto-sp9_F_contig994:15923..25170- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig994:15923..25170- >mRNA_Ecto-sp9_F_contig994.18007.1 ID=mRNA_Ecto-sp9_F_contig994.18007.1|Name=mRNA_Ecto-sp9_F_contig994.18007.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=5166bp|location=Sequence derived from alignment at Ecto-sp9_F_contig994:15923..25170- (Ectocarpus species9 EcSCA_722f female)back to top |