mRNA_Ecto-sp9_F_contig9853.17935.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Match: Trypsin (domain protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRJ9_ECTSI) HSP 1 Score: 464 bits (1193), Expect = 3.990e-156 Identity = 230/254 (90.55%), Postives = 240/254 (94.49%), Query Frame = 1
Query: 1 LGGVTIAEMQADMKGHSVSVQTHEEVTMYQSSKVLTIAGQGFNSRYTRFRFANSLLEGRNFTQVVTPESATFALEEGSKWRQDAPSWPAPLILLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEIGRTLTHDFYLRGTGFTKAFPPIITFEPLADRH------APINRDDFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGGVYMMNEPVPVAVVVSHDEPHRGGIQLKPDYVTQLYQ 744
LGGVTIAEMQADMKGHS+SV+THEEVTMYQSSKVLTIAGQGFNS YTRFRFANSL+EG+NFTQVVTPESATFALEEGSKWRQDAPSWPAPL+LLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEIGRTLTH+ YLRGTGFTKAFPPII FEPLADR API+RDDFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGG+Y MNEPVP+AVVVS D+PHR GI LKPDYVTQLYQ
Sbjct: 153 LGGVTIAEMQADMKGHSLSVETHEEVTMYQSSKVLTIAGQGFNSSYTRFRFANSLVEGKNFTQVVTPESATFALEEGSKWRQDAPSWPAPLVLLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEIGRTLTHELYLRGTGFTKAFPPIIAFEPLADREDPEERDAPIDRDDFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGGMYTMNEPVPIAVVVSDDDPHRSGIHLKPDYVTQLYQ 406
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRK3_ECTSI) HSP 1 Score: 447 bits (1151), Expect = 9.860e-156 Identity = 219/249 (87.95%), Postives = 231/249 (92.77%), Query Frame = 1
Query: 1 LGGVTIAEMQADMKGHSVSVQTHEEVTMYQSSKVLTIAGQGFNSRYTRFRFANSLLEGRNFTQVVTPESATFALEEGSKWRQDAPSWPAPLILLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEIGRTLTHDFYLRGTGFTKAFPPIITFEPLADRHAPINRDDFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGGVYMMNEPVPVAVVVSHDEPHRGGIQLKPDYVTQLYQV 747
LGGVTIAEMQAD+ HS+SV+THEEVTMYQSSKVLTIAGQGFN+ TRFRF N LLEG+NFTQ+VTPESATF LEEGSKWRQDAP+WPAPLILLAADAGDGFVPLGAT AK GRKVATI+EDPRLEPSLQEIGRTLTHDFYL GTGFTKAF PII FEPLADRHAPINRD+FMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGG+Y MNEPVPV VVVS D+PHR GI KPDYVTQLYQ+
Sbjct: 153 LGGVTIAEMQADLNRHSLSVETHEEVTMYQSSKVLTIAGQGFNTGNTRFRFGNGLLEGKNFTQIVTPESATFTLEEGSKWRQDAPAWPAPLILLAADAGDGFVPLGATIAKTGRKVATIYEDPRLEPSLQEIGRTLTHDFYLGGTGFTKAFRPIIAFEPLADRHAPINRDEFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGGMYTMNEPVPVVVVVSDDDPHRSGIHHKPDYVTQLYQL 401
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDJ8_9PHAE) HSP 1 Score: 217 bits (552), Expect = 4.330e-67 Identity = 106/124 (85.48%), Postives = 116/124 (93.55%), Query Frame = 1
Query: 1 LGGVTIAEMQADMKGHSVSVQTHEEVTMYQSSKVLTIAGQGFNSRYTRFRFANSLLEGRNFTQVVTPESATFALEEGSKWRQDAPSWPAPLILLAADAGDGFVPLGATTAKAGRKVATIFEDPR 372
LGGVTIAEMQADM GHS+SV+ HEEVTMYQSSKVLTIAGQGFN+ YT+FRFA S++EGRN+TQVVTPESATF LEEGSKWRQDAPSWP PL+LLAA+AGDGFVPLGAT KAGRKVATI+EDPR
