mRNA_Ecto-sp9_F_contig988.17954.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig988.17954.1
Unique NamemRNA_Ecto-sp9_F_contig988.17954.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig988.17954.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL83_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 7.260e-41
Identity = 76/88 (86.36%), Postives = 78/88 (88.64%), Query Frame = 3 
Query:  204 GRLPGDRPPRGESRGGAFKATGETATLWCLKDFVCGKDTQTAMETLNRTERQKAGRSANHRGLGGTDVHRRRYSLHATGNKSTPIPLQ 467
            G  P  R P G  +  AF+ATGETATLWCLKDFVCGKDTQTAMETLNRTERQKAGRSANHRGLGGTDVHRRRYSLHATGNKSTPIPLQ
Sbjct:  452 GAAPRARLPPGAFKEAAFQATGETATLWCLKDFVCGKDTQTAMETLNRTERQKAGRSANHRGLGGTDVHRRRYSLHATGNKSTPIPLQ 539
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BLAST of mRNA_Ecto-sp9_F_contig988.17954.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLF6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.110e-21
Identity = 66/80 (82.50%), Postives = 66/80 (82.50%), Query Frame = 2 
Query:    2 GCSSESCFECCLKSGKPCEAHAKQVERKHREDELLLGRRSSSGXXXXXXXXXXX--LMFPGLAGGAFDDGAAPRGPPPAG 235
            GCSSESCFECCLKSGKPCEAHAKQVERKHREDELLLGR     XXXXXXXXXXX  LM PGL GGAFDDG APR   P G
Sbjct:  638 GCSSESCFECCLKSGKPCEAHAKQVERKHREDELLLGRXXXXXXXXXXXXXXXXGGLMSPGLPGGAFDDGTAPRARLPPG 717
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig988.17954.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized7.260e-4186.36protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.110e-2182.50protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig988contigEcto-sp9_F_contig988:26030..27650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_002590.2
Exons3
Model size473
Cds size471
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig988.17954.1prot_Ecto-sp9_F_contig988.17954.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig988 26032..27650 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931080.4019558-CDS-Ecto-sp9_F_contig988:26031..261491622931080.4019558-CDS-Ecto-sp9_F_contig988:26031..26149Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig988 26032..26149 -
1692279023.6280215-CDS-Ecto-sp9_F_contig988:26031..261491692279023.6280215-CDS-Ecto-sp9_F_contig988:26031..26149Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig988 26032..26149 -
1622931080.4180028-CDS-Ecto-sp9_F_contig988:26792..268841622931080.4180028-CDS-Ecto-sp9_F_contig988:26792..26884Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig988 26793..26884 -
1692279023.6375864-CDS-Ecto-sp9_F_contig988:26792..268841692279023.6375864-CDS-Ecto-sp9_F_contig988:26792..26884Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig988 26793..26884 -
1622931080.4369397-CDS-Ecto-sp9_F_contig988:27389..276501622931080.4369397-CDS-Ecto-sp9_F_contig988:27389..27650Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig988 27390..27650 -
1692279023.6475067-CDS-Ecto-sp9_F_contig988:27389..276501692279023.6475067-CDS-Ecto-sp9_F_contig988:27389..27650Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig988 27390..27650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig988.17954.1

>prot_Ecto-sp9_F_contig988.17954.1 ID=prot_Ecto-sp9_F_contig988.17954.1|Name=mRNA_Ecto-sp9_F_contig988.17954.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=157bp
RLLLGELFRVLPQVRQALRGARQAGRTEAQGGRAAAGKKVVERCRRRRGR
RQRRPDVPRSRGRCLRRWGGSQGTAPRGGNRGGAPLRLQGRRLRCGASRT
SCAGRTRKRLWKPSTGQSDRKPAARRTTADWEAQTSTGADTRYTPPATRV
HRSLCKP
