mRNA_Ecto-sp9_F_contig9816.17904.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9816.17904.1
Unique NamemRNA_Ecto-sp9_F_contig9816.17904.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9816.17904.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP45_ECTSI)

HSP 1 Score: 384 bits (986), Expect = 1.180e-130
Identity = 223/348 (64.08%), Postives = 242/348 (69.54%), Query Frame = 1 
Query:    1 MDHFWYLLSHGMLNVHSQDVHQRTVLFNLESFDACAGDFLTVLQLYEAIGGDLDHKDRDGNSWLVRYASDNLGMALVWAGASAFNPHKGVWKRGLSIAATRGFRGTMRAIVARDAPDQEFVDRSLNAAALQLSNDGHEQDMSGIRILVDVYGASVNRCGTLANCVHRNPFVVSALISLGA------W-W------VAEHRTPSSGGDSLFHRIS-GLGPKSVARGMECAGRIRLHSHDDSPERED*---------ERGLPSATF----RLVGGD--------RGVVSP--VRQWW*TGVWYFLGSEAAVPRIDRSGVDADDGDDGDRLVLEVAFLAEFGVFQIIVRFV 933
            M+HFWYLLSHGMLNVHSQDVHQRTVLFNLESFDACAGDFLTVLQLYEAIGGDLDHKDRDGNS L+R ASDNLGMALVWAGASA+  HKGVWKRGLSIAA RGFRGTMRAIVARDAPDQEFVDRSLNAAAL+LSNDGHEQDMSGIRILVDVYGASVNRCGTLANCVHRNPFVVSALISLGA      W W       A HR   +    +F  ++  L P+  +   E      +    +  E  D          ERG     F    R V G         RG+++     + W     + L        + + GVDADDGDDGDRLVLEVAFL EFGVFQ IV FV
Sbjct:    1 MEHFWYLLSHGMLNVHSQDVHQRTVLFNLESFDACAGDFLTVLQLYEAIGGDLDHKDRDGNSLLMRNASDNLGMALVWAGASAYYSHKGVWKRGLSIAAARGFRGTMRAIVARDAPDQEFVDRSLNAAALRLSNDGHEQDMSGIRILVDVYGASVNRCGTLANCVHRNPFVVSALISLGADRTRFVWDWERGLRNTALHRVAETHSSIVFQALAQNLSPEEWSVQDEFGFTPMMTLLSERTESVDYLRLRFDWLVERGASCLPFDNGGRRVSGTFWGQRQPFRGLIAARVCEENWAKRRGFIL--------LRKRGVDADDGDDGDRLVLEVAFLVEFGVFQNIVGFV 340
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9816.17904.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.180e-13064.08protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9816contigEcto-sp9_F_contig9816:3012..3944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-06_006670.1
Exons1
Model size933
Cds size696
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931075.2802773-CDS-Ecto-sp9_F_contig9816:3011..37071622931075.2802773-CDS-Ecto-sp9_F_contig9816:3011..3707Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9816 3012..3707 +
1692279021.3066618-CDS-Ecto-sp9_F_contig9816:3011..37071692279021.3066618-CDS-Ecto-sp9_F_contig9816:3011..3707Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9816 3012..3707 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931075.3194149-UTR-Ecto-sp9_F_contig9816:3707..39441622931075.3194149-UTR-Ecto-sp9_F_contig9816:3707..3944Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9816 3708..3944 +
1692279021.3169622-UTR-Ecto-sp9_F_contig9816:3707..39441692279021.3169622-UTR-Ecto-sp9_F_contig9816:3707..3944Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9816 3708..3944 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9816.17904.1prot_Ecto-sp9_F_contig9816.17904.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9816 3012..3707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9816.17904.1

>prot_Ecto-sp9_F_contig9816.17904.1 ID=prot_Ecto-sp9_F_contig9816.17904.1|Name=mRNA_Ecto-sp9_F_contig9816.17904.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=232bp
MDHFWYLLSHGMLNVHSQDVHQRTVLFNLESFDACAGDFLTVLQLYEAIG
GDLDHKDRDGNSWLVRYASDNLGMALVWAGASAFNPHKGVWKRGLSIAAT
RGFRGTMRAIVARDAPDQEFVDRSLNAAALQLSNDGHEQDMSGIRILVDV
YGASVNRCGTLANCVHRNPFVVSALISLGAWWVAEHRTPSSGGDSLFHRI
SGLGPKSVARGMECAGRIRLHSHDDSPERED*
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mRNA from alignment at Ecto-sp9_F_contig9816:3012..3944+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9816.17904.1 ID=mRNA_Ecto-sp9_F_contig9816.17904.1|Name=mRNA_Ecto-sp9_F_contig9816.17904.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=933bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9816:3012..3944+ (Ectocarpus species9 EcSCA_722f female)
ATGGATCACTTCTGGTACCTTCTGTCGCACGGCATGCTAAATGTGCATTC
GCAGGATGTGCACCAGCGAACCGTTCTCTTCAACCTGGAGTCCTTCGACG
CCTGTGCGGGTGACTTTTTGACGGTGTTGCAACTGTATGAAGCTATCGGT
GGCGACTTGGATCACAAGGATCGCGATGGGAATTCTTGGTTGGTGCGATA
TGCGAGTGATAATCTCGGGATGGCGTTGGTTTGGGCGGGTGCTTCCGCGT
TTAATCCCCACAAGGGCGTGTGGAAGAGGGGATTATCAATCGCTGCTACA
AGGGGCTTCCGTGGTACGATGCGGGCGATTGTCGCGCGGGATGCTCCGGA
TCAAGAGTTTGTAGACAGGAGTCTCAACGCGGCAGCTCTGCAGCTGTCGA
ACGACGGGCATGAACAGGACATGTCGGGCATACGGATACTGGTTGATGTG
TACGGGGCGAGCGTGAACCGATGTGGCACTCTGGCGAACTGCGTGCATCG
CAACCCTTTCGTGGTATCTGCTTTGATCAGTCTTGGTGCTTGGTGGGTTG
CGGAACACCGCACTCCATCGAGTGGCGGAGACTCACTCTTCCATCGTATT
TCAGGCCTