mRNA_Ecto-sp9_F_contig9866.17943.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9866.17943.1
Unique NamemRNA_Ecto-sp9_F_contig9866.17943.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9866.17943.1 vs.
Match: PX (domain containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ7_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 2.640e-34
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    4 VHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDMSFVEERRKALDQYLKTLLQV 198
            VHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGD+SFVEERRKAL+QYLKTLLQ+
Sbjct:   84 VHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEERRKALEQYLKTLLQL 148
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BLAST of mRNA_Ecto-sp9_F_contig9866.17943.1 vs.
Match: PX (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS20_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.950e-32
Identity = 61/65 (93.85%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    4 VHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDMSFVEERRKALDQYLKTLLQV 198
            VHRRFRDF+ALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGD+SFVEERRKAL+QYLKTLLQ+
Sbjct:  157 VHRRFRDFHALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEERRKALEQYLKTLLQL 221
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BLAST of mRNA_Ecto-sp9_F_contig9866.17943.1 vs.
Match: PX (domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLT8_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.700e-13
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    4 VHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDMSFVEERRKALDQYLKTLLQV 198
            VHRR+R+F  L EQV +  KGHHLRSSLP  PG++ KL  +H D +FVEERR  L+  L  LL V
Sbjct:  149 VHRRYREFVCLFEQVHAAFKGHHLRSSLPELPGRQLKLLVDHNDTAFVEERRLLLETALGKLLSV 213
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BLAST of mRNA_Ecto-sp9_F_contig9866.17943.1 vs.
Match: Hypothetical (protein n=1 Tax=Bigelowiella natans TaxID=227086 RepID=A0A6T9YST3_BIGNA)

HSP 1 Score: 56.6 bits (135), Expect = 7.080e-8
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:   10 RRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDMSFVEERRKALDQYLKTLLQV 198
            +RF DF  L   V S   GH L S+LP  P K  KLWT+H + SFV++RR  L++YL  L  V
Sbjct:  151 KRFSDFEKLDHLVRSSFSGHQLMSNLPPKPSKSVKLWTDHLEKSFVQQRRGELNRYLTKLFNV 213
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BLAST of mRNA_Ecto-sp9_F_contig9866.17943.1 vs.
Match: Hypothetical (protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CUY1_9EUKA)

HSP 1 Score: 48.1 bits (113), Expect = 3.380e-5
Identity = 23/63 (36.51%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   10 RRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDMSFVEERRKALDQYLKTLLQV 198
            +RF  FY    ++    K    +  LP+FP + SK++T+H D  F+E+RRK LD+++K L ++
Sbjct:   67 KRFNAFYGFYRKLSKDFK----KCGLPKFPPRHSKVFTDHNDPVFIEQRRKKLDKFMKELFKI 125
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9866.17943.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
PX2.640e-3495.38domain containing protein (Partial) (Fragment) n=1... [more]
PX2.950e-3293.85domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
PX3.700e-1356.92domain-containing protein n=3 Tax=Monodopsidaceae ... [more]
Hypothetical7.080e-847.62protein n=1 Tax=Bigelowiella natans TaxID=227086 R... [more]
Hypothetical3.380e-536.51protein n=1 Tax=Amorphochlora amoebiformis TaxID=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9866contigEcto-sp9_F_contig9866:68..847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue3.4e-10
Seed eggNOG ortholog44056.XP_009038266.1
KEGG koko:K06236,ko:K19069
KEGG Pathwayko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
EggNOG free text desc.regulation of pentose-phosphate shunt
EggNOG OGsCOG0588@1,KOG0235@2759
EC1.1.99.18
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko01000,ko04516
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931079.8122206-CDS-Ecto-sp9_F_contig9866:67..2201622931079.8122206-CDS-Ecto-sp9_F_contig9866:67..220Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9866 68..220 -
1692279023.3833826-CDS-Ecto-sp9_F_contig9866:67..2201692279023.3833826-CDS-Ecto-sp9_F_contig9866:67..220Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9866 68..220 -
1622931079.8276815-CDS-Ecto-sp9_F_contig9866:802..8471622931079.8276815-CDS-Ecto-sp9_F_contig9866:802..847Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9866 803..847 -
1692279023.4010246-CDS-Ecto-sp9_F_contig9866:802..8471692279023.4010246-CDS-Ecto-sp9_F_contig9866:802..847Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9866 803..847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9866.17943.1prot_Ecto-sp9_F_contig9866.17943.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9866 68..847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9866.17943.1

