mRNA_Ecto-sp9_F_contig9863.17941.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9863.17941.1
Unique NamemRNA_Ecto-sp9_F_contig9863.17941.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9863.17941.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G079_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 6.720e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 2 
Query:    2 SQGRAMYCASHKKDGMVHLLKESLNMEKERIA 97
            S+GRAMYCASHKKDGMVHLLKESLNMEKERIA
Sbjct:  121 SKGRAMYCASHKKDGMVHLLKESLNMEKERIA 152
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BLAST of mRNA_Ecto-sp9_F_contig9863.17941.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G084_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.420e-6
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 2 
Query:    2 SQGRAMYCASHKKDGMVHLLKESLNMEKERIARNR 106
            S GRA+YC SHKKDGMVHLLKE+ N+EKE + R R
Sbjct:  310 SMGRAVYCVSHKKDGMVHLLKEAKNLEKEELKRKR 344
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BLAST of mRNA_Ecto-sp9_F_contig9863.17941.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ6_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.610e-5
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 2 
Query:    2 SQGRAMYCASHKKDGMVHLLKESLNMEKERIARNR 106
            S GRA+YC SHKKDGMVHLLKE+ N+EK  + R R
Sbjct:   23 SMGRAVYCVSHKKDGMVHLLKEAKNLEKGSLERKR 57
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9863.17941.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
EsV-1-76.720e-1196.88n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Uncharacterized1.420e-671.43protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.610e-568.57protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9863contigEcto-sp9_F_contig9863:2713..3556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size310
Cds size294
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9863.17941.1prot_Ecto-sp9_F_contig9863.17941.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9863 2729..3556 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931079.661964-UTR-Ecto-sp9_F_contig9863:2712..27281622931079.661964-UTR-Ecto-sp9_F_contig9863:2712..2728Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9863 2713..2728 +
1692279023.3330557-UTR-Ecto-sp9_F_contig9863:2712..27281692279023.3330557-UTR-Ecto-sp9_F_contig9863:2712..2728Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9863 2713..2728 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931079.6805775-CDS-Ecto-sp9_F_contig9863:2728..28111622931079.6805775-CDS-Ecto-sp9_F_contig9863:2728..2811Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9863 2729..2811 +
1692279023.3454485-CDS-Ecto-sp9_F_contig9863:2728..28111692279023.3454485-CDS-Ecto-sp9_F_contig9863:2728..2811Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9863 2729..2811 +
1622931079.6999693-CDS-Ecto-sp9_F_contig9863:3345..35561622931079.6999693-CDS-Ecto-sp9_F_contig9863:3345..3556Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9863 3346..3556 +
1692279023.3531523-CDS-Ecto-sp9_F_contig9863:3345..35561692279023.3531523-CDS-Ecto-sp9_F_contig9863:3345..3556Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9863 3346..3556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9863.17941.1

>prot_Ecto-sp9_F_contig9863.17941.1 ID=prot_Ecto-sp9_F_contig9863.17941.1|Name=mRNA_Ecto-sp9_F_contig9863.17941.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=98bp
MYCASHKKDGMVHLLKESLNMEKERIARNRELSRKSVAERKRREAAARAN
GNANGNGNRGNEQDPAEEEEQSELGGRSKRDGEDKCDDEKEVHSGSKK
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mRNA from alignment at Ecto-sp9_F_contig9863:2713..3556+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9863.17941.1 ID=mRNA_Ecto-sp9_F_contig9863.17941.1|Name=mRNA_Ecto-sp9_F_contig9863.17941.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=844bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9863:2713..3556+ (Ectocarpus species9 EcSCA_722f female)
CTCCCAAGGGCGAGCTATGTACTGCGCCTCGCACAAGAAGGACGGAATGG
TTCACCTCCTCAAGGAGTCCCTCAACATGGAGAAGGAGCGCATCGCAAGG
TGCGGCTTACTTCCCTCCTATCACTGGTGGTATTTTCTTACCATGTTTAT
TGACGTTGTGACAGAAGAAGCTGATACCTGGTATACTCCACTGTGGCTGT
TTTATTACGTTGTGACAGCAAAAGCTGATGTATATCCTTGTGGCCAGCAA
TGGCGTGAGCTACTATCAGCGACCACTCCACTACAAACGTCATCGAGAAA
CAAAAATATACAGAACGCCCCACCACGTACAGTAAGAACTTAGCAGTTAA
GAACTTGATTAGTGATGAAGCCTTCAAGAATCCAACATCTAAGAACTTGG
CCATAAGACCAGATGCTCAGTCAGGAAGCCTATGTGTACACTAAGACCTA
CGTTGTCGCCGTGGGGGTACAGTATCCAAAAAAAAAAAAAAAAAAGTCGG
TCAGAATAAAAGGTTATTGAGTGGTGGGGAATTCTGTATGTATACTTTGT
GGTATTGACTATTTAGTGCACACATGAGCGTAGTAGCACCACCAAACAAG
AAGGTTTTGGCTGTACACCGTGTGATGGCGCAGGAACCGCGAGCTGTCCC
GCAAGTCGGTGGCGGAGCGCAAGAGGAGAGAGGCCGCGGCGAGGGCCAAC
GGCAACGCCAACGGCAACGGTAACCGTGGCAACGAACAAGACCCGGCAGA
GGAGGAAGAGCAGAGCGAGCTCGGAGGGAGGAGCAAAAGGGATGGTGAGG
ATAAGTGCGACGATGAGAAGGAGGTTCACAGCGGCAGCAAGAAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9863:2713..3556+

>mRNA_Ecto-sp9_F_contig9863.17941.1 ID=mRNA_Ecto-sp9_F_contig9863.17941.1|Name=mRNA_Ecto-sp9_F_contig9863.17941.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=588bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9863:2713..3556+ (Ectocarpus species9 EcSCA_722f female)
ATGTACTGCGCCTCGCACAAGAAGGACGGAATGGTTCACCTCCTCAAGGA
GTCCCTCAACATGGAGAAGGAGCGCATCGCAAGATGTACTGCGCCTCGCA
CAAGAAGGACGGAATGGTTCACCTCCTCAAGGAGTCCCTCAACATGGAGA
AGGAGCGCATCGCAAGGAACCGCGAGCTGTCCCGCAAGTCGGTGGCGGAG
CGCAAGAGGAGAGAGGCCGCGGCGAGGGCCAACGGCAACGCCAACGGCAA
CGGTAACCGTGGCAACGAACAAGACCCGGCAGAGGAGGAAGAGCAGAGCG
AGCTCGGAGGGAGGAGCAAAAGGGATGGTGAGGATAAGTGCGACGATGAG
AAGGAGGTTCACAGCGGCAGCAAGAAGGAACCGCGAGCTGTCCCGCAAGT
CGGTGGCGGAGCGCAAGAGGAGAGAGGCCGCGGCGAGGGCCAACGGCAAC
GCCAACGGCAACGGTAACCGTGGCAACGAACAAGACCCGGCAGAGGAGGA
AGAGCAGAGCGAGCTCGGAGGGAGGAGCAAAAGGGATGGTGAGGATAAGT
GCGACGATGAGAAGGAGGTTCACAGCGGCAGCAAGAAG
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