mRNA_Ecto-sp9_F_contig9833.17917.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9833.17917.1
Unique NamemRNA_Ecto-sp9_F_contig9833.17917.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9833.17917.1 vs.
Match: Pol1-like (DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ5_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 4.610e-31
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 GPVGHGRVTCISIYGGPELDFGEGPGKILWVDNLGAAAGTLEEFLPFFASEKHKKV 168
            GPVGHGRVTCISIYGGP+LDFGEGPGKILWVDNLGAAAGTLEEFLPFFASEKHKKV
Sbjct:  664 GPVGHGRVTCISIYGGPDLDFGEGPGKILWVDNLGAAAGTLEEFLPFFASEKHKKV 719
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BLAST of mRNA_Ecto-sp9_F_contig9833.17917.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D2_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.600e-30
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 GPVGHGRVTCISIYGGPELDFGEGPGKILWVDNLGAAAGTLEEFLPFFASEKHKKV 168
            GPVGHGRVTCISIYGGPELDFGEGPGKILWVDNLG AAGTLEEFLPFFASE+HKKV
Sbjct:  794 GPVGHGRVTCISIYGGPELDFGEGPGKILWVDNLGGAAGTLEEFLPFFASERHKKV 849
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BLAST of mRNA_Ecto-sp9_F_contig9833.17917.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S0D7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.740e-18
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 GPVGHGRVTCISIYGGPELDFGEGPGKILWVDNLGAAAGTLEEFLPFFASEKHKKV 168
            GPVG+G VTCIS+Y GP++D+GEGPG +LWVDNL  A G L+EF  F  S +H+KV
Sbjct:  225 GPVGNGIVTCISVYSGPDMDYGEGPGTVLWVDNLDGAYGVLQEFKEFLESPQHQKV 280
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BLAST of mRNA_Ecto-sp9_F_contig9833.17917.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1Y3_HETAK)

HSP 1 Score: 79.3 bits (194), Expect = 8.240e-17
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 GPVGHGRVTCISIYGGPELDFG--EGPGKILWVDNLGAAAGTLEEFLPFFASEKHKKV 168
            GPVGHGRVTC+SIY GP +DFG   GPG  LWV+NLG + G L+ F P+F  E  KKV
Sbjct:   62 GPVGHGRVTCVSIYSGPGVDFGLGHGPGAALWVENLGQSEGLLDMFKPWFEDESCKKV 119
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BLAST of mRNA_Ecto-sp9_F_contig9833.17917.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FQ52_9EUGL)

