mRNA_Ecto-sp9_F_contig9818.17905.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9818.17905.1
Unique NamemRNA_Ecto-sp9_F_contig9818.17905.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9818.17905.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9818contigEcto-sp9_F_contig9818:1998..4552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_001600.1
Exons4
Model size1361
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9818.17905.1prot_Ecto-sp9_F_contig9818.17905.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9818 2724..3834 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931075.3809307-UTR-Ecto-sp9_F_contig9818:1997..27231622931075.3809307-UTR-Ecto-sp9_F_contig9818:1997..2723Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9818 1998..2723 -
1692279021.327601-UTR-Ecto-sp9_F_contig9818:1997..27231692279021.327601-UTR-Ecto-sp9_F_contig9818:1997..2723Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9818 1998..2723 -
1622931075.4526649-UTR-Ecto-sp9_F_contig9818:3834..38431622931075.4526649-UTR-Ecto-sp9_F_contig9818:3834..3843Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9818 3835..3843 -
1692279021.3734546-UTR-Ecto-sp9_F_contig9818:3834..38431692279021.3734546-UTR-Ecto-sp9_F_contig9818:3834..3843Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9818 3835..3843 -
1622931075.4707527-UTR-Ecto-sp9_F_contig9818:4295..45521622931075.4707527-UTR-Ecto-sp9_F_contig9818:4295..4552Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9818 4296..4552 -
1692279021.3850532-UTR-Ecto-sp9_F_contig9818:4295..45521692279021.3850532-UTR-Ecto-sp9_F_contig9818:4295..4552Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9818 4296..4552 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931075.3981347-CDS-Ecto-sp9_F_contig9818:2723..29031622931075.3981347-CDS-Ecto-sp9_F_contig9818:2723..2903Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9818 2724..2903 -
1692279021.3378577-CDS-Ecto-sp9_F_contig9818:2723..29031692279021.3378577-CDS-Ecto-sp9_F_contig9818:2723..2903Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9818 2724..2903 -
1622931075.4153006-CDS-Ecto-sp9_F_contig9818:3268..33881622931075.4153006-CDS-Ecto-sp9_F_contig9818:3268..3388Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9818 3269..3388 -
1692279021.3532448-CDS-Ecto-sp9_F_contig9818:3268..33881692279021.3532448-CDS-Ecto-sp9_F_contig9818:3268..3388Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9818 3269..3388 -
