mRNA_Ecto-sp9_F_contig9853.17935.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9853.17935.1
Unique NamemRNA_Ecto-sp9_F_contig9853.17935.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Match: Trypsin (domain protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRJ9_ECTSI)

HSP 1 Score: 464 bits (1193), Expect = 3.990e-156
Identity = 230/254 (90.55%), Postives = 240/254 (94.49%), Query Frame = 1
Query:    1 LGGVTIAEMQADMKGHSVSVQTHEEVTMYQSSKVLTIAGQGFNSRYTRFRFANSLLEGRNFTQVVTPESATFALEEGSKWRQDAPSWPAPLILLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEIGRTLTHDFYLRGTGFTKAFPPIITFEPLADRH------APINRDDFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGGVYMMNEPVPVAVVVSHDEPHRGGIQLKPDYVTQLYQ 744
            LGGVTIAEMQADMKGHS+SV+THEEVTMYQSSKVLTIAGQGFNS YTRFRFANSL+EG+NFTQVVTPESATFALEEGSKWRQDAPSWPAPL+LLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEIGRTLTH+ YLRGTGFTKAFPPII FEPLADR       API+RDDFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGG+Y MNEPVP+AVVVS D+PHR GI LKPDYVTQLYQ
Sbjct:  153 LGGVTIAEMQADMKGHSLSVETHEEVTMYQSSKVLTIAGQGFNSSYTRFRFANSLVEGKNFTQVVTPESATFALEEGSKWRQDAPSWPAPLVLLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEIGRTLTHELYLRGTGFTKAFPPIIAFEPLADREDPEERDAPIDRDDFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGGMYTMNEPVPIAVVVSDDDPHRSGIHLKPDYVTQLYQ 406          
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRK3_ECTSI)

HSP 1 Score: 447 bits (1151), Expect = 9.860e-156
Identity = 219/249 (87.95%), Postives = 231/249 (92.77%), Query Frame = 1
Query:    1 LGGVTIAEMQADMKGHSVSVQTHEEVTMYQSSKVLTIAGQGFNSRYTRFRFANSLLEGRNFTQVVTPESATFALEEGSKWRQDAPSWPAPLILLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEIGRTLTHDFYLRGTGFTKAFPPIITFEPLADRHAPINRDDFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGGVYMMNEPVPVAVVVSHDEPHRGGIQLKPDYVTQLYQV 747
            LGGVTIAEMQAD+  HS+SV+THEEVTMYQSSKVLTIAGQGFN+  TRFRF N LLEG+NFTQ+VTPESATF LEEGSKWRQDAP+WPAPLILLAADAGDGFVPLGAT AK GRKVATI+EDPRLEPSLQEIGRTLTHDFYL GTGFTKAF PII FEPLADRHAPINRD+FMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGG+Y MNEPVPV VVVS D+PHR GI  KPDYVTQLYQ+
Sbjct:  153 LGGVTIAEMQADLNRHSLSVETHEEVTMYQSSKVLTIAGQGFNTGNTRFRFGNGLLEGKNFTQIVTPESATFTLEEGSKWRQDAPAWPAPLILLAADAGDGFVPLGATIAKTGRKVATIYEDPRLEPSLQEIGRTLTHDFYLGGTGFTKAFRPIIAFEPLADRHAPINRDEFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGGMYTMNEPVPVVVVVSDDDPHRSGIHHKPDYVTQLYQL 401          
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDJ8_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 4.330e-67
Identity = 106/124 (85.48%), Postives = 116/124 (93.55%), Query Frame = 1
Query:    1 LGGVTIAEMQADMKGHSVSVQTHEEVTMYQSSKVLTIAGQGFNSRYTRFRFANSLLEGRNFTQVVTPESATFALEEGSKWRQDAPSWPAPLILLAADAGDGFVPLGATTAKAGRKVATIFEDPR 372
            LGGVTIAEMQADM GHS+SV+ HEEVTMYQSSKVLTIAGQGFN+ YT+FRFA S++EGRN+TQVVTPESATF LEEGSKWRQDAPSWP PL+LLAA+AGDGFVPLGAT  KAGRKVATI+EDPR
Sbjct:  131 LGGVTIAEMQADMDGHSISVEPHEEVTMYQSSKVLTIAGQGFNASYTKFRFAASIVEGRNYTQVVTPESATFTLEEGSKWRQDAPSWPTPLVLLAANAGDGFVPLGAT--KAGRKVATIYEDPR 252          
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Match: Peptidase (S1 and S6, chymotrypsin/Hap n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG95_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 9.870e-60
Identity = 118/249 (47.39%), Postives = 155/249 (62.25%), Query Frame = 1
Query:    4 GGVTIAEMQADMKGHSVSVQTHEEVTMYQSSKVLTIAGQGFNSRYTRFRFANSLLEG-RNFTQVVT-PESATFALEEGSKWRQDAPSWPAPLILLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEIGRTLTHDFYLRGTGFTKAFPPIITFEPLADRHAPINRDDFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGGVYMMNEPVPVAVVVSHDEPHRGGIQLKPDYVTQLYQ 744
            GG+ IAE+QAD+  H V+VQ HE + +YQSSK   I+G GF    T+ RFAN+L  G  NFT   + PE  T  L EGSKWR++  + P  L+LLAAD+GDG+VPLG T AKAG KVAT+FEDP +E S  EI RT TH+  +RGTGF K   P++ FEP  D  +        V+VVNRT + LSL++    W      G+L ++ ++TG G+   + PV VA VVS  + H  G+Q+ P Y    YQ
Sbjct:  205 GGIVIAEVQADLDHHGVTVQGHESLDLYQSSKSFQISGSGFVDG-TKVRFANALRGGGTNFTITDSQPELLTLELAEGSKWRKNPSALPGALVLLAADSGDGWVPLGPTQAKAGSKVATVFEDPSVEASDVEIYRTHTHELQIRGTGFNKVVRPVLDFEPALDSTS------VYVEVVNRTMITLSLSTTSSQWTADENVGDLTIKGLDTGAGMVTFDSPVTVAKVVSDSDVHESGVQVYPSYGQPKYQ 446          
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Match: Peptidase (S1 and S6, chymotrypsin/Hap n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV2_9STRA)

HSP 1 Score: 188 bits (477), Expect = 5.020e-51
Identity = 114/248 (45.97%), Postives = 143/248 (57.66%), Query Frame = 1
Query:    7 GVTIAEMQADMKGHSVSVQTHEEVTMYQSSKVLTIAGQGFNSRYTRFRFANSLLEG-RNFT-QVVTPESATFALEEGSKWRQDAPSWPAPLILLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEIGRTLTHDFYLRGTGFTKAFPPIITFEPLADRHAPINRDDFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGGVYMMNEPVPVAVVVSHDEPHRGGIQLKPDYVTQLYQ 744
            G  IAE+QAD +GH V+V+TH E  +YQS+  L I G GFN   T+ RFAN L  G  N+T   VTP   T  L  GSKWR +  + P  L+LLAADAG GFV LGAT  K+GRKVAT++EDP ++ S  EI RT TH   ++G GF   F P+  FE   D   P  R D+ V VVNRT V L L +    W P    G L+V +++TG G   +  PV VA VV     H  G+ + P     +YQ
Sbjct:  210 GRIIAEVQADREGHGVTVETHVEKHIYQSTPTLEIDGVGFNPDGTQLRFANGLRGGGANYTASTVTPTRMTLDLAPGSKWRGNVDNLPGALVLLAADAGAGFVALGATAVKSGRKVATVYEDPSVKASEVEIFRTHTHTLSIQGAGFNDEFSPVFKFE--GDHLQP--RKDYYVNVVNRTHVDLMLTT-DDAWAPA--AGPLKVVSVDTGAGPVALEPPVTVAEVVDDTAEHPSGVTVTPSNTQVIYQ 450          
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG4_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 3.350e-45
Identity = 114/304 (37.50%), Postives = 151/304 (49.67%), Query Frame = 1
Query:    4 GGVTIAEMQADMKGHSVSVQTHEEVTMYQSSKVLTIAGQGFNSRYTRFRFANSLLEG-RNFTQVVT-PESATFALEEGSKWR------------------------------------QDAPSWPAPLILLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEIGRTLTHDFYLRGTGF------------------------------TKAFPPIITFEPLADRHAPINRDDFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGGVYMMNEPVPVAVVVSHDEPHRGGIQ 711
            GGV IAE+QAD+  H V+VQ HE + +YQS+K   I+G GF    T+ RFAN+L  G  NFT   + PE  T  L EGSKWR                                    ++  + P  L+LLAAD+GDG+VPLG T AKAG KVAT+FEDP +E S  EI RT TH+  +RGTG                                K F P++ FEP+ D  +        V+VVNRT + LSL++    W      G+L ++ ++TG G+   + PV VA VVS  + H  G+Q
Sbjct:   82 GGVIIAEVQADLDHHGVTVQGHESLDIYQSTKTFHISGSGFVDG-TKVRFANALRGGGTNFTITDSQPELLTLELTEGSKWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNPSALPGVLVLLAADSGDGWVPLGPTQAKAGSKVATVFEDPSVEASDVEIYRTHTHELQIRGTGLLKXGXXXXXXXXXXXXXXXXXXXXXXXXXXNKVFRPVLDFEPVLDSSS------VYVEVVNRTMITLSLSTTSAQWTAEENVGDLTIKGMDTGAGMVKFDSPVTVAKVVSDSDVHESGVQ 378          
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQB8_9STRA)

HSP 1 Score: 168 bits (425), Expect = 5.580e-44
Identity = 108/257 (42.02%), Postives = 151/257 (58.75%), Query Frame = 1
Query:    4 GGVTIAEMQADMKGHSVSVQTHEEVTMYQSSKVLTIAGQGFNSRYTRFRFANSLL-EGRNFTQVV-TPESATFALEEGSKWRQDAPSWPAPLILLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEIGRTLTHDFYLRGTGFTKA-FPPIITFEPLADRHAPINRDDFMVQVVNRTAVKLSLASFGGGWMPRG----ETGNLRVRAINTGGGVYMMNEPVPVAVVVSHDEPHRGGIQLKPDYVTQ-LYQVC 750
            GGVT+AE+QAD+  H V+VQ+  E  +YQSS  LTI G GFNS     RF N L  +G N+T +  T       L+  SKWR +  + P PL+LLA DAG GFVP+G T AK GR VAT+FEDP +  +L+ I +T +H+ Y++GTGFT+  +  ++TF+P  +     N +D  + VVNRT +K+SL   G  W+  G    +   L+V +++TG G   +   + VA V S  E H  G+ +     TQ LYQ  
Sbjct:  214 GGVTVAEVQADLGAHGVTVQSSPEQKIYQSSSELTIRGDGFNSTSNVLRFNNGLRGKGINYTAIEHTSTLMKLNLDGKSKWRANPTNLPGPLVLLAVDAGAGFVPIGPTEAKKGRTVATVFEDPTVTKNLKVIFQTHSHELYIKGTGFTRGTYNTVVTFDPPLE-----NGEDVSLLVVNRTHLKVSLIQ-GKQWISTGFQADQLNILKVMSVDTGAGPKSVGGII-VAKVKSDAEDHPSGVSVTRS--TQILYQTA 461          
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BT53_9STRA)

HSP 1 Score: 163 bits (412), Expect = 3.250e-42
Identity = 102/254 (40.16%), Postives = 144/254 (56.69%), Query Frame = 1
Query:    4 GGVTIAEMQADMKGHSVSVQTHEEVTMYQSSKVLTIAGQGFNSRYTRFRFANSLL-EGRNFTQVVTPESAT-FALEEGSKWRQDAPSWPAPLILLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEIGRTLTHDFYLRGTGFTKA--FPPIITFEPLADRHAPIN-RDDFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGGVYMMNEPVPVAVVVSHDEPHRGGIQLKPDYVTQLYQVC 750
            GG+ +AE+QAD+  H V+V++  +   YQS   L I G+GFN      RFAN L  +G N+T V   ++     L + S+WR +  + P PL+LLA DAG GFVP+G T AK GR VATIFEDP +  +++ I RT TH  ++ G+GFTKA  +   IT +P      P+   +D+ + V NRT + LSL   G  W  +   G L++  +NTGGG + +   V +A V S  E H  G+ +     T LYQ  
Sbjct:  214 GGIVVAEVQADLGAHGVTVESTPDEKFYQSQGSLIIIGEGFNETKNTLRFANGLRGKGVNYTTVEHSKTQIKLDLAKKSRWRANPANLPGPLVLLAVDAGAGFVPVGPTEAKKGRTVATIFEDPAVNKNMKTIYRTHTHQIWVTGSGFTKAPQYSTTITMDP------PLEVGEDYSLVVYNRTHMLLSLFE-GKSW--KDSEGKLKITHMNTGGGQFPVKNGVQIATVKSDAEDHPSGVTVTRTTQT-LYQTA 457          
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM60_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.040e-39
Identity = 105/271 (38.75%), Postives = 140/271 (51.66%), Query Frame = 1
Query:    4 GGVTIAEMQADMKGHSVSVQTHEEVTMYQSSKVLTIAGQGFNSRYTRFRFANSLLEG-RNFT-QVVTPESATFALEEGSKWRQDAPSWPAPLILLAADAGDGFVPLGATTAKAGRKVA---------------------------------------TIFEDPRLEPSLQEIGRTLTHDFYLRGTGFTKAFPPIITFE--PLADR-----------------HAPINRDDFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGG 636
            GG  IA++QAD++GH V+V++H    +YQS+  L + G GFN + T  RFAN+L  G  N+T   +TP   T  L  GS+WR +A + P  L+LLAADAGDG+V LGAT AKAGRK+A                                       TIFEDP ++ S  ++ RT +H   +RG GF     P+  FE   LA R                  A ++  D+   V NRT V+L LA  GGGW+P G  G+LRV A++TG G
Sbjct:  200 GGRVIAQVQADLEGHGVTVESH----IYQSTPTLELDGAGFNPKGTSLRFANALRGGGANYTASAITPTHMTLELAPGSRWRGNADNLPGALVLLAADAGDGYVALGATAAKAGRKIAMVRMLHRDDSGGPLEGLQVAAMHVVXXXXXXXXXXXXXXTIFEDPSVQASSAQLFRTHSHTLPIRGAGFNDEPAPVFYFEGVDLAPRPPVKHPRGVALRCVALPSAAMHPRDYYASVHNRTYVELMLA--GGGWLPAGRRGDLRVAALDTGAG 464          
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B105_9STRA)

HSP 1 Score: 151 bits (381), Expect = 7.920e-39
Identity = 97/255 (38.04%), Postives = 152/255 (59.61%), Query Frame = 1
Query:    4 GGVTIAEMQADMKGHSVSVQTHEEVTMYQSSK-VLTIAGQGFNS-RYTRFRFANSLL-EGRNFTQVVTPES-ATFALEEGSKWRQDAPSWPAPLILLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEIGRTLTHDFYLRGTGFTK-AFPPIITFEPLADRHAPINRDDFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGGVYMM-NEPVPVAVVVSHDEPHRGGIQLKPDYVTQLYQVC 750
            GG+T+A +Q ++  H V+VQ+  +  +YQSSK  + I+GQGF+S +    R+AN L  +G N+T V    S  +  L++GSKWR +  + P PL+LLA DAG GF+P+G T AK GR VAT+FEDP + P+ + + +T +H  ++ G+GFT+  +  ++TF P       +N +D  V V NRT + +SL + G  W     +G L+V +I++G G + + N  V +  + S  E H  G+ ++    T LYQ  
Sbjct:  234 GGITVAVVQMNLGAHGVTVQSTPDKNIYQSSKGPVQISGQGFSSDQLNVLRWANGLRGKGVNYTTVQASSSYLSLELKQGSKWRANGQNLPGPLMLLAVDAGAGFIPVGPTEAKKGRIVATVFEDPHVRPNSKVLYQTHSHQVWIVGSGFTRNQYSTVVTFSPNL-----VNGEDISVIVHNRTHILVSLFN-GKKWSEA--SGPLKVVSIDSGAGPFALPNGGVTIGTIESDAEDHPSGVTIERSTQT-LYQTA 479          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
Trypsin3.990e-15690.55domain protein n=2 Tax=Ectocarpus siliculosus TaxI... [more]
Uncharacterized9.860e-15687.95protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.330e-6785.48protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Peptidase9.870e-6047.39S1 and S6, chymotrypsin/Hap n=1 Tax=Ectocarpus sil... [more]
Peptidase5.020e-5145.97S1 and S6, chymotrypsin/Hap n=1 Tax=Tribonema minu... [more]
Uncharacterized3.350e-4537.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical5.580e-4442.02protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical3.250e-4240.16protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Uncharacterized1.040e-3938.75protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical7.920e-3938.04protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9853contigEcto-sp9_F_contig9853:413..4908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score202.6
Seed ortholog evalue2.1e-49
Seed eggNOG ortholog2880.D8LG95
EggNOG OGs2D060@1,2SCYI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_000260.1
Exons5
Model size753
Cds size729
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9853.17935.1prot_Ecto-sp9_F_contig9853.17935.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9853 413..4884 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931078.793369-CDS-Ecto-sp9_F_contig9853:412..5111622931078.793369-CDS-Ecto-sp9_F_contig9853:412..511Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9853 413..511 -
1692279022.971832-CDS-Ecto-sp9_F_contig9853:412..5111692279022.971832-CDS-Ecto-sp9_F_contig9853:412..511Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9853 413..511 -
1622931078.8125076-CDS-Ecto-sp9_F_contig9853:1199..13281622931078.8125076-CDS-Ecto-sp9_F_contig9853:1199..1328Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9853 1200..1328 -
1692279022.982651-CDS-Ecto-sp9_F_contig9853:1199..13281692279022.982651-CDS-Ecto-sp9_F_contig9853:1199..1328Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9853 1200..1328 -
1622931078.8264656-CDS-Ecto-sp9_F_contig9853:1895..20491622931078.8264656-CDS-Ecto-sp9_F_contig9853:1895..2049Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9853 1896..2049 -
1692279022.991993-CDS-Ecto-sp9_F_contig9853:1895..20491692279022.991993-CDS-Ecto-sp9_F_contig9853:1895..2049Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9853 1896..2049 -
1622931078.841398-CDS-Ecto-sp9_F_contig9853:2805..29301622931078.841398-CDS-Ecto-sp9_F_contig9853:2805..2930Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9853 2806..2930 -
1692279023.0009313-CDS-Ecto-sp9_F_contig9853:2805..29301692279023.0009313-CDS-Ecto-sp9_F_contig9853:2805..2930Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9853 2806..2930 -