HSP 1 Score: 77.8 bits (190), Expect = 1.620e-16
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 GPVGHGRVTCISIYGGPELDFGEGPGKILWVDNLGAAAGTLEEFLPFFASEKHKK 165
            GPVG+GRVTC+SIY GP++DFG G GK LW+DNL  A G L+EF  +F   + +K
Sbjct:   27 GPVGNGRVTCVSIYSGPDIDFGTGKGKTLWIDNLDEAEGVLQEFKEWFEDPQARK 81
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BLAST of mRNA_Ecto-sp9_F_contig9833.17917.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XY06_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.020e-15
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 GPVGHGRVTCISIYGGPELDFGEGPGKILWVDNLGAAAGTLEEFLPFFASEKHKKV 168
            GPVG+G VTC+SIY GP++DFG+GPG  LW++N G + G L+EF  +F   ++KKV
Sbjct:   85 GPVGNGEVTCVSIYSGPDVDFGDGPGTALWIENDGESRGLLDEFKAWFEDPRYKKV 140
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BLAST of mRNA_Ecto-sp9_F_contig9833.17917.1 vs.
Match: 3'-5' (exonuclease domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BT88_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.390e-15
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 GPVGHGRVTCISIYGGPELDFGEGPGKILWVDNLGAAAGTLEEFLPFFASEKHKKV 168
            GPVG+G VTC+SIY GP++DFG GP   +WVDNL +A GTLE F  F  S+ HKKV
Sbjct:   92 GPVGNGNVTCLSIYSGPDVDFGNGP--YVWVDNLDSADGTLEYFRGFLESKTHKKV 145
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BLAST of mRNA_Ecto-sp9_F_contig9833.17917.1 vs.
Match: 3'-5' (exonuclease domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AN87_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.760e-15
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 GPVGHGRVTCISIYGGPELDFGEGPGKILWVDNLGAAAGTLEEFLPFFASEKHKKV 168
            GPVG+G VTC+SIY GP++DFG GP   +WVDNL +A GTLE F  F  S+ HKKV
Sbjct:  128 GPVGNGNVTCLSIYSGPDVDFGNGP--YVWVDNLDSADGTLEYFRGFLESKTHKKV 181
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BLAST of mRNA_Ecto-sp9_F_contig9833.17917.1 vs.
Match: Autophagy-related (protein 9 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7WPI9_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.540e-15
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 GPVGHGRVTCISIYGGPELDFGEGPGKILWVDNLGAAAGTLEEFLPFFASEKHKKV 168
            GPVG+G VTC+SIY GP++DFG GP   +WVDNL +A GTLE F  F  S+ HKKV
Sbjct:   44 GPVGNGNVTCLSIYSGPDVDFGNGP--YVWVDNLDSADGTLEYFRGFLESKTHKKV 97
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9833.17917.1 vs.
Match: 3'-5' (exonuclease domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DK49_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 5.630e-15
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 GPVGHGRVTCISIYGGPELDFGEGPGKILWVDNLGAAAGTLEEFLPFFASEKHKKV 168
            GPVG+G VTC+SIY GP++DFG GP   +WVDNL +A GTLE F  F  S+ HKKV
Sbjct:  363 GPVGNGNVTCLSIYSGPDVDFGNGP--YVWVDNLDSADGTLEYFRGFLESKTHKKV 416
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9833.17917.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Pol1-like4.610e-3198.21DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
Uncharacterized1.600e-3096.43protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical5.740e-1862.50protein (Fragment) n=1 Tax=Eucampia antarctica Tax... [more]
Hypothetical8.240e-1762.07protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Hypothetical1.620e-1658.18protein (Fragment) n=1 Tax=Eutreptiella gymnastica... [more]
Hypothetical1.020e-1555.36protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
3'-5'1.390e-1562.50exonuclease domain-containing protein n=1 Tax=Apha... [more]
3'-5'1.760e-1562.50exonuclease domain-containing protein n=1 Tax=Apha... [more]
Autophagy-related4.540e-1562.50protein 9 n=1 Tax=Aphanomyces astaci TaxID=112090 ... [more]
3'-5'5.630e-1562.50exonuclease domain-containing protein n=5 Tax=Apha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9833contigEcto-sp9_F_contig9833:128..295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue1.8e-25
Seed eggNOG ortholog2880.D8LMQ5
KEGG rclassRC02795
KEGG koko:K02335
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
GOsGO:0000002,GO:0003674,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009657,GO:0009987,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0032042,GO:0033258,GO:0033259,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.plastid DNA replication
EggNOG OGsCOG0749@1,KOG0950@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931076.9770143-CDS-Ecto-sp9_F_contig9833:127..2951622931076.9770143-CDS-Ecto-sp9_F_contig9833:127..295Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9833 128..295 +
1692279022.0587387-CDS-Ecto-sp9_F_contig9833:127..2951692279022.0587387-CDS-Ecto-sp9_F_contig9833:127..295Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9833 128..295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9833.17917.1prot_Ecto-sp9_F_contig9833.17917.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9833 128..295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9833.17917.1

>prot_Ecto-sp9_F_contig9833.17917.1 ID=prot_Ecto-sp9_F_contig9833.17917.1|Name=mRNA_Ecto-sp9_F_contig9833.17917.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=56bp
GPVGHGRVTCISIYGGPELDFGEGPGKILWVDNLGAAAGTLEEFLPFFAS
EKHKKV
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mRNA from alignment at Ecto-sp9_F_contig9833:128..295+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9833.17917.1 ID=mRNA_Ecto-sp9_F_contig9833.17917.1|Name=mRNA_Ecto-sp9_F_contig9833.17917.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9833:128..295+ (Ectocarpus species9 EcSCA_722f female)
GGCCCCGTCGGGCACGGGCGCGTGACGTGCATCTCGATCTACGGGGGGCC
GGAGCTGGACTTCGGGGAAGGTCCCGGGAAGATCTTGTGGGTGGACAACC
TGGGGGCGGCGGCGGGGACGCTGGAGGAGTTCCTCCCCTTCTTCGCGAGC
GAGAAGCACAAGAAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9833:128..295+

>mRNA_Ecto-sp9_F_contig9833.17917.1 ID=mRNA_Ecto-sp9_F_contig9833.17917.1|Name=mRNA_Ecto-sp9_F_contig9833.17917.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9833:128..295+ (Ectocarpus species9 EcSCA_722f female)
GGCCCCGTCGGGCACGGGCGCGTGACGTGCATCTCGATCTACGGGGGGCC
GGAGCTGGACTTCGGGGAAGGTCCCGGGAAGATCTTGTGGGTGGACAACC
TGGGGGCGGCGGCGGGGACGCTGGAGGAGTTCCTCCCCTTCTTCGCGAGC
GAGAAGCACAAGAAGGTAGGCCCCGTCGGGCACGGGCGCGTGACGTGCAT
CTCGATCTACGGGGGGCCGGAGCTGGACTTCGGGGAAGGTCCCGGGAAGA
TCTTGTGGGTGGACAACCTGGGGGCGGCGGCGGGGACGCTGGAGGAGTTC
CTCCCCTTCTTCGCGAGCGAGAAGCACAAGAAGGTA
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