mRNA_Ecto-sp9_F_contig9829.17913.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9829.17913.1
Unique NamemRNA_Ecto-sp9_F_contig9829.17913.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9829.17913.1 vs.
Match: Glutaredoxin (n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQR0_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 9.020e-69
Identity = 111/119 (93.28%), Postives = 117/119 (98.32%), Query Frame = 1
Query:    1 LYVKGVLVGGVDEVSKLAEDGDLKNSLASAAGVEPSKNTAGAVGGGKSVEERCKNITKRAETMVFMKGTPDTPRCGFSRTLVGLLREENIAFESFDILEDQEVRQVLKDLSNWPTYPQV 357
            LYVKGVLVGGVDEVSKLAEDGDLKNSLA+AAGV+PSKNTAGAVGGGKSVEERCK+I +RAETMVFMKGTPD PRCGFSRTLVGLLREENIAFESFDILEDQEVR+VLKDLSNWPTYPQ+
Sbjct:  201 LYVKGVLVGGVDEVSKLAEDGDLKNSLANAAGVKPSKNTAGAVGGGKSVEERCKDIMRRAETMVFMKGTPDAPRCGFSRTLVGLLREENIAFESFDILEDQEVREVLKDLSNWPTYPQL 319          
BLAST of mRNA_Ecto-sp9_F_contig9829.17913.1 vs.
Match: Glutaredoxin ((Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM9_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 1.480e-51
Identity = 87/119 (73.11%), Postives = 98/119 (82.35%), Query Frame = 1
Query:    1 LYVKGVLVGGVDEVSKLAEDGDLKNSLASAAGVEPSKNTAGAVGGGKSVEERCKNITKRAETMVFMKGTPDTPRCGFSRTLVGLLREENIAFESFDILEDQEVRQVLKDLSNWPTYPQV 357
            LYVKGVLVGGVD+ +KLAE GDLK  LA AAGV+  K TA A  G KSV++RCK +   AETMVFMKG+PD PRCGFSRTLVGLLR+E I F SFDILEDQ+VRQ LK+LSNWPTYPQ+
Sbjct:   35 LYVKGVLVGGVDDAAKLAEGGDLKAQLAVAAGVDVGKATAAAADGSKSVQDRCKKLLASAETMVFMKGSPDAPRCGFSRTLVGLLRDEAIEFASFDILEDQDVRQALKELSNWPTYPQL 153          
BLAST of mRNA_Ecto-sp9_F_contig9829.17913.1 vs.
Match: Thioredoxin (domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HW89_9ALVE)

HSP 1 Score: 125 bits (313), Expect = 3.150e-32
Identity = 66/119 (55.46%), Postives = 84/119 (70.59%), Query Frame = 1
Query:    1 LYVKGVLVGGVDEVSKLAEDGDLKNSLASAAGVEPSKNTAGAVGGGKSVEERCKNITKRAETMVFMKGTPDTPRCGFSRTLVGLLREENIAFESFDILEDQEVRQVLKDLSNWPTYPQV 357
            LYV G  VGGVD V+++ +DG LK  L  +AG E    TA       S+ +R K++ KRA  M+FMKG P  PRCGFS+T+VG+L+E  I FESFDILED++VRQ LK+ SNWPTYPQ+
Sbjct:  207 LYVNGEFVGGVDIVTEMHQDGSLKE-LMDSAGKETEAATAAVT---PSLHDRLKSLVKRAPVMLFMKGDPVMPRCGFSKTIVGILQECGITFESFDILEDEDVRQGLKEFSNWPTYPQL 321          
BLAST of mRNA_Ecto-sp9_F_contig9829.17913.1 vs.
Match: Glrx3 (protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812VT26_SYMPI)

HSP 1 Score: 120 bits (300), Expect = 1.610e-30
Identity = 64/119 (53.78%), Postives = 78/119 (65.55%), Query Frame = 1
Query:    1 LYVKGVLVGGVDEVSKLAEDGDLKNSLASAAGVEPSKNTAGAVGGGKSVEERCKNITKRAETMVFMKGTPDTPRCGFSRTLVGLLREENIAFESFDILEDQEVRQVLKDLSNWPTYPQV 357
            LY+ G L+GGVD + ++ EDG    SL  A GV   +           ++ER   +  +A  M+FMKGTPD PRCGFSR +VGLL E NI F+SFDIL D+EVRQ LKD SNWPTYPQV
Sbjct:  195 LYINGELLGGVDILKEMDEDG----SLLEAVGVAKEQ----------PLQERLHGLINQAPVMLFMKGTPDEPRCGFSRKVVGLLNENNIKFDSFDILSDEEVRQGLKDYSNWPTYPQV 299          
BLAST of mRNA_Ecto-sp9_F_contig9829.17913.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F7G7_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.200e-30
Identity = 62/120 (51.67%), Postives = 81/120 (67.50%), Query Frame = 1
Query:    1 LYVKGVLVGGVDEVSKL-AEDGDLKNSLASAAGVEPSKNTAGAVGGGKSVEERCKNITKRAETMVFMKGTPDTPRCGFSRTLVGLLREENIAFESFDILEDQEVRQVLKDLSNWPTYPQV 357
            LY +G L+GG+D V  + AED  L   L  A       + + A+     V +RCK++ KR++ ++FMKG PD PRCGFSR  V LLREE +AF+SFDIL D+EVRQ LK+LS WPTYPQ+
Sbjct:  212 LYAQGELIGGIDVVKDMQAEDESLAVQLGLADATTTDSSGSAAMNVIVDVTQRCKHLMKRSKVILFMKGNPDEPRCGFSRKCVALLREEKVAFDSFDILTDEEVRQKLKELSEWPTYPQL 331          
BLAST of mRNA_Ecto-sp9_F_contig9829.17913.1 vs.
Match: glutaredoxin-3-like (n=2 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6C9572)

HSP 1 Score: 120 bits (300), Expect = 2.440e-30
Identity = 58/119 (48.74%), Postives = 83/119 (69.75%), Query Frame = 1
Query:    1 LYVKGVLVGGVDEVSKLAEDGDLKNSLASAAGVEPSKNTAGAVGGGKSVEERCKNITKRAETMVFMKGTPDTPRCGFSRTLVGLLREENIAFESFDILEDQEVRQVLKDLSNWPTYPQV 357
            LY+ G L+GG+D + +LAE+G+L+N L       P K         +S+ +R + + K+A  M+FMKG PD PRCGFS+TL+G++ E  +++E+FDIL+D+EVRQ LK  SNWPTYPQV
Sbjct:  116 LYINGELIGGLDILKELAENGELENLL-------PKK---------QSLNQRLEALIKKAPVMIFMKGNPDVPRCGFSKTLIGIMNEIGVSYETFDILQDEEVRQGLKIYSNWPTYPQV 218          
BLAST of mRNA_Ecto-sp9_F_contig9829.17913.1 vs.
Match: Hypothetical (protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AMW2_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.990e-30
Identity = 62/125 (49.60%), Postives = 82/125 (65.60%), Query Frame = 1
Query:    1 LYVKGVLVGGVDEVSKLAEDGDLKNSLASAAGVEPSKNTAGAV------GGGKSVEERCKNITKRAETMVFMKGTPDTPRCGFSRTLVGLLREENIAFESFDILEDQEVRQVLKDLSNWPTYPQV 357
            LYV G L+GG+D + ++AE+GDL   L    GVE S    GA       GG  S+++R K +  R   M+FMKG P  PRCGFSR +V +L EE  +++SF+ILED+EVRQ LK  S+WPTYPQ+
Sbjct:   15 LYVNGDLMGGLDIMKEMAEEGDLAEQL----GVEKSDAGIGAATSADANGGEGSLDDRLKKLVNRHRVMLFMKGLPSAPRCGFSRQIVEMLDEEGASYDSFNILEDEEVRQGLKAYSDWPTYPQL 135          
BLAST of mRNA_Ecto-sp9_F_contig9829.17913.1 vs.
Match: Hypothetical (protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EM51_POLGL)

HSP 1 Score: 118 bits (295), Expect = 3.820e-30
Identity = 60/119 (50.42%), Postives = 77/119 (64.71%), Query Frame = 1
Query:    1 LYVKGVLVGGVDEVSKLAEDGDLKNSLASAAGVEPSKNTAGAVGGGKSVEERCKNITKRAETMVFMKGTPDTPRCGFSRTLVGLLREENIAFESFDILEDQEVRQVLKDLSNWPTYPQV 357
            LYV G L+GGVD + ++ EDG    ++             G  GG K ++ER K++    + M+FMKG PDTP+CGFS  +VGLL E +I F +FDILED EVRQ LK+ SNWPTYPQV
Sbjct:  148 LYVGGELMGGVDVMKEMDEDGTFMEAM-----------PGGTPGGEKPLQERLKDLISSNDVMLFMKGNPDTPKCGFSGKIVGLLTEHDIKFSTFDILEDDEVRQGLKEYSNWPTYPQV 255          
BLAST of mRNA_Ecto-sp9_F_contig9829.17913.1 vs.
Match: glutaredoxin (3-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B889F48)

HSP 1 Score: 119 bits (297), Expect = 4.790e-30
Identity = 58/119 (48.74%), Postives = 80/119 (67.23%), Query Frame = 1
Query:    1 LYVKGVLVGGVDEVSKLAEDGDLKNSLASAAGVEPSKNTAGAVGGGKSVEERCKNITKRAETMVFMKGTPDTPRCGFSRTLVGLLREENIAFESFDILEDQEVRQVLKDLSNWPTYPQV 357
            +Y  G LVGG+D + +L E G L++ L +              GG  ++EER K++ K+++ MVFMKG P+ PRCGFS+TLVG+L E  + +++FDIL D+EVRQ LK  SNWPTYPQV
Sbjct:  197 VYCSGELVGGLDIIKELVETGQLESELKA--------------GGDNNLEERLKSLVKQSDVMVFMKGCPEAPRCGFSKTLVGILGETGVQYKTFDILTDEEVRQGLKKFSNWPTYPQV 301          
BLAST of mRNA_Ecto-sp9_F_contig9829.17913.1 vs.
Match: Uncharacterized (protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7LHG8_9MAGN)

HSP 1 Score: 120 bits (300), Expect = 6.840e-30
Identity = 61/119 (51.26%), Postives = 81/119 (68.07%), Query Frame = 1
Query:    1 LYVKGVLVGGVDEVSKLAEDGDLKNSLASAAGVEPSKNTAGAVGGGKSVEERCKNITKRAETMVFMKGTPDTPRCGFSRTLVGLLREENIAFESFDILEDQEVRQVLKDLSNWPTYPQV 357
            LY+KG L+GG D V ++ + G+LK +L    G+ P++ T         +E+R KN+   + TM+FMKGTPD PRCGFS  +V  LREE + F SFDIL D+EVRQ LK LSNWPT+PQ+
Sbjct:  282 LYLKGELIGGSDIVLEMQKSGELKKALTEK-GIIPTETT---------LEDRLKNLISSSSTMLFMKGTPDAPRCGFSSKVVNALREEGVGFGSFDILSDEEVRQGLKTLSNWPTFPQL 390          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9829.17913.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Glutaredoxin9.020e-6993.28n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQR0_ECTSI[more]
Glutaredoxin1.480e-5173.11(Fragment) n=1 Tax=Laminaria digitata TaxID=80365 ... [more]
Thioredoxin3.150e-3255.46domain-containing protein n=1 Tax=Chromera velia C... [more]
Glrx31.610e-3053.78protein n=1 Tax=Symbiodinium pilosum TaxID=2952 Re... [more]
Hypothetical2.200e-3051.67protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
glutaredoxin-3-like2.440e-3048.74n=2 Tax=Centruroides sculpturatus TaxID=218467 Rep... [more]
Hypothetical2.990e-3049.60protein n=1 Tax=Minutocellus polymorphus TaxID=265... [more]
Hypothetical3.820e-3050.42protein n=1 Tax=Polarella glacialis TaxID=89957 Re... [more]
glutaredoxin4.790e-3048.743-like n=1 Tax=Gigantopelta aegis TaxID=1735272 Re... [more]
Uncharacterized6.840e-3051.26protein n=1 Tax=Kingdonia uniflora TaxID=39325 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9829contigEcto-sp9_F_contig9829:234..1566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.6
Seed ortholog evalue2.5e-56
Seed eggNOG ortholog2880.D7FQR0
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006810,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009628,GO:0009914,GO:0009926,GO:0009987,GO:0010817,GO:0033554,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0051726,GO:0060918,GO:0065007,GO:0065008,GO:0072593
EggNOG free text desc.protein disulfide oxidoreductase activity
EggNOG OGsCOG0278@1,KOG0911@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-01_000180.1
Exons2
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931076.5080256-CDS-Ecto-sp9_F_contig9829:233..4141622931076.5080256-CDS-Ecto-sp9_F_contig9829:233..414Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9829 234..414 -
1692279021.8245752-CDS-Ecto-sp9_F_contig9829:233..4141692279021.8245752-CDS-Ecto-sp9_F_contig9829:233..414Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9829 234..414 -
1622931076.5214796-CDS-Ecto-sp9_F_contig9829:1390..15661622931076.5214796-CDS-Ecto-sp9_F_contig9829:1390..1566Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9829 1391..1566 -
1692279021.8374307-CDS-Ecto-sp9_F_contig9829:1390..15661692279021.8374307-CDS-Ecto-sp9_F_contig9829:1390..1566Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9829 1391..1566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9829.17913.1prot_Ecto-sp9_F_contig9829.17913.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9829 234..1566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9829.17913.1

>prot_Ecto-sp9_F_contig9829.17913.1 ID=prot_Ecto-sp9_F_contig9829.17913.1|Name=mRNA_Ecto-sp9_F_contig9829.17913.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=119bp
LYVKGVLVGGVDEVSKLAEDGDLKNSLASAAGVEPSKNTAGAVGGGKSVE
ERCKNITKRAETMVFMKGTPDTPRCGFSRTLVGLLREENIAFESFDILED
QEVRQVLKDLSNWPTYPQV
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mRNA from alignment at Ecto-sp9_F_contig9829:234..1566-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9829.17913.1 ID=mRNA_Ecto-sp9_F_contig9829.17913.1|Name=mRNA_Ecto-sp9_F_contig9829.17913.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1333bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9829:234..1566- (Ectocarpus species9 EcSCA_722f female)
CTGTACGTGAAGGGGGTGTTGGTGGGGGGAGTAGACGAGGTGTCCAAACT GGCGGAGGACGGGGACTTGAAAAACAGCCTGGCTAGCGCTGCGGGCGTTG AGCCTAGCAAGAACACCGCGGGGGCTGTTGGGGGCGGCAAGTCTGTGGAG GAGCGGTGCAAGAACATTACGAAGAGGTACGTGCGTAGCGTGTCGTGGGT GAAGTACGTATAGTTAAGGAAGGGGTGTTTTCGTGCGGCAGCTTCCGTCA GAGGCCGAAAGAGAAAGAAGGTCGACTCAAGACTTTCACTGCTCAGAGAG AGTGACAGACACGCGGGAGGCAAGACGACCTCCACGCGGTGTGTCCAACA TACATACACGTATCATACGCGGAACCCCGGAAGGCCCCGTAAATAAGCAC GCTGCCGAGCACCCCCAAACAAGGGTCCCCACTGGGGGGTTAAAAGAGGA ACAATACATAGAATATGTGAGCGATGGGCACCGGCAATTTACGGGGGTAG TGTGGCGAGAAAATGTCGCTCACGAGAAGGCGCGGTGCTGAGAATTTACA TGTAGGGTGAGAAAAACGATATTGGCGAAAAAGCGTGTAGAGAGAACGCG CAGTAGTGTAGTGACGAGGAAGGATGCCGAGAAAACAGTTTGGAGAAGAG TACAACACGAGCACACACGTTGGCGAGAAAAGGACGAGGAAAAAACGCCT CGGTTTGAAACCAGACGGCAAAATCATGACCAATTATATCCGGAAATATT ATGCCCTGTTTCCCACCACTACGTGAACAAACTCGGTGGCACGTGGTATT CCCCGCCAACACGGGTGCGAGGAAGTCGTCAGTTCCAAGCATGTCAACGC ACTTGACTCCCTCTTTGATGATTCAGCTGTCGTATCCCGTGTGTGAGCTT CTACAATACAACGTTACTCTCCCAAAAGCAATGATATACTGCGGCACCAT CCGTATCGCCGTTTCACGTCTGTCGGAGTCCTTCCAACCAGCCCGCCCGC ACTACTGTCAACGTCAAAATGATCGTTGTTCTAGCTGTTCAATTAGGTAA CCCAATAATGCCTAGGGTGTATTTGGTTCTTGTTGTGGGTATCTTTTAAT TCTCAGTTTTGGGATCGCAATATGTCCTGCGCCTTTCTTTTCTGCCGCGC AGAGCGGAGACGATGGTCTTCATGAAAGGCACTCCGGACACCCCTCGTTG TGGCTTCAGCCGAACCCTGGTCGGGCTGCTGAGAGAGGAAAACATCGCCT TCGAGTCGTTCGACATCTTGGAGGACCAGGAGGTTCGGCAGGTCTTGAAA GACCTGTCCAACTGGCCGACGTATCCGCAAGTA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9829:234..1566-

>mRNA_Ecto-sp9_F_contig9829.17913.1 ID=mRNA_Ecto-sp9_F_contig9829.17913.1|Name=mRNA_Ecto-sp9_F_contig9829.17913.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9829:234..1566- (Ectocarpus species9 EcSCA_722f female)
CTGTACGTGAAGGGGGTGTTGGTGGGGGGAGTAGACGAGGTGTCCAAACT
GGCGGAGGACGGGGACTTGAAAAACAGCCTGGCTAGCGCTGCGGGCGTTG
AGCCTAGCAAGAACACCGCGGGGGCTGTTGGGGGCGGCAAGTCTGTGGAG
GAGCGGTGCAAGAACATTACGAAGAGCTGTACGTGAAGGGGGTGTTGGTG
GGGGGAGTAGACGAGGTGTCCAAACTGGCGGAGGACGGGGACTTGAAAAA
CAGCCTGGCTAGCGCTGCGGGCGTTGAGCCTAGCAAGAACACCGCGGGGG
CTGTTGGGGGCGGCAAGTCTGTGGAGGAGCGGTGCAAGAACATTACGAAG
AGAGCGGAGACGATGGTCTTCATGAAAGGCACTCCGGACACCCCTCGTTG
TGGCTTCAGCCGAACCCTGGTCGGGCTGCTGAGAGAGGAAAACATCGCCT
TCGAGTCGTTCGACATCTTGGAGGACCAGGAGGTTCGGCAGGTCTTGAAA
GACCTGTCCAACTGGCCGACGTATCCGCAAGTAAGCGGAGACGATGGTCT
TCATGAAAGGCACTCCGGACACCCCTCGTTGTGGCTTCAGCCGAACCCTG
GTCGGGCTGCTGAGAGAGGAAAACATCGCCTTCGAGTCGTTCGACATCTT
GGAGGACCAGGAGGTTCGGCAGGTCTTGAAAGACCTGTCCAACTGGCCGA
CGTATCCGCAAGTA
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