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mRNA from alignment at Ecto-sp9_F_contig988:26030..27650-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig988.17954.1 ID=mRNA_Ecto-sp9_F_contig988.17954.1|Name=mRNA_Ecto-sp9_F_contig988.17954.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1621bp|location=Sequence derived from alignment at Ecto-sp9_F_contig988:26030..27650- (Ectocarpus species9 EcSCA_722f female)
AGGCTGCTCCTCGGAGAGCTGTTTCGAGTGCTGCCTCAAGTCCGGCAAGC
CCTGCGAGGCGCACGCCAAGCAGGTAGAACGGAAGCACAGGGAGGACGAG
CTGCTGCTGGGAAGAAGGTCGTCGAGCGGTGTCGGCGGCGGCGGGGCCGG
CGGCAGCGGCGGCCTGATGTTCCCCGGTCTCGCGGGAGGTGCCTTCGACG
ATGGGGCGGCTCCCAGGGGACCGCCCCCCGCGGGGGGAATCGAGGGGGGG
CGCCTTTAAGGGTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAG
AGCGGAGGGGAGGGTAGGGGCGGGTGTTTTCTCGATGTTTATGTTGTGCA
TGCCTTAGCTGTTTGCGTGTTCGTCTCACGTACTTGTATTCTGGCGCCAT
TCACACACCCCGGTCTTTTATGTTTGAGACGTACATACAGTGGCGGCTAC
GGTTTAAGAGAGGGTCGTGACAAGCCAGTGTTTCTCTCTTGAATCCGGTT
TTCTCTTAAAACCGTACTGTGAACTGTATGTATTTCTCATGGTCGTGACA
AGCCAGTTTGACTCTTAAATCAGTATTTTCTCTTGAATAGTCTCTCTTAA
ACCGTAGCCGCCACTGTATCAGGCAAGGGTTGTGTGTGTGATCGATAACA
AGTTGACCCTTTGTCTTGTGCAGACCCATATTTGCACGACACAAAAGCGC
GCAGTTGAAGAACCTTTTTTTGTTTATTTTTTCGCCGCTGCTGCTGCTGC
TGCTGCTGTGCCACAGCTACAGGGGAGACGGCTACGCTGTGGTGCCTCAA
GGACTTCGTGTGCGGGAAGGACACGCAAACGGCTATGGAAACCCTCAACA
GGACAGAGGTACGTACGTACTTTGTTTCACGGGGCCCCCTGTGTTGGATT
TCCGTGGGCGCGGTGGCTTGCGTGGTGGTGTTTGCTACGAAATAGAGAAA
ATAAATCAGCAATGTAAGCCTTTCCCCCAAGATGAAGATGTTCCGCGTGC
TGTACAGATGTTTTTCGTCCTTGTGTTGTCTAGGATTTTTTCTCGTGTAG
GTGTTGTTCTTCGCTGCTACTAACTATTAATTGGCGTTGATGTCAGTGCT
GATCTTGCCGTTGTTTGCACAAATTGTTCTGATCCAATACCTCCTTAACG
GTTTCACAGGGTCACAGGCGCGACCCTAGATAAGTTGCGTGTTTAAGCCA
TGACAAACGAACCTGGAGAACATCGAACAGCAGTCGCGTGTTCTTTCGCG
AGTAAAAAATAGCACGTCATGTGCTGACATCCACCCTTTCGTCGTTGAGG
GGTACCCCCACCCACGCGCCCTCGTGCCTCTCTTTCAGCTCAACATCCCC
CCCCCCGCTTTATCGAGGTCAGTGGTCTAACGACTACGGCATGCTCGGCT
ATGAGCTCTCCCCCCGGTATCGAGATCTATGATCGAACAGCATGAGTACC
CCCTCCCCCCCCCCTGTAAATCATCACCCCCCTGGGTTGCTCCAAATCCA
GCGACAGAAAGCCGGCCGCTCGGCGAACCACCGCGGACTGGGAGGCACAG
ACGTCCACCGGCGCCGATACTCGTTACACGCCACCGGCAACAAGAGTACA
CCGATCCCTCTGCAAACCCGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig988:26030..27650-

>mRNA_Ecto-sp9_F_contig988.17954.1 ID=mRNA_Ecto-sp9_F_contig988.17954.1|Name=mRNA_Ecto-sp9_F_contig988.17954.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=942bp|location=Sequence derived from alignment at Ecto-sp9_F_contig988:26030..27650- (Ectocarpus species9 EcSCA_722f female)
AGGCTGCTCCTCGGAGAGCTGTTTCGAGTGCTGCCTCAAGTCCGGCAAGC
CCTGCGAGGCGCACGCCAAGCAGGTAGAACGGAAGCACAGGGAGGACGAG
CTGCTGCTGGGAAGAAGGTCGTCGAGCGGTGTCGGCGGCGGCGGGGCCGG
CGGCAGCGGCGGCCTGATGTTCCCCGGTCTCGCGGGAGGTGCCTTCGACG
ATGGGGCGGCTCCCAGGGGACCGCCCCCCGCGGGGGGAATCGAGGGGGGG
CGCCTTTAAGGAGGCTGCTCCTCGGAGAGCTGTTTCGAGTGCTGCCTCAA
GTCCGGCAAGCCCTGCGAGGCGCACGCCAAGCAGGTAGAACGGAAGCACA
GGGAGGACGAGCTGCTGCTGGGAAGAAGGTCGTCGAGCGGTGTCGGCGGC
GGCGGGGCCGGCGGCAGCGGCGGCCTGATGTTCCCCGGTCTCGCGGGAGG
TGCCTTCGACGATGGGGCGGCTCCCAGGGGACCGCCCCCCGCGGGGGGAA
TCGAGGGGGGGCGCCTTTAAGGCTACAGGGGAGACGGCTACGCTGTGGTG
CCTCAAGGACTTCGTGTGCGGGAAGGACACGCAAACGGCTATGGAAACCC
TCAACAGGACAGAGCTACAGGGGAGACGGCTACGCTGTGGTGCCTCAAGG
ACTTCGTGTGCGGGAAGGACACGCAAACGGCTATGGAAACCCTCAACAGG
ACAGAGCGACAGAAAGCCGGCCGCTCGGCGAACCACCGCGGACTGGGAGG
CACAGACGTCCACCGGCGCCGATACTCGTTACACGCCACCGGCAACAAGA
GTACACCGATCCCTCTGCAAACCCCGACAGAAAGCCGGCCGCTCGGCGAA
CCACCGCGGACTGGGAGGCACAGACGTCCACCGGCGCCGATACTCGTTAC
ACGCCACCGGCAACAAGAGTACACCGATCCCTCTGCAAACCC
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