mRNA_Ecto-sp9_F_contig9933.18002.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9933.18002.1
Unique NamemRNA_Ecto-sp9_F_contig9933.18002.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9933.18002.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD7_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 3.420e-31
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = -2 
Query:  123 AALGSDASKLAPLSNAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENPDNEEGGEE 314
            A LGSDASKLAPL+NAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENPDN+EGGE+
Sbjct:  131 AVLGSDASKLAPLANAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENPDNQEGGEQ 194
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BLAST of mRNA_Ecto-sp9_F_contig9933.18002.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU9_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.490e-30
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = -2 
Query:  123 AALGSDASKLAPLSNAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENPDNEEGGEE 314
            A LGSDASKLAPL+NAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENPDN+EGGE+
Sbjct:  213 AVLGSDASKLAPLANAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENPDNQEGGEQ 276
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BLAST of mRNA_Ecto-sp9_F_contig9933.18002.1 vs.
Match: EF-hand (domain-containing protein n=7 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS19_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 7.180e-29
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = -2 
Query:  123 AALGSDASKLAPLSNAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENPDNEEGGEE 314
            A LGSDASKLAPL+NA SDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENPDN+EGGEE
Sbjct:  350 AVLGSDASKLAPLANASSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENPDNQEGGEE 413
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BLAST of mRNA_Ecto-sp9_F_contig9933.18002.1 vs.
Match: EF-hand (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ0_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 8.430e-27
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = -2 
Query:  123 AALGSDASKLAPLSNAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENPDNE-EGGEE 314
            A LG+DA KLAPL+NAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENP+N+ EGGEE
Sbjct:  243 AVLGADAVKLAPLANAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENPENQQEGGEE 307
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BLAST of mRNA_Ecto-sp9_F_contig9933.18002.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI4_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 2.390e-26
Identity = 55/64 (85.94%), Postives = 60/64 (93.75%), Query Frame = -2 
Query:  123 AALGSDASKLAPLSNAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENPDNEEGGEE 314
            A LG+DA KLAPL+NAGSDVVFVALLAAVAYSVGTSATGSFP+KLPLLGRLNRENP NE+ G+E
Sbjct:  176 AVLGADAVKLAPLANAGSDVVFVALLAAVAYSVGTSATGSFPSKLPLLGRLNRENPGNEQEGDE 239
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BLAST of mRNA_Ecto-sp9_F_contig9933.18002.1 vs.
Match: Tic20-like (protein n=15 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1M4_SACJA)

HSP 1 Score: 95.5 bits (236), Expect = 5.090e-21
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = -2 
Query:  135 LGSDASKLAPLSNAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENPDNEE 308
            LG DA KL PL+ AGSDVVFVA+LAAVAYSV TS+TGSFPNKLPLLGRLNRENPD EE
Sbjct:  353 LGQDAYKLVPLAEAGSDVVFVAMLAAVAYSVVTSSTGSFPNKLPLLGRLNRENPDREE 410
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BLAST of mRNA_Ecto-sp9_F_contig9933.18002.1 vs.
Match: EF-hand (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS20_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 7.930e-18
Identity = 39/47 (82.98%), Postives = 39/47 (82.98%), Query Frame = -3 
Query:  167 WGPTRPSWRLCRTRVRTWCSWLCWRLWRTPLALRRRDRSRTSFRCWG 307
            WGPTRPSWRL RTRVRTWCSWLC     TPLALRRRDRSRTS  CWG
Sbjct:  353 WGPTRPSWRLWRTRVRTWCSWLCXXXXXTPLALRRRDRSRTSSHCWG 399
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BLAST of mRNA_Ecto-sp9_F_contig9933.18002.1 vs.
Match: EF-hand (domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG5_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.430e-9
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = -2 
Query:  198 LGSDASKLAPLSNAGSDVVFVALLAAVAYSVGTSATG 308
            LG+DA KLAPLSNAGSDVVFVALLAAVAYSVGTSATG
Sbjct:  352 LGADAVKLAPLSNAGSDVVFVALLAAVAYSVGTSATG 388
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9933.18002.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
Uncharacterized3.420e-3193.75protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.490e-3093.75protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EF-hand7.180e-2993.75domain-containing protein n=7 Tax=Ectocarpus silic... [more]
EF-hand8.430e-2789.23domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized2.390e-2685.94protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Tic20-like5.090e-2184.48protein n=15 Tax=Saccharina japonica TaxID=88149 R... [more]
EF-hand7.930e-1882.98domain-containing protein n=1 Tax=Ectocarpus silic... [more]
EF-hand1.430e-994.59domain-containing protein n=2 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9933contigEcto-sp9_F_contig9933:4564..4878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTIC 20 related, plastid import
Ec32 orthologEc-08_001780.2
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931089.7016025-CDS-Ecto-sp9_F_contig9933:4563..48781622931089.7016025-CDS-Ecto-sp9_F_contig9933:4563..4878Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9933 4564..4878 +
1692279028.5250316-CDS-Ecto-sp9_F_contig9933:4563..48781692279028.5250316-CDS-Ecto-sp9_F_contig9933:4563..4878Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9933 4564..4878 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9933.18002.1prot_Ecto-sp9_F_contig9933.18002.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9933 4564..4878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9933.18002.1

