mRNA_Ecto-sp9_F_contig9835.17919.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9835.17919.1
Unique NamemRNA_Ecto-sp9_F_contig9835.17919.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9835.17919.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9835contigEcto-sp9_F_contig9835:213..650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size439
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931077.132558-CDS-Ecto-sp9_F_contig9835:212..6261622931077.132558-CDS-Ecto-sp9_F_contig9835:212..626Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9835 213..626 +
1692279022.1341403-CDS-Ecto-sp9_F_contig9835:212..6261692279022.1341403-CDS-Ecto-sp9_F_contig9835:212..626Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9835 213..626 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931077.1486938-UTR-Ecto-sp9_F_contig9835:626..6501622931077.1486938-UTR-Ecto-sp9_F_contig9835:626..650Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9835 627..650 +
1692279022.1437995-UTR-Ecto-sp9_F_contig9835:626..6501692279022.1437995-UTR-Ecto-sp9_F_contig9835:626..650Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9835 627..650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9835.17919.1prot_Ecto-sp9_F_contig9835.17919.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9835 213..626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9835.17919.1

>prot_Ecto-sp9_F_contig9835.17919.1 ID=prot_Ecto-sp9_F_contig9835.17919.1|Name=mRNA_Ecto-sp9_F_contig9835.17919.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=138bp
PPPGRVFPCGKARGPADRACPGGRPWRRSWRGTPGCPGSAPGWAARGARA
RRSSAAPAGCGGRTPPCRRCLPRRPAARRPRRCPRWAPPPPWRRPPPLSL
PRTCRVTPPPPQSRGPRATAAAPEASLRRTSQRRPSC*
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mRNA from alignment at Ecto-sp9_F_contig9835:213..650+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9835.17919.1 ID=mRNA_Ecto-sp9_F_contig9835.17919.1|Name=mRNA_Ecto-sp9_F_contig9835.17919.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=438bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9835:213..650+ (Ectocarpus species9 EcSCA_722f female)
CCGCCACCGGGGCGAGTCTTTCCCTGCGGCAAGGCGAGGGGACCCGCAGA
TCGCGCTTGTCCGGGGGGGCGCCCATGGCGTCGATCATGGCGCGGTACCC
CAGGCTGTCCCGGATCGGCTCCGGGGTGGGCAGCCCGTGGCGCACGCGCG
CGTCGTAGCAGTGCCGCGCCAGCCGGATGCGGAGGGCGTACTCCTCCCTG
CCGGAGATGTTTGCCGCGAAGGCCAGCAGCAAGGCGGCCGCGGCGATGTC
CTCGCTGGGCACCGCCGCCGCCGTGGCGTCGTCCTCCGCCGTTGTCGTTA
CCCCGCACATGTCGAGTGACGCCTCCGCCACCGCAAAGTAGGGGTCCACG
TGCGACGGCGGCTGCCCCAGAAGCATCGCTCCGACGGACATCGCAGAGAA
GACCGAGCTGTTGATCGCGTTCACCGTCCTCTGACTCT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9835:213..650+

>mRNA_Ecto-sp9_F_contig9835.17919.1 ID=mRNA_Ecto-sp9_F_contig9835.17919.1|Name=mRNA_Ecto-sp9_F_contig9835.17919.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=828bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9835:213..650+ (Ectocarpus species9 EcSCA_722f female)
CCGCCACCGGGGCGAGTCTTTCCCTGCGGCAAGGCGAGGGGACCCGCAGA
TCGCGCTTGTCCGGGGGGGCGCCCATGGCGTCGATCATGGCGCGGTACCC
CAGGCTGTCCCGGATCGGCTCCGGGGTGGGCAGCCCGTGGCGCACGCGCG
CGTCGTAGCAGTGCCGCGCCAGCCGGATGCGGAGGGCGTACTCCTCCCTG
CCGGAGATGTTTGCCGCGAAGGCCAGCAGCAAGGCGGCCGCGGCGATGTC
CTCGCTGGGCACCGCCGCCGCCGTGGCGTCGTCCTCCGCCGTTGTCGTTA
CCCCGCACATGTCGAGTGACGCCTCCGCCACCGCAAAGTAGGGGTCCACG
TGCGACGGCGGCTGCCCCAGAAGCATCGCTCCGACGGACATCGCAGAGAA
GACCGAGCTGTTGACCGCCACCGGGGCGAGTCTTTCCCTGCGGCAAGGCG
AGGGGACCCGCAGATCGCGCTTGTCCGGGGGGGCGCCCATGGCGTCGATC
ATGGCGCGGTACCCCAGGCTGTCCCGGATCGGCTCCGGGGTGGGCAGCCC
GTGGCGCACGCGCGCGTCGTAGCAGTGCCGCGCCAGCCGGATGCGGAGGG
CGTACTCCTCCCTGCCGGAGATGTTTGCCGCGAAGGCCAGCAGCAAGGCG
GCCGCGGCGATGTCCTCGCTGGGCACCGCCGCCGCCGTGGCGTCGTCCTC
CGCCGTTGTCGTTACCCCGCACATGTCGAGTGACGCCTCCGCCACCGCAA
AGTAGGGGTCCACGTGCGACGGCGGCTGCCCCAGAAGCATCGCTCCGACG
GACATCGCAGAGAAGACCGAGCTGTTGA
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