mRNA_Ecto-sp9_F_contig9919.17986.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9919.17986.1
Unique NamemRNA_Ecto-sp9_F_contig9919.17986.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9919.17986.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y5_ECTSI)

HSP 1 Score: 484 bits (1247), Expect = 1.420e-171
Identity = 240/252 (95.24%), Postives = 246/252 (97.62%), Query Frame = 2 
Query:  125 MWAPLLLGPLLAIQLHGGTAATAAVGCESEYIHVARTIEFKAAEGCYRREKGSGPSSGAAVYVKEAADEGAVYQTTVSKAPRGNSHRWRIGVQRASESSRVLCSGLSVSAWMDSPTLVNEWECGSSAGNLSARRFIFGNELVTCGCTSPQEEGLVLPTEHSARGEKRVKSHKTGARGSIRGRGSSGKGVHGVFADATGVALVSRALGEDAGDLHGFWIWVIVAGSIAGLIVLCCVGWYIRNPFFCQKSPLPS 880
            MWAPLLLGPLLAIQLHGGTAATA VGCESEYIHVART EFKAAEGCYRRE+GSGPS GAAVYVKEAAD+GAVYQTTVSKAPRGNSH+WRIG+QRASESSRVLCSGLSVSA MDSPTLVNEWECGSSAGNLSARRFIFGNELVTCGCTSPQEEGLVLPTE+ ARGEKRVKSHKTGARGSIRGRGSSGKGVHGVFADATGVALVSRAL EDAGDLHGFWIWVIVAGSIAGLIVLCCVGWYIRNPFFCQKSPLP+
Sbjct:    1 MWAPLLLGPLLAIQLHGGTAATA-VGCESEYIHVARTTEFKAAEGCYRREEGSGPSGGAAVYVKEAADQGAVYQTTVSKAPRGNSHQWRIGIQRASESSRVLCSGLSVSASMDSPTLVNEWECGSSAGNLSARRFIFGNELVTCGCTSPQEEGLVLPTEYLARGEKRVKSHKTGARGSIRGRGSSGKGVHGVFADATGVALVSRALEEDAGDLHGFWIWVIVAGSIAGLIVLCCVGWYIRNPFFCQKSPLPN 251
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9919.17986.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.420e-17195.24protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9919contigEcto-sp9_F_contig9919:500..4685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_011100.1
Exons4
Model size886
Cds size762
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9919.17986.1prot_Ecto-sp9_F_contig9919.17986.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9919 500..4561 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931087.0564795-CDS-Ecto-sp9_F_contig9919:499..6291622931087.0564795-CDS-Ecto-sp9_F_contig9919:499..629Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9919 500..629 -
1692279027.1749597-CDS-Ecto-sp9_F_contig9919:499..6291692279027.1749597-CDS-Ecto-sp9_F_contig9919:499..629Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9919 500..629 -
1622931087.073652-CDS-Ecto-sp9_F_contig9919:1514..17671622931087.073652-CDS-Ecto-sp9_F_contig9919:1514..1767Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9919 1515..1767 -
1692279027.1853034-CDS-Ecto-sp9_F_contig9919:1514..17671692279027.1853034-CDS-Ecto-sp9_F_contig9919:1514..1767Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9919 1515..1767 -
1622931087.0893595-CDS-Ecto-sp9_F_contig9919:2633..27751622931087.0893595-CDS-Ecto-sp9_F_contig9919:2633..2775Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9919 2634..2775 -
1692279027.198455-CDS-Ecto-sp9_F_contig9919:2633..27751692279027.198455-CDS-Ecto-sp9_F_contig9919:2633..2775Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9919 2634..2775 -
1622931087.1349354-CDS-Ecto-sp9_F_contig9919:4324..45611622931087.1349354-CDS-Ecto-sp9_F_contig9919:4324..4561Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9919 4325..4561 -
1692279027.2127185-CDS-Ecto-sp9_F_contig9919:4324..45611692279027.2127185-CDS-Ecto-sp9_F_contig9919:4324..4561Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9919 4325..4561 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931087.1551552-UTR-Ecto-sp9_F_contig9919:4561..46851622931087.1551552-UTR-Ecto-sp9_F_contig9919:4561..4685Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9919 4562..4685 -
1692279027.2246706-UTR-Ecto-sp9_F_contig9919:4561..46851692279027.2246706-UTR-Ecto-sp9_F_contig9919:4561..4685Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9919 4562..4685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9919.17986.1

>prot_Ecto-sp9_F_contig9919.17986.1 ID=prot_Ecto-sp9_F_contig9919.17986.1|Name=mRNA_Ecto-sp9_F_contig9919.17986.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=254bp
MWAPLLLGPLLAIQLHGGTAATAAVGCESEYIHVARTIEFKAAEGCYRRE
KGSGPSSGAAVYVKEAADEGAVYQTTVSKAPRGNSHRWRIGVQRASESSR
VLCSGLSVSAWMDSPTLVNEWECGSSAGNLSARRFIFGNELVTCGCTSPQ
EEGLVLPTEHSARGEKRVKSHKTGARGSIRGRGSSGKGVHGVFADATGVA
LVSRALGEDAGDLHGFWIWVIVAGSIAGLIVLCCVGWYIRNPFFCQKSPL
PSE*
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mRNA from alignment at Ecto-sp9_F_contig9919:500..4685-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9919.17986.1 ID=mRNA_Ecto-sp9_F_contig9919.17986.1|Name=mRNA_Ecto-sp9_F_contig9919.17986.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4186bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9919:500..4685- (Ectocarpus species9 EcSCA_722f female)
GTGCCACTGCCTTCTCGCCGCTGTCGGTGACTGCTGTTGTTGCTACATTC
GGCGTGGCTTCTCGCTTCCGTCTGTCGCCTTACGAGGGTAAAGTAGCGCG
ACCGTTCCGTGAGAGGATCGAAATATGTGGGCACCGCTGCTTCTTGGGCC
CCTGTTGGCGATACAGCTTCACGGCGGTACGGCAGCAACAGCAGCAGTTG
GGTGCGAAAGCGAGTACATCCATGTGGCGAGAACCATCGAGTTTAAGGCT
GCCGAAGGCTGCTACCGTCGGGAGAAAGGCAGCGGGCCTAGCAGCGGCGC
TGCTGTCTACGTCAAGGAGGCGGCCGACGAGGGGGCAGTCTATCAAACAA
CGGTCAGCAAGGTGTGTGTTGGTTGACCGACTTTGTGTTTGGTGTGGTAT
TCTGTATCTGTAGATCGGAGTCGGCCCTCTTTGTTCTTCACGGACGAAAG
TGCGTTGCGCTTCCCTCTGCTCTGCCTCGGCGGGCGGCGGGCGTTCTGAA
CCCAACAGCGGTAGTCGTAAGTGGCGGACAGAGGAATTCTGGTAGCCCTC
AATTGCCTCATTCACGGACTCTGCGTTGATTTCCTCCCGCCTAACAGCAG
TCGGTGGTGGGCCCGATTTCCTTTTCCGCGTTGCCAGTCGGCGGGTTCAT
TCGCGGGAACCTACTGGGTAATATAACATCGGCTAGCTACAACGCCGCCG
CCAGCAGTGCCAATCACAGGGTAGCTTCGTAACCACATTCATCGGTGCCA
CTCAAGAACGACCACTGCTGCGCGCCTGAGTGTTGCCCAGGGTGTGCGGC
AATGACAATCCGCCCTGTCTATAGCCTGAGCAAGCAGCAAGGACCCCAAT
TCTACCGTTCGTTGCTACCATGCACAGAGGACCATGTGAGCAGGCGTATC
ATGCGTATGTATGACATGGAAATCGTCACTCCGCGCCCACTCTCTTTCTC
TCTTGCTGTGCATGGTACCACCCACCCATGGCACCAAGAGAGATCGGTGC
CCAGATGTACAACGACTCAACAGAGAACAAATCATAAAAGGGACAAAGGC
CCGGGTGAACGTGCGTGTACAGCAGTATAAGTAATACAGTATAAACTTCT
CGGAAAATTCGTTTTTCTCAGACTTTTCCCAAAAGTGAAAGGTTGTGTTG
TATCACCTGGTATTTTGTCAGAACGGTTAGAAAGATCAAGAGGTCCTGTA
CATGCCGGGGGGGGCCACCGCACTGCTGTTGCAGTCCGTCCGTCTTGTCT
ACTGCTCTTGGCGCGCAAGTCTCGGCCTCACCGCTTATTTTGGGGCTGCT
TGCTCTCTGATACTCTTCGTGGACACATCTGTCGGCACTTTTCTGCTTTA
TTTGAAGACCTGACTTGACGTCTTTGCAACACCTGCTCTGCTGCTGGTGG
TGTACTGTATCTGCGCGAGACCCACCATGCATCATCGCATCGTACATAAA
ACGCGCGCCGGGCTCACGGCCTCCTTACTTTCGCTAAATAGGCCCGTCAG
TCTCGGCAGGCGTTTGCGTTGCTGGCCTTGCGTACGTAAACCAAAACTTG
CTCGATTATTTGATCAGCGTACCTAACGGCGTACGCCCTGTTCTGAAACA
TAGGGGCCTTTGTGGTATTCGCGCTTGTATGCAAATGGCCCTTACATTTT
CGAACAGAGCGTGTACGTGTGAGCACCGACGAAACCAACCTCTTGCTCCC
CGCCGCAACCACCATACAGCCCTACCTCTCCCCCTTTGAATATTGAAGCA
GTAGTCCTATAAATCTCCCTGACGATATCTCCCTGACGGCAGGCGTGTCC
ACCTGCGGCCATCGTCCTAGCTCTGAGCTTACTGCTAAAGTGGCACAACA
CCCCAATCCCCTAACACTACCCCTGTACCCGAACCATGAACCCACTTGCT
TGTTTGCCAGGCACCGCGCGGCAACTCGCATCGGTGGAGAATCGGCGTAC
AGCGCGCATCTGAATCTTCACGGGTGCTGTGCAGCGGTTTGTCTGTCAGC
GCTTGGATGGACTCGCCAACGCTAGTCAATGAGTGGGAGTGTGGCAGTTC
AGGTGCGCGCGGGGGTGGTTTCGTTTTTTGGGGGAGAAAATGAATCGTAC
GGAAAATCGGGGTTACAGCAGCAGTTCCTCCGCCCGCAGCATGGACTTGA
CGAGCGCGCGTCATCATTTACTCAAAGCCAAAATCCACTTTCTCTGACGC
TATGAATTCATTGCTAATCTGTCTCTGACTCTTTTCTGTGATAGAGATGG
ATTCGTTGTGTCATGTTAAGAAAAAAAAAAAAAAACATGTGCACCTCGTT
CGATGTTGCTGCGTACCACGTCTTTCTTTCTTGCGTTCACTACGAAGGTA
CCTCTGTCTTTTTGAGTGTTGGGAGTGCTGGGGTCTGTGCGTAAGAGTGT
AGGACATTCGACCAACGCTTGGACTCATGGTGAAGTAGGGACCCCGTACT
ACGATCCATGTCAGGTAAGGTTGCGTATGGCGGGCACTCCATGATTCTTC
CGTCGCCTGCAACAAGAATTTTCGGAGAGAAATCTTGGTGGCCTGCCTGC
CCACTGCTGGTGTCGGCTACGGACAAGGCCTTCCATACAACTCGGTTCCC
CCGCCATTCAGGATCCAAGCACGTTCAATGCCGTAGCGTGTATCGACAAT
GATTTGTAGCCGGCTTTTCATTTATTGTTGTAGTGGTCTCGAACAATAAC
GGCGTAAACCTACCTCCCTGGTTACATCCACGGGGCCCCGGTGACACCCG
CGGAGCCCCCGAATCAATCCACGAAAGGAGAATAGAGATGTTTCACCGGT
AGGGTGACCCCACCCCGCGAGCGAGCTTGAAACGTGGGAATGATGTACGT
ACCTGATTTTTTTCTTACTTGAAACGTTTTTTTTGTGTTTTGTGTGTGTG
TTTTGCGGAACCTTTCAGCTGGGAATCTCTCCGCTCGACGATTTATCTTT
GGGAACGAGTTGGTAACTTGCGGCTGCACTAGCCCCCAGGAAGAGGGTCT
CGTCCTGCCAACTGAACACTCGGCCCGTGGAGAAAAGCGCGTGAAATCGC
ACAAGACCGGCGCGCGGGGGAGCATCAGGGGGCGTGGTAGCAGCGGGAAG
GGGGTGCACGGTGTTTTTGCGGACGCTACCGGGGTGGCGCTGGTGTCTCG
AGCCTTGGGGGAGGACGCCGGGTAGGTTGTTTCACGACCTCAATCTGTCT
GGTTTCTACCCAGTACAAGATAAATGGTACCTGTACTTCACTCAGGGTGG
TTACATGGTTTATTTGCCAACCTCAATTTTCGGAACGTGTAATGGCTTTA
TAGTGTTGGGATGTACGGTGAGATGCTGTTGTTTGTATGGGCCTGCGAGG
ACCGAATTTCGTTTTGCTTTCCTGCAAGAGTAGGGCGAGTGTAGGAAATG
GATAGAGGTCACAACGGATTTCACTTACATGAAGACGACGACAGCAACAA