>prot_Ecto-sp9_F_contig9866.17943.1 ID=prot_Ecto-sp9_F_contig9866.17943.1|Name=mRNA_Ecto-sp9_F_contig9866.17943.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=66bp
QVHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDMSFVE
ERRKALDQYLKTLLQV
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mRNA from alignment at Ecto-sp9_F_contig9866:68..847-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9866.17943.1 ID=mRNA_Ecto-sp9_F_contig9866.17943.1|Name=mRNA_Ecto-sp9_F_contig9866.17943.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=780bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9866:68..847- (Ectocarpus species9 EcSCA_722f female)
CAGGTTCACCGGAGGTTTCGAGACTTTTACGCGCTTCAGGAGCAGGTGAG
GGCAAGGAATGCGGCGTATTAGACTGGGAGGGGGGGGGATCGGGGATGAA
CAATGGTGCTCGGTGTATACTATATTTCTCGCTTTGTGGTGGGCTCCGTG
TATGCTTACACCTGTCTGCTCTCTTCGTTGCTGTACTGTTTCTCTCTTCG
AGGAGGATATCAATGCTTGGGGCTGTGTCCTCCTGCTCGATGACGCCATC
ATCAGCACGCACTCTTCTTAGCTGTCTCAGGGAGGGATGCATTCGAACAG
CCCTAGTTGCAGCCAAATCAACGGTGGTTGTTGTGTGTACGGGTGTTGGG
GAGAAGGGTAGGGTTTGGGGAAAAAGGAGCCAAACTCTTGAGGGGACGAG
CTTCACATGGACGAGAGCACGACATGGTTCTGTGTCTCTGACATTCTTTT
CTCTTAAACTACCATAAAATACTCCGAACTATATACATTTCTACCGGCCG
TGATAACCCACCTTTTCTCTCTGAAATCAACACGTTCACCTGCATGACCT
CTCTTGAACCGTCGCTACTACTGTCCCATCTGCGACAACAATGCGGTGCT
TGATCGATCGGGTGTGCCGTATCGCAGGTGGAGTCGCTCATGAAGGGCCA
CCACCTGCGGTCCTCCCTGCCCAGGTTCCCGGGCAAGAAGTCCAAGCTCT
GGACCAACCACGGCGATATGTCCTTTGTCGAGGAGCGAAGAAAGGCCTTG
GACCAGTACCTCAAGACTCTGCTACAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9866:68..847-

>mRNA_Ecto-sp9_F_contig9866.17943.1 ID=mRNA_Ecto-sp9_F_contig9866.17943.1|Name=mRNA_Ecto-sp9_F_contig9866.17943.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9866:68..847- (Ectocarpus species9 EcSCA_722f female)
CAGGTTCACCGGAGGTTTCGAGACTTTTACGCGCTTCAGGAGCAGCAGGT
TCACCGGAGGTTTCGAGACTTTTACGCGCTTCAGGAGCAGGTGGAGTCGC
TCATGAAGGGCCACCACCTGCGGTCCTCCCTGCCCAGGTTCCCGGGCAAG
AAGTCCAAGCTCTGGACCAACCACGGCGATATGTCCTTTGTCGAGGAGCG
AAGAAAGGCCTTGGACCAGTACCTCAAGACTCTGCTACAGGTGGTGGAGT
CGCTCATGAAGGGCCACCACCTGCGGTCCTCCCTGCCCAGGTTCCCGGGC
AAGAAGTCCAAGCTCTGGACCAACCACGGCGATATGTCCTTTGTCGAGGA
GCGAAGAAAGGCCTTGGACCAGTACCTCAAGACTCTGCTACAGGTG
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