mRNA_Ecto-sp9_F_contig9876.17947.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9876.17947.1
Unique NamemRNA_Ecto-sp9_F_contig9876.17947.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9876.17947.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I6_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.560e-36
Identity = 82/95 (86.32%), Postives = 82/95 (86.32%), Query Frame = -1 
Query:    1 WRGEALASSRLRSRALSRISQAAQSLVSEAFSTWREGSRKAHDKAKALTALARASDRRRSDRAEMRLALRTWRRNAGGGXXXXXXXRSGDGEPRG 285
            WRGEA ASSRLRSRALSRISQAAQ LVSEAFSTWREGSR AH KAKALTALARASDRRRSDRAEMRLALRTW RNA GG       RSGDGEPRG
Sbjct:  651 WRGEARASSRLRSRALSRISQAAQGLVSEAFSTWREGSRIAHGKAKALTALARASDRRRSDRAEMRLALRTWTRNACGGDGDGGGRRSGDGEPRG 745
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BLAST of mRNA_Ecto-sp9_F_contig9876.17947.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ01_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 9.800e-15
Identity = 46/61 (75.41%), Postives = 48/61 (78.69%), Query Frame = -1 
Query:    1 REGSRKAHDKAKALTALARASDRRRSDRAEMRLALRTWRRNAGGGXXXXXXXRSGDGEPRG 183
            REGSR+AH KAKALTALARASDRR+SDRAEMRLALRTWRRNA GG       R    EPRG
Sbjct:  328 REGSRQAHGKAKALTALARASDRRQSDRAEMRLALRTWRRNACGGDGDGGGGRXXXXEPRG 388
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9876.17947.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.560e-3686.32protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.800e-1575.41protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9876contigEcto-sp9_F_contig9876:4531..4855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size325
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931080.3257785-CDS-Ecto-sp9_F_contig9876:4530..48541622931080.3257785-CDS-Ecto-sp9_F_contig9876:4530..4854Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9876 4531..4854 +
1692279023.609841-CDS-Ecto-sp9_F_contig9876:4530..48541692279023.609841-CDS-Ecto-sp9_F_contig9876:4530..4854Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9876 4531..4854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9876.17947.1prot_Ecto-sp9_F_contig9876.17947.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9876 4531..4854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9876.17947.1

>prot_Ecto-sp9_F_contig9876.17947.1 ID=prot_Ecto-sp9_F_contig9876.17947.1|Name=mRNA_Ecto-sp9_F_contig9876.17947.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=108bp
APRFSVATTPAATVTITAASVPSPRPQRQPHLRSVGPPPVGSPRQRRQRL
GLVVSLPGPFPPRRKRLRHETLGRLGDAGESARSEPRRGEGFSSPAAEDF
MQPPPSGP
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mRNA from alignment at Ecto-sp9_F_contig9876:4531..4855+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9876.17947.1 ID=mRNA_Ecto-sp9_F_contig9876.17947.1|Name=mRNA_Ecto-sp9_F_contig9876.17947.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=325bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9876:4531..4855+ (Ectocarpus species9 EcSCA_722f female)
GCCCCTCGGTTCTCCGTCGCCACTACGCCCGCCGCCACCGTCACCATCAC
CGCCGCCAGCGTTCCGTCTCCACGTCCTCAGCGCCAGCCGCATCTCCGCT
CTGTCGGACCGCCTCCGGTCGGAAGCCCTCGCCAGCGCCGTCAGCGCCTT
GGCCTTGTCGTGAGCCTTCCGGGACCCTTCCCTCCACGTCGAAAACGCCT
CCGACACGAGACTCTGGGCCGCCTGGGAGATGCGGGAGAGAGCGCGCGAT
CTGAGCCTCGACGAGGCGAGGGCTTCTCCTCGCCAGCTGCCGAAGACTTC
ATGCAACCGCCGCCGTCTGGACCTT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9876:4531..4855+

>mRNA_Ecto-sp9_F_contig9876.17947.1 ID=mRNA_Ecto-sp9_F_contig9876.17947.1|Name=mRNA_Ecto-sp9_F_contig9876.17947.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9876:4531..4855+ (Ectocarpus species9 EcSCA_722f female)
GCCCCTCGGTTCTCCGTCGCCACTACGCCCGCCGCCACCGTCACCATCAC
CGCCGCCAGCGTTCCGTCTCCACGTCCTCAGCGCCAGCCGCATCTCCGCT
CTGTCGGACCGCCTCCGGTCGGAAGCCCTCGCCAGCGCCGTCAGCGCCTT
GGCCTTGTCGTGAGCCTTCCGGGACCCTTCCCTCCACGTCGAAAACGCCT
CCGACACGAGACTCTGGGCCGCCTGGGAGATGCGGGAGAGAGCGCGCGAT
CTGAGCCTCGACGAGGCGAGGGCTTCTCCTCGCCAGCTGCCGAAGACTTC
ATGCAACCGCCGCCGTCTGGACCTGCCCCTCGGTTCTCCGTCGCCACTAC
GCCCGCCGCCACCGTCACCATCACCGCCGCCAGCGTTCCGTCTCCACGTC
CTCAGCGCCAGCCGCATCTCCGCTCTGTCGGACCGCCTCCGGTCGGAAGC
CCTCGCCAGCGCCGTCAGCGCCTTGGCCTTGTCGTGAGCCTTCCGGGACC
CTTCCCTCCACGTCGAAAACGCCTCCGACACGAGACTCTGGGCCGCCTGG
GAGATGCGGGAGAGAGCGCGCGATCTGAGCCTCGACGAGGCGAGGGCTTC
TCCTCGCCAGCTGCCGAAGACTTCATGCAACCGCCGCCGTCTGGACCT
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