>prot_Ecto-sp9_F_contig9933.18002.1 ID=prot_Ecto-sp9_F_contig9933.18002.1|Name=mRNA_Ecto-sp9_F_contig9933.18002.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=105bp
LIKTHQTQLYVQQHTRTQTAGELERAPCREIPPNHKLHFLYSSPPSSLSG
FSRFNRPNNGSLFGNDPVAEVPTEYATAANKATNTTSEPAFDKGASLDAS
DPNAA
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mRNA from alignment at Ecto-sp9_F_contig9933:4564..4878+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9933.18002.1 ID=mRNA_Ecto-sp9_F_contig9933.18002.1|Name=mRNA_Ecto-sp9_F_contig9933.18002.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=315bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9933:4564..4878+ (Ectocarpus species9 EcSCA_722f female)
CTCATCAAGACTCACCAAACACAGCTATATGTACAACAACACACACGTAC
ACAAACAGCAGGGGAGCTAGAACGTGCACCCTGCCGGGAAATTCCACCAA
ATCATAAACTTCATTTCCTCTACTCCTCGCCCCCCTCCTCGTTGTCGGGG
TTCTCGCGGTTCAATCGCCCCAACAACGGAAGCTTGTTCGGGAACGATCC
CGTCGCCGAAGTGCCAACGGAGTACGCCACAGCCGCCAACAAAGCCACGA
ACACCACGTCCGAACCCGCGTTCGACAAAGGCGCCAGCTTGGACGCGTCG
GACCCCAACGCCGCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9933:4564..4878+

>mRNA_Ecto-sp9_F_contig9933.18002.1 ID=mRNA_Ecto-sp9_F_contig9933.18002.1|Name=mRNA_Ecto-sp9_F_contig9933.18002.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9933:4564..4878+ (Ectocarpus species9 EcSCA_722f female)
CTCATCAAGACTCACCAAACACAGCTATATGTACAACAACACACACGTAC
ACAAACAGCAGGGGAGCTAGAACGTGCACCCTGCCGGGAAATTCCACCAA
ATCATAAACTTCATTTCCTCTACTCCTCGCCCCCCTCCTCGTTGTCGGGG
TTCTCGCGGTTCAATCGCCCCAACAACGGAAGCTTGTTCGGGAACGATCC
CGTCGCCGAAGTGCCAACGGAGTACGCCACAGCCGCCAACAAAGCCACGA
ACACCACGTCCGAACCCGCGTTCGACAAAGGCGCCAGCTTGGACGCGTCG
GACCCCAACGCCGCCCTCATCAAGACTCACCAAACACAGCTATATGTACA
ACAACACACACGTACACAAACAGCAGGGGAGCTAGAACGTGCACCCTGCC
GGGAAATTCCACCAAATCATAAACTTCATTTCCTCTACTCCTCGCCCCCC
TCCTCGTTGTCGGGGTTCTCGCGGTTCAATCGCCCCAACAACGGAAGCTT
GTTCGGGAACGATCCCGTCGCCGAAGTGCCAACGGAGTACGCCACAGCCG
CCAACAAAGCCACGAACACCACGTCCGAACCCGCGTTCGACAAAGGCGCC
AGCTTGGACGCGTCGGACCCCAACGCCGCC
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