1622931075.4325404-CDS-Ecto-sp9_F_contig9818:3765..38341622931075.4325404-CDS-Ecto-sp9_F_contig9818:3765..3834Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9818 3766..3834 -
1692279021.363977-CDS-Ecto-sp9_F_contig9818:3765..38341692279021.363977-CDS-Ecto-sp9_F_contig9818:3765..3834Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9818 3766..3834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9818.17905.1

>prot_Ecto-sp9_F_contig9818.17905.1 ID=prot_Ecto-sp9_F_contig9818.17905.1|Name=mRNA_Ecto-sp9_F_contig9818.17905.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=123bp
MSGHVPRVRMHMRKNWCGTCVGETKRSRTRWREHNEKQAMWCVTSGEKGT
VVQEDGEAGRHHQVSVMRHAILKKQAERRASARSFGYLVQPAAAPVLECK
NCLAPLTVTLIPPAQVLLHSTF*
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mRNA from alignment at Ecto-sp9_F_contig9818:1998..4552-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9818.17905.1 ID=mRNA_Ecto-sp9_F_contig9818.17905.1|Name=mRNA_Ecto-sp9_F_contig9818.17905.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2555bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9818:1998..4552- (Ectocarpus species9 EcSCA_722f female)
CCCCGTTTCACGGTGACTGTACAGCTCCCAAAGTCTACCGTTCCACAAAA
AACGCCCGCTTACTCTGTTGGAAACCAGTAGCGTGCAGCTGGTTGCATCC
TCGCCCGTGCCACGATCTGCAGTCTAGGTCGTCAGTAGAGCTCCCCCGTC
GTGCCGATTGCCACGAAGTTTGACGCGCCGATTTGCACGTTTCTACATCC
GGTCTCTGCCCGGAGAGTTTTCATTGCCGCCAAGATCGTGGCCGTTCTAA
GCCAAAGGTACCTTTATTAGCCGTTGTGGTGAATTGAAGCTGCGCATGCT
TGAGCGTACGTGGCGCCTCGTTGTCATTCTCCATGTGCTATATGTAACAC
CGGGGCACCGCTGACTTTGCGTGTGCCCCTCTTTGTTTTCCTGGACTGTT
GACGATTCAATGTTCCGATTGCCTCTATTACCCGTACCAACCAGCTCGGT
GATCTCTGTTTCCGCCCGCTTTTGTTTCTCTCTCCATCTCTTGCTCTCAC
TTCTAGCAACAGTGTACACATGGTCAGAGTGGTTGATGATGCAAGACAAT
ATGACAACAGGTTCAAACACGCCGTCCAAGATAGTTACGTCTCCGTGCAC
CTGCACTTACGCCAACTTTTTGCGCTCGTACAGCAACCCACCTGTTGGTT
TGTTGTATGACCCTCGCCCTATCCGCCACGTCTATGTGTGTCGTCGTATA
CCAAAGCAGGTCCGTACTATGTCGGGGCACGTCCCCCGAGTCCGCATGCA
CATGCGGAAAAACTGGTGCGGAACCTGCGTGGGAGAGGTGAGTTGTATTT
TTTTTTCTCGATTTTTACCAATCCTGCTTCGGGCGATGACGCAACGCTGT
CAGGGAATTCAGAATTTTCCTCTCGGGTGTGGCTTATTGTAGTAGGAATG
CTAGTTTCTGGATCTCTACTCCATCACTTTAAGTGTGCCCATGTTCTCCA
CCGGTACTGACCCACATAGTATTCTTCCAGGTTAACGAGAGAGACGGAGA
ACAAATCGTATGTACCGAGGTACGCGAGACGTGATGAAGCACACCCCATT
CCGTAGTGACCGAGATATTTTGACATCATTCGAGAGACTTTGACATCCCG
TGGCAAGCGGTTATTCAATCTACCCCCATCCTCAATCACGGGCCTAACCA
CCAATTGTCGTCAGACCAAACGAAGCCGAACTCGGTGGAGAGAACATAAC
GAGAAACAAGCAATGTGGTGTGTAACAAGCGGTGAAAAGGGGACTGTTGT
ACAGGAGGACGGCGAGGCAGGTCGACACCATCAGGTTCGGTAGAGGCATT
CCGCCGGAGACGTATCCACTGCTAATGCGTATAGAATCTTGTAGGTCTGC
AGCCGACTTGAAACCAATGATGAAAACGCCAATGGGCACGGTTTGAAGCG
GTCAGCTCACGGCCCTGCCACTGTCTCTGCTCTTTTCCATTTCTTGCCGA
TCAGGTTGTCAGTTGGTCTATTGGAGGGGGTGCGGGTGCTGCCGCCAGCC
CTGTTGGTCCGTTCTACAAGAATCTGCTACAGTAGTAAACAAAACTATCT
AGATGCAGGGGTGTCGTCTTGAATGCACTGGTGACGCAGTGTACACATTC
CAATGACCCGTGCAGAAACGGAGAATTCGACAACGTTTTCGTGGGACAGG
TGTCAGTTATGCGTCACGCAATCTTGAAGAAACAAGCGGAGCGGAGGGCT
AGTGCAAGGTCGTTTGGATATCTTGTCCAGCCTGCTGCAGCACCTGTGCT
TGAATGCAAGAACTGCTTGGCGCCGTTAACGGTGACGCTTATTCCGCCTG
CCCAAGTCTTACTTCACTCGACATTTTGATCGTATTCTTCCTCGCGGGGA
AAGATAGAGAGAGCTGCTGGAGCGAAAACTGGGGAATCGAACTACTTCTC
GCACCGTGCTCTGGAAGCCAGGAAAAGCCGGATGCTGTTACGAAGCAGGC
TCAGGCGGTCCGATATTGTCCCGTCGGGGGGCAGTGGAAATGCCCCATGT
TGCTATTCCAGTGGCTCATGACTTGTTGACACCGACCTTTTTGCTGAACG
CAAGTTGAGTCTCATACCGAAGGCGGCATTGAAATTCCTCTCTGGCTGTT
GAGACCCCGGGTTGCGTGTTTAGTCATTGGCGTTTCGAGACATCCACAGC
AGAAGCCATCCGGTCCGGTGTTGGGCCGAATAGATATTAGTCGCACGACG
ACTGCAAGTGATTCGTGGGTGCTGCCTAGGCCCGATACTGCGGACACAGC
TATTTCTTTCTATGTTGCATGTTGCTTGCCTAGTGAACAGACGTTTGCAG
GCGCTACGGGTACGGTCACCAGGAAAGTTCCACAAAGTCTACGTCGAGAC
AGGTCACAGTACAATGCTGTCGGGAGGGAGCAGAGCTGGGAAAGAAAGTC
ATTCGCTGAGGGGGGCGCCATCTGTTTTTCGGCAATCCGCCGGAAATCGC
ACCCAGACGGGGATGAAGAGCTGTGCAAGAGCACCAGAGTATGCCATTCT
GTCCGGGAAAATAGGAAAGGACAATATTAATATTGTGATTCTACGAGAGA
ACCCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9818:1998..4552-

>mRNA_Ecto-sp9_F_contig9818.17905.1 ID=mRNA_Ecto-sp9_F_contig9818.17905.1|Name=mRNA_Ecto-sp9_F_contig9818.17905.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=738bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9818:1998..4552- (Ectocarpus species9 EcSCA_722f female)
ATGTCGGGGCACGTCCCCCGAGTCCGCATGCACATGCGGAAAAACTGGTG
CGGAACCTGCGTGGGAGAGATGTCGGGGCACGTCCCCCGAGTCCGCATGC
ACATGCGGAAAAACTGGTGCGGAACCTGCGTGGGAGAGACCAAACGAAGC
CGAACTCGGTGGAGAGAACATAACGAGAAACAAGCAATGTGGTGTGTAAC
AAGCGGTGAAAAGGGGACTGTTGTACAGGAGGACGGCGAGGCAGGTCGAC
ACCATCAGACCAAACGAAGCCGAACTCGGTGGAGAGAACATAACGAGAAA
CAAGCAATGTGGTGTGTAACAAGCGGTGAAAAGGGGACTGTTGTACAGGA
GGACGGCGAGGCAGGTCGACACCATCAGGTGTCAGTTATGCGTCACGCAA
TCTTGAAGAAACAAGCGGAGCGGAGGGCTAGTGCAAGGTCGTTTGGATAT
CTTGTCCAGCCTGCTGCAGCACCTGTGCTTGAATGCAAGAACTGCTTGGC
GCCGTTAACGGTGACGCTTATTCCGCCTGCCCAAGTCTTACTTCACTCGA
CATTTTGAGTGTCAGTTATGCGTCACGCAATCTTGAAGAAACAAGCGGAG
CGGAGGGCTAGTGCAAGGTCGTTTGGATATCTTGTCCAGCCTGCTGCAGC
ACCTGTGCTTGAATGCAAGAACTGCTTGGCGCCGTTAACGGTGACGCTTA
TTCCGCCTGCCCAAGTCTTACTTCACTCGACATTTTGA
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