1622931078.8607621-CDS-Ecto-sp9_F_contig9853:4662..48841622931078.8607621-CDS-Ecto-sp9_F_contig9853:4662..4884Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9853 4663..4884 -
1692279023.0099585-CDS-Ecto-sp9_F_contig9853:4662..48841692279023.0099585-CDS-Ecto-sp9_F_contig9853:4662..4884Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9853 4663..4884 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931078.877534-UTR-Ecto-sp9_F_contig9853:4884..49081622931078.877534-UTR-Ecto-sp9_F_contig9853:4884..4908Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9853 4885..4908 -
1692279023.0190454-UTR-Ecto-sp9_F_contig9853:4884..49081692279023.0190454-UTR-Ecto-sp9_F_contig9853:4884..4908Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9853 4885..4908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9853.17935.1

>prot_Ecto-sp9_F_contig9853.17935.1 ID=prot_Ecto-sp9_F_contig9853.17935.1|Name=mRNA_Ecto-sp9_F_contig9853.17935.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=243bp
MQADMKGHSVSVQTHEEVTMYQSSKVLTIAGQGFNSRYTRFRFANSLLEG
RNFTQVVTPESATFALEEGSKWRQDAPSWPAPLILLAADAGDGFVPLGAT
TAKAGRKVATIFEDPRLEPSLQEIGRTLTHDFYLRGTGFTKAFPPIITFE
PLADRHAPINRDDFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAIN
TGGGVYMMNEPVPVAVVVSHDEPHRGGIQLKPDYVTQLYQVC*
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mRNA from alignment at Ecto-sp9_F_contig9853:413..4908-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9853.17935.1 ID=mRNA_Ecto-sp9_F_contig9853.17935.1|Name=mRNA_Ecto-sp9_F_contig9853.17935.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4496bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9853:413..4908- (Ectocarpus species9 EcSCA_722f female)
CTTGGGGGCGTGACGATCGCCGAGATGCAAGCCGACATGAAGGGGCACTC CGTATCGGTGCAGACTCACGAAGAGGTCACCATGTACCAGTCGAGCAAGG TCTTGACCATCGCGGGGCAAGGGTTCAACAGCAGGTATACCAGGTTCCGG TTCGCCAACAGCCTCCTGGAGGGGAGGAACTTCACCCAGGTCGTGACGCC CGAGTCGGCCACGTTCGCGCTGGAGGAGGGGAGCAAGTGGCGACAGGTTC GTGATCGATAATAAGACTGTATACAGATTTGATGGCCTTTTGGTTCTCGT TGACGTTCGCTGGGCTCTGCGAGTCAAGAACGTTGGAGCTTGGGAAACGT CAATGATGGCAGCTGGCTGTTGATTCACGCGAACGCATGCTTTACATTTT CATCTTGGCATCGCACCTTGATGGCACTACTACTATGCTCTGATGAACCC ACTCCGGAGGCAGCACGCCTTGTAGATACATATGGAAGTACCTTGGTTGT GTTAACAGTCCGATCGGCCGTTGATGCGCATGTCGGCACGCGCGCTCCTG GCGAGTTTTTTGGTTGATGGAGGAAGGGCGTGTGGTCATGATCATGGGGG TTCACGTCGATGGAAGATTTGCTGTGCTTATAGGAGTGATGGGTAGGGTG GGTGTGCAACATAACATGGTCTGGTGTTGTACGTAGGGCGCAGAAGTGCA TTGCGCTCTTGACAACGGAGGCAGAGTATCGTAAGGGGCGGAGGGATGGT ATCTCCAGCGAGACCGATCTTTCAGAGCCGATTTCTTCACAACCAAGATT GTGCCTAACACCAGTGCTGGTGGTTTTGGAAACATCTGGCCGAGGGCTTT CCGCACAAGTATCGGGATTTTCCCGCACCCCCTTGGTTGTGGAGCGTTAC ATGTACAATGTACAATGTAGACCTTTGACTTTGAAAGTCGGTCTAGGGAG GGTGCTATCTCTCCGCCCCTTACGGTATGTGGCAACTGCAGACTTGAGGA CGAAGAGAGGAAGGAGACACACCTCGGCCTTTTACTTTGGCAGCTTCGCT GTACTGCACGGTGTTGGCCTTTTCTTGAACGATGATGCTAACTCTCTGGT TTGAAGGCAAGCACGATCGTTGCATTTCGTGTGCATAGGACGGGGGAAAG GCCCCCCACCAAATGACATGGCAGCAGTTATTAGCACCACCCTCCTACAA GTATGCTATGAGAAACCAGTACCTAGACAAGAGACACCAGCCTACTGCAC AGTACAGCGAGGCTCCCAAAGTAAGACTCAGGTTTCTCTCGTCCCTTCAT GTTGATGTGGTTGGCAAACTCGAACGCGGCCGGAACATGTGTGTCTGATA AGGGTTCTCTTTTCTTGGAGGAGTGGAAGAGAGTTGCACCACAAAGAGGT TAAGGTGGAGTGGGATAAAAACTGAGAACAGGGCTGGAGTCTGTCTGACT TTGGGAATAGAATGTTCTTCGAGGGTTCCTTCATTTCCAATATTTTTCGT CGTATGTTTTCGTTTCAATGATGGCAATATCAGACCCTTGCCATATTTTT GGTGTACTGCACAGCAGTATTGGCCGGGTGTGTTTTGATTTAGCTCTGGG TACTTTATATTCTTTAATTTTGGGGACGCAACATGATGACGTTCGTCCAC GTTTCCTTCATTTCGATATATTGTCAGTCGACCTCTCTCTTGGTTCAAGG CAATAAAAATGAAAATGAAAATGACTGTCTTACGTGCCCCCCCTGGTTCG ACCAGAAATACTACAGTACCGGGAGGTGCGAAAGACCAACGTTCAGAACA AATAGGATGAAGCAAAACAAAAACACACATTTGTGGACGTTCGTTTCATG TCGATATTACTTAACCAAACCGAAACACACCTGTTCTGAATTGCTGCAGC TCACATGTGAAACACTGGACATCTTTATACCTGCTTATATCGTTCATCGA AAATGTTCATATTGTTTTCTTTTTGCAGGATGCGCCGTCGTGGCCTGCGC CTCTTATCCTGCTAGCGGCGGATGCCGGGGACGGTTTCGTGCCTTTGGGA GCCACCACCGCCAAGGCGGGAAGGAAAGTGGCGACTATCTTCGAGGACCC TAGGTGAGTCTTGTCTTGTTTGTTATCTTTTTTGTTGTCCCTGTTGTTGC TGTTGTTGCTGATGTTGTCTTATTTGTGTCCCGAGGCAGCCGTCGATATC ACTGCCAGATAAGGCCGCTGCTTTTTTGAAGTCTATGTCGACGTGGGTGT CTTTACGTGTAGCAAGAAGAGCAAGACTTCAAGCTCGCATCCATCCGTGG GGATTGATTCCACCACGCGAGACGGCTTGGCCCTGCCGCGTTACGACACG CGGGCCGTAGCGTTGCATATTTACAAATTTATGGTCCTTTTCTGAAAAAT GCATCCTCAACGCACGTCAAACTGCCGATGCCTTTGGAAACTCCTTATGT CAGTCGTGCAGCTACAGCAGCGTTTGTTTGTAGGTGATTGGAATCGGTTT AGGGCTGACTACGAGGGGTGCTCGGCAGATTACTGACCTACGGCACCTTC GGGGGGGGGAGGGGGGTCCGTGGATGGCATTATGGGTATGATGGGCATGG CCCTTCGTGCCTGTTCCTCGTGTCTCTCACGATAAGCTGGTTCACGCAAA TGAATGGCGCGATGACAACATGAAAACCTCACCATGTCTCTCACTAGTCT AAGCAACAAGGGCTTCAGTCCAAGCTCCTTCTGGTTCGGCCTCATAGGAA GGAAGGAAGGAAGGAAGGAAAGCTGCTTTGCTGCACACAACACACAACAC ACAACGCACGACACCCGAACCAACCCCCCCGGCGCGCGTGCGCTACTCTT GATCTGCAGGCTGGAACCGTCTCTGCAGGAAATCGGGCGCACACTGACCC ACGACTTCTACCTCCGAGGTACCGGTTTCACGAAAGCGTTCCCGCCAATC ATAACGTTCGAGCCCCTGGCGGATCGACATGCCCCCATCAATCGAGATGA TTTCATGGTACAGGTGAGATGCTTTCATGGTACAGATGCGGGGCGACTGA CTGCTGGGGAACCGGGCTTTTCATCGCTAGCAGGCAGTGTCCTTTTTTGA TGAGATATGATCTGTATTTCATTTGCCCGGCGCGGCGTTGTGGCGTCTAA TACAAGTAGGTTTTATACCATATCTATCGAAATGAGCATGCGTGCAGGTG TCGAATTCCGTTGTTGAAACGATTGATACGTACGTGCGTGACGAGTATGT TCACCGGAGCTTGTGTGTTTGATTTGTTGCTGTCGTGCTGTTCTAGTACT TTTTGCCTCAAATAAAAAAATATGGTGCTCGGGGATCAGTCCAAACACAG GTTGGGCGGATATTGTGACACTACCTGTGGATTCATTGGGAACAAAATAC AGGTAAATTGAGACAATTCATGTACAAAAAATGAAGAACAAAGGTATCCG CGGATTGGAGCGAATCCAGGAAACGGCGGTATAGACTGACTCATCGTGTT AGATAGCTTGCCTGCGTCGCATGTTCTTATCCTCAAAGCCCTCTGCTGCT GTATGTGTTGATTTTTTTTTAACTCATCAGGTTGTCAATCGCACTGCCGT GAAGCTTTCTCTGGCAAGCTTCGGTGGAGGGTGGATGCCTCGGGGGGAAA CGGGAAACCTCCGAGTGCGGGCAATCAACACCGGCGGCGGGGTGTACATG ATGAATGAGGTATTGTATGCGTATCATACTAAATGGTATACAATATCTTA GCTTCTTCCGGGTTGGCATCATCCGGTGTTGTAGGTGATTGCGCGTGGCG TGTGTCAGTACTGTAGGGGGTCCATCAGGTTGGGCGTTCTTGTGCCATTC TCTGTCGACACAGGAGACCAACAAATCGAAGTTAAAGTTTTACAACGGAA TAAGCTATAACAAGCGGTGCGACGATACGAACGCGTGCTGTTGTGTTTGC TTGACGTCGCTTGTTTTTGTTTTGTGTGTTCGGTTTCACTGCATCAATTT AGAGGAGTGAAACGAACGTTTCTTTCTGCTTCCCCCCACGCAAATTTCAT GGAGTATGTGAAATTGAGGGTTTTCGATCCATGTTGAGCTACTGCTGGGC ATGAAATTTGTTTCGTTCATGCCTCGAAGTGAAGAGAAAGATCGCCGAAC GCTGACATGCTGTAAGCTGCCGCCGCCGCTGTTGTTGCTGTCGTTGTTTT TGCTGCTGCTGCTGCTGCTGCTGTTGATTTTTGCTGGTGCTGCTGCTGCT GTGTGGTGGTGGTGGTGTGGTGGTGTTGTTGTTGGTTTATAGTTTGCGAG GTGCTATATATGCCGTGACGCTCTCACCCTCGAGTCCACCGGTAACTCTC TCGTGTGTTTGTTGTTCTTTTGGTTGTTTGCTGTTTCTCGTCTGCAGCCC GTTCCTGTTGCCGTAGTTGTGTCCCACGACGAGCCCCATAGGGGCGGCAT CCAACTCAAGCCCGACTACGTCACGCAGCTCTACCAGGTGTGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9853:413..4908-

>mRNA_Ecto-sp9_F_contig9853.17935.1 ID=mRNA_Ecto-sp9_F_contig9853.17935.1|Name=mRNA_Ecto-sp9_F_contig9853.17935.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1458bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9853:413..4908- (Ectocarpus species9 EcSCA_722f female)
ATGCAAGCCGACATGAAGGGGCACTCCGTATCGGTGCAGACTCACGAAGA
GGTCACCATGTACCAGTCGAGCAAGGTCTTGACCATCGCGGGGCAAGGGT
TCAACAGCAGGTATACCAGGTTCCGGTTCGCCAACAGCCTCCTGGAGGGG
AGGAACTTCACCCAGGTCGTGACGCCCGAGTCGGCCACGTTCGCGCTGGA
GGAGGGGAGCAAGTGGCGACAGATGCAAGCCGACATGAAGGGGCACTCCG
TATCGGTGCAGACTCACGAAGAGGTCACCATGTACCAGTCGAGCAAGGTC
TTGACCATCGCGGGGCAAGGGTTCAACAGCAGGTATACCAGGTTCCGGTT
CGCCAACAGCCTCCTGGAGGGGAGGAACTTCACCCAGGTCGTGACGCCCG
AGTCGGCCACGTTCGCGCTGGAGGAGGGGAGCAAGTGGCGACAGGATGCG
CCGTCGTGGCCTGCGCCTCTTATCCTGCTAGCGGCGGATGCCGGGGACGG
TTTCGTGCCTTTGGGAGCCACCACCGCCAAGGCGGGAAGGAAAGTGGCGA
CTATCTTCGAGGACCCTAGGATGCGCCGTCGTGGCCTGCGCCTCTTATCC
TGCTAGCGGCGGATGCCGGGGACGGTTTCGTGCCTTTGGGAGCCACCACC
GCCAAGGCGGGAAGGAAAGTGGCGACTATCTTCGAGGACCCTAGGCTGGA
ACCGTCTCTGCAGGAAATCGGGCGCACACTGACCCACGACTTCTACCTCC
GAGGTACCGGTTTCACGAAAGCGTTCCCGCCAATCATAACGTTCGAGCCC
CTGGCGGATCGACATGCCCCCATCAATCGAGATGATTTCATGGTACAGGC
TGGAACCGTCTCTGCAGGAAATCGGGCGCACACTGACCCACGACTTCTAC
CTCCGAGGTACCGGTTTCACGAAAGCGTTCCCGCCAATCATAACGTTCGA
GCCCCTGGCGGATCGACATGCCCCCATCAATCGAGATGATTTCATGGTAC
AGGTTGTCAATCGCACTGCCGTGAAGCTTTCTCTGGCAAGCTTCGGTGGA
GGGTGGATGCCTCGGGGGGAAACGGGAAACCTCCGAGTGCGGGCAATCAA
CACCGGCGGCGGGGTGTACATGATGAATGAGGTTGTCAATCGCACTGCCG
TGAAGCTTTCTCTGGCAAGCTTCGGTGGAGGGTGGATGCCTCGGGGGGAA
ACGGGAAACCTCCGAGTGCGGGCAATCAACACCGGCGGCGGGGTGTACAT
GATGAATGAGCCCGTTCCTGTTGCCGTAGTTGTGTCCCACGACGAGCCCC
ATAGGGGCGGCATCCAACTCAAGCCCGACTACGTCACGCAGCTCTACCAG
GTGTGCTAGCCCGTTCCTGTTGCCGTAGTTGTGTCCCACGACGAGCCCCA
TAGGGGCGGCATCCAACTCAAGCCCGACTACGTCACGCAGCTCTACCAGG
TGTGCTAG
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