Sbjct: 131 LGGVTIAEMQADMDGHSISVEPHEEVTMYQSSKVLTIAGQGFNASYTKFRFAASIVEGRNYTQVVTPESATFTLEEGSKWRQDAPSWPTPLVLLAANAGDGFVPLGAT--KAGRKVATIYEDPR 252
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Match: Peptidase (S1 and S6, chymotrypsin/Hap n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG95_ECTSI) HSP 1 Score: 212 bits (540), Expect = 9.870e-60 Identity = 118/249 (47.39%), Postives = 155/249 (62.25%), Query Frame = 1
Query: 4 GGVTIAEMQADMKGHSVSVQTHEEVTMYQSSKVLTIAGQGFNSRYTRFRFANSLLEG-RNFTQVVT-PESATFALEEGSKWRQDAPSWPAPLILLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEIGRTLTHDFYLRGTGFTKAFPPIITFEPLADRHAPINRDDFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGGVYMMNEPVPVAVVVSHDEPHRGGIQLKPDYVTQLYQ 744
GG+ IAE+QAD+ H V+VQ HE + +YQSSK I+G GF T+ RFAN+L G NFT + PE T L EGSKWR++ + P L+LLAAD+GDG+VPLG T AKAG KVAT+FEDP +E S EI RT TH+ +RGTGF K P++ FEP D + V+VVNRT + LSL++ W G+L ++ ++TG G+ + PV VA VVS + H G+Q+ P Y YQ
Sbjct: 205 GGIVIAEVQADLDHHGVTVQGHESLDLYQSSKSFQISGSGFVDG-TKVRFANALRGGGTNFTITDSQPELLTLELAEGSKWRKNPSALPGALVLLAADSGDGWVPLGPTQAKAGSKVATVFEDPSVEASDVEIYRTHTHELQIRGTGFNKVVRPVLDFEPALDSTS------VYVEVVNRTMITLSLSTTSSQWTADENVGDLTIKGLDTGAGMVTFDSPVTVAKVVSDSDVHESGVQVYPSYGQPKYQ 446
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Match: Peptidase (S1 and S6, chymotrypsin/Hap n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV2_9STRA) HSP 1 Score: 188 bits (477), Expect = 5.020e-51 Identity = 114/248 (45.97%), Postives = 143/248 (57.66%), Query Frame = 1
Query: 7 GVTIAEMQADMKGHSVSVQTHEEVTMYQSSKVLTIAGQGFNSRYTRFRFANSLLEG-RNFT-QVVTPESATFALEEGSKWRQDAPSWPAPLILLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEIGRTLTHDFYLRGTGFTKAFPPIITFEPLADRHAPINRDDFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGGVYMMNEPVPVAVVVSHDEPHRGGIQLKPDYVTQLYQ 744
G IAE+QAD +GH V+V+TH E +YQS+ L I G GFN T+ RFAN L G N+T VTP T L GSKWR + + P L+LLAADAG GFV LGAT K+GRKVAT++EDP ++ S EI RT TH ++G GF F P+ FE D P R D+ V VVNRT V L L + W P G L+V +++TG G + PV VA VV H G+ + P +YQ
Sbjct: 210 GRIIAEVQADREGHGVTVETHVEKHIYQSTPTLEIDGVGFNPDGTQLRFANGLRGGGANYTASTVTPTRMTLDLAPGSKWRGNVDNLPGALVLLAADAGAGFVALGATAVKSGRKVATVYEDPSVKASEVEIFRTHTHTLSIQGAGFNDEFSPVFKFE--GDHLQP--RKDYYVNVVNRTHVDLMLTT-DDAWAPA--AGPLKVVSVDTGAGPVALEPPVTVAEVVDDTAEHPSGVTVTPSNTQVIYQ 450
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG4_9PHAE) HSP 1 Score: 171 bits (434), Expect = 3.350e-45 Identity = 114/304 (37.50%), Postives = 151/304 (49.67%), Query Frame = 1
Query: 4 GGVTIAEMQADMKGHSVSVQTHEEVTMYQSSKVLTIAGQGFNSRYTRFRFANSLLEG-RNFTQVVT-PESATFALEEGSKWR------------------------------------QDAPSWPAPLILLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEIGRTLTHDFYLRGTGF------------------------------TKAFPPIITFEPLADRHAPINRDDFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGGVYMMNEPVPVAVVVSHDEPHRGGIQ 711