CAACAACAACAACAACAACAACCAATGAGGTACATGCACGGTGCGTACAC
TTTTTATACGCGGGGTCAAGTATGTCGGCATACAGCAGAACACTGCTGTC
ATGCTTTAACGAAAGATGCAGACGGGAGGTATACCGCACACGCGAGGAAC
GAGTTTGCCGTACGTTTAGTTGGGTTTGGTGTCGGTGAATCGGATTATGT
CTTGATCGGGCAATCAAGGCACTAAACGAACGATTAAGACAACATCCCAA
AACATGTGGTAGTATGCATACAAGATGTATTTGGTCCTTTTCACGAGACA
CAGGCACCAAACCGACTACACACCAACTTGACCCACAAACTCTTGAAGAA
ATCCTTTCTCGTGGTCCGTACTGTATGCGTGTACGGCGTGCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCGT
CCTCCCGCGCGCCCCNNNNNNNNNNTCCACATCCCCCACGTCACAACCAC
CTCTTTTTCCGGCTTCCTAGTTAACGCTTGGTGGCGGGCCCCCCCCCCCC
CCCCCCCCTTCCCTTTGCCTTTCCCCGGCACCGGTCCTTCCTCGCGTGAT
TCGCAGCGACCTTCATGGTTTTTGGATATGGGTTATCGTCGCCGGGAGCA
TCGCCGGGCTCATTGTCCTTTGCTGTGTGGGGTGGTACATCAGGAATCCC
TTCTTCTGCCAAAAAAGTCCATTGCCTAGTGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9919:500..4685-

>mRNA_Ecto-sp9_F_contig9919.17986.1 ID=mRNA_Ecto-sp9_F_contig9919.17986.1|Name=mRNA_Ecto-sp9_F_contig9919.17986.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1524bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9919:500..4685- (Ectocarpus species9 EcSCA_722f female)
ATGTGGGCACCGCTGCTTCTTGGGCCCCTGTTGGCGATACAGCTTCACGG
CGGTACGGCAGCAACAGCAGCAGTTGGGTGCGAAAGCGAGTACATCCATG
TGGCGAGAACCATCGAGTTTAAGGCTGCCGAAGGCTGCTACCGTCGGGAG
AAAGGCAGCGGGCCTAGCAGCGGCGCTGCTGTCTACGTCAAGGAGGCGGC
CGACGAGGGGGCAGTCTATCAAACAACGGTCAGCAAGATGTGGGCACCGC
TGCTTCTTGGGCCCCTGTTGGCGATACAGCTTCACGGCGGTACGGCAGCA
ACAGCAGCAGTTGGGTGCGAAAGCGAGTACATCCATGTGGCGAGAACCAT
CGAGTTTAAGGCTGCCGAAGGCTGCTACCGTCGGGAGAAAGGCAGCGGGC
CTAGCAGCGGCGCTGCTGTCTACGTCAAGGAGGCGGCCGACGAGGGGGCA
GTCTATCAAACAACGGTCAGCAAGGCACCGCGCGGCAACTCGCATCGGTG
GAGAATCGGCGTACAGCGCGCATCTGAATCTTCACGGGTGCTGTGCAGCG
GTTTGTCTGTCAGCGCTTGGATGGACTCGCCAACGCTAGTCAATGAGTGG
GAGTGTGGCAGTTCAGGCACCGCGCGGCAACTCGCATCGGTGGAGAATCG
GCGTACAGCGCGCATCTGAATCTTCACGGGTGCTGTGCAGCGGTTTGTCT
GTCAGCGCTTGGATGGACTCGCCAACGCTAGTCAATGAGTGGGAGTGTGG
CAGTTCAGCTGGGAATCTCTCCGCTCGACGATTTATCTTTGGGAACGAGT
TGGTAACTTGCGGCTGCACTAGCCCCCAGGAAGAGGGTCTCGTCCTGCCA
ACTGAACACTCGGCCCGTGGAGAAAAGCGCGTGAAATCGCACAAGACCGG
CGCGCGGGGGAGCATCAGGGGGCGTGGTAGCAGCGGGAAGGGGGTGCACG
GTGTTTTTGCGGACGCTACCGGGGTGGCGCTGGTGTCTCGAGCCTTGGGG
GAGGACGCCGGCTGGGAATCTCTCCGCTCGACGATTTATCTTTGGGAACG
AGTTGGTAACTTGCGGCTGCACTAGCCCCCAGGAAGAGGGTCTCGTCCTG
CCAACTGAACACTCGGCCCGTGGAGAAAAGCGCGTGAAATCGCACAAGAC
CGGCGCGCGGGGGAGCATCAGGGGGCGTGGTAGCAGCGGGAAGGGGGTGC
ACGGTGTTTTTGCGGACGCTACCGGGGTGGCGCTGGTGTCTCGAGCCTTG
GGGGAGGACGCCGGCGACCTTCATGGTTTTTGGATATGGGTTATCGTCGC
CGGGAGCATCGCCGGGCTCATTGTCCTTTGCTGTGTGGGGTGGTACATCA
GGAATCCCTTCTTCTGCCAAAAAAGTCCATTGCCTAGTGAGTGACGACCT
TCATGGTTTTTGGATATGGGTTATCGTCGCCGGGAGCATCGCCGGGCTCA
TTGTCCTTTGCTGTGTGGGGTGGTACATCAGGAATCCCTTCTTCTGCCAA
AAAAGTCCATTGCCTAGTGAGTGA
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