GGV IAE+QAD+ H V+VQ HE + +YQS+K I+G GF T+ RFAN+L G NFT + PE T L EGSKWR ++ + P L+LLAAD+GDG+VPLG T AKAG KVAT+FEDP +E S EI RT TH+ +RGTG K F P++ FEP+ D + V+VVNRT + LSL++ W G+L ++ ++TG G+ + PV VA VVS + H G+Q
Sbjct: 82 GGVIIAEVQADLDHHGVTVQGHESLDIYQSTKTFHISGSGFVDG-TKVRFANALRGGGTNFTITDSQPELLTLELTEGSKWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNPSALPGVLVLLAADSGDGWVPLGPTQAKAGSKVATVFEDPSVEASDVEIYRTHTHELQIRGTGLLKXGXXXXXXXXXXXXXXXXXXXXXXXXXXNKVFRPVLDFEPVLDSSS------VYVEVVNRTMITLSLSTTSAQWTAEENVGDLTIKGMDTGAGMVKFDSPVTVAKVVSDSDVHESGVQ 378
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQB8_9STRA) HSP 1 Score: 168 bits (425), Expect = 5.580e-44 Identity = 108/257 (42.02%), Postives = 151/257 (58.75%), Query Frame = 1
Query: 4 GGVTIAEMQADMKGHSVSVQTHEEVTMYQSSKVLTIAGQGFNSRYTRFRFANSLL-EGRNFTQVV-TPESATFALEEGSKWRQDAPSWPAPLILLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEIGRTLTHDFYLRGTGFTKA-FPPIITFEPLADRHAPINRDDFMVQVVNRTAVKLSLASFGGGWMPRG----ETGNLRVRAINTGGGVYMMNEPVPVAVVVSHDEPHRGGIQLKPDYVTQ-LYQVC 750
GGVT+AE+QAD+ H V+VQ+ E +YQSS LTI G GFNS RF N L +G N+T + T L+ SKWR + + P PL+LLA DAG GFVP+G T AK GR VAT+FEDP + +L+ I +T +H+ Y++GTGFT+ + ++TF+P + N +D + VVNRT +K+SL G W+ G + L+V +++TG G + + VA V S E H G+ + TQ LYQ
Sbjct: 214 GGVTVAEVQADLGAHGVTVQSSPEQKIYQSSSELTIRGDGFNSTSNVLRFNNGLRGKGINYTAIEHTSTLMKLNLDGKSKWRANPTNLPGPLVLLAVDAGAGFVPIGPTEAKKGRTVATVFEDPTVTKNLKVIFQTHSHELYIKGTGFTRGTYNTVVTFDPPLE-----NGEDVSLLVVNRTHLKVSLIQ-GKQWISTGFQADQLNILKVMSVDTGAGPKSVGGII-VAKVKSDAEDHPSGVSVTRS--TQILYQTA 461
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BT53_9STRA) HSP 1 Score: 163 bits (412), Expect = 3.250e-42 Identity = 102/254 (40.16%), Postives = 144/254 (56.69%), Query Frame = 1
Query: 4 GGVTIAEMQADMKGHSVSVQTHEEVTMYQSSKVLTIAGQGFNSRYTRFRFANSLL-EGRNFTQVVTPESAT-FALEEGSKWRQDAPSWPAPLILLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEIGRTLTHDFYLRGTGFTKA--FPPIITFEPLADRHAPIN-RDDFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGGVYMMNEPVPVAVVVSHDEPHRGGIQLKPDYVTQLYQVC 750
GG+ +AE+QAD+ H V+V++ + YQS L I G+GFN RFAN L +G N+T V ++ L + S+WR + + P PL+LLA DAG GFVP+G T AK GR VATIFEDP + +++ I RT TH ++ G+GFTKA + IT +P P+ +D+ + V NRT + LSL G W + G L++ +NTGGG + + V +A V S E H G+ + T LYQ
Sbjct: 214 GGIVVAEVQADLGAHGVTVESTPDEKFYQSQGSLIIIGEGFNETKNTLRFANGLRGKGVNYTTVEHSKTQIKLDLAKKSRWRANPANLPGPLVLLAVDAGAGFVPVGPTEAKKGRTVATIFEDPAVNKNMKTIYRTHTHQIWVTGSGFTKAPQYSTTITMDP------PLEVGEDYSLVVYNRTHMLLSLFE-GKSW--KDSEGKLKITHMNTGGGQFPVKNGVQIATVKSDAEDHPSGVTVTRTTQT-LYQTA 457
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM60_9STRA) HSP 1 Score: 156 bits (394), Expect = 1.040e-39 Identity = 105/271 (38.75%), Postives = 140/271 (51.66%), Query Frame = 1
Query: 4 GGVTIAEMQADMKGHSVSVQTHEEVTMYQSSKVLTIAGQGFNSRYTRFRFANSLLEG-RNFT-QVVTPESATFALEEGSKWRQDAPSWPAPLILLAADAGDGFVPLGATTAKAGRKVA---------------------------------------TIFEDPRLEPSLQEIGRTLTHDFYLRGTGFTKAFPPIITFE--PLADR-----------------HAPINRDDFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGG 636
GG IA++QAD++GH V+V++H +YQS+ L + G GFN + T RFAN+L G N+T +TP T L GS+WR +A + P L+LLAADAGDG+V LGAT AKAGRK+A TIFEDP ++ S ++ RT +H +RG GF P+ FE LA R A ++ D+ V NRT V+L LA GGGW+P G G+LRV A++TG G
Sbjct: 200 GGRVIAQVQADLEGHGVTVESH----IYQSTPTLELDGAGFNPKGTSLRFANALRGGGANYTASAITPTHMTLELAPGSRWRGNADNLPGALVLLAADAGDGYVALGATAAKAGRKIAMVRMLHRDDSGGPLEGLQVAAMHVVXXXXXXXXXXXXXXTIFEDPSVQASSAQLFRTHSHTLPIRGAGFNDEPAPVFYFEGVDLAPRPPVKHPRGVALRCVALPSAAMHPRDYYASVHNRTYVELMLA--GGGWLPAGRRGDLRVAALDTGAG 464
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B105_9STRA) HSP 1 Score: 151 bits (381), Expect = 7.920e-39 Identity = 97/255 (38.04%), Postives = 152/255 (59.61%), Query Frame = 1
Query: 4 GGVTIAEMQADMKGHSVSVQTHEEVTMYQSSK-VLTIAGQGFNS-RYTRFRFANSLL-EGRNFTQVVTPES-ATFALEEGSKWRQDAPSWPAPLILLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEIGRTLTHDFYLRGTGFTK-AFPPIITFEPLADRHAPINRDDFMVQVVNRTAVKLSLASFGGGWMPRGETGNLRVRAINTGGGVYMM-NEPVPVAVVVSHDEPHRGGIQLKPDYVTQLYQVC 750
GG+T+A +Q ++ H V+VQ+ + +YQSSK + I+GQGF+S + R+AN L +G N+T V S + L++GSKWR + + P PL+LLA DAG GF+P+G T AK GR VAT+FEDP + P+ + + +T +H ++ G+GFT+ + ++TF P +N +D V V NRT + +SL + G W +G L+V +I++G G + + N V + + S E H G+ ++ T LYQ
Sbjct: 234 GGITVAVVQMNLGAHGVTVQSTPDKNIYQSSKGPVQISGQGFSSDQLNVLRWANGLRGKGVNYTTVQASSSYLSLELKQGSKWRANGQNLPGPLMLLAVDAGAGFIPVGPTEAKKGRIVATVFEDPHVRPNSKVLYQTHSHQVWIVGSGFTRNQYSTVVTFSPNL-----VNGEDISVIVHNRTHILVSLFN-GKKWSEA--SGPLKVVSIDSGAGPFALPNGGVTIGTIESDAEDHPSGVTIERSTQT-LYQTA 479 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9853.17935.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9853.17935.1 >prot_Ecto-sp9_F_contig9853.17935.1 ID=prot_Ecto-sp9_F_contig9853.17935.1|Name=mRNA_Ecto-sp9_F_contig9853.17935.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=243bp MQADMKGHSVSVQTHEEVTMYQSSKVLTIAGQGFNSRYTRFRFANSLLEGback to top mRNA from alignment at Ecto-sp9_F_contig9853:413..4908- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9853.17935.1 ID=mRNA_Ecto-sp9_F_contig9853.17935.1|Name=mRNA_Ecto-sp9_F_contig9853.17935.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4496bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9853:413..4908- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9853:413..4908- >mRNA_Ecto-sp9_F_contig9853.17935.1 ID=mRNA_Ecto-sp9_F_contig9853.17935.1|Name=mRNA_Ecto-sp9_F_contig9853.17935.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1458bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9853:413..4908- (Ectocarpus species9 EcSCA_722f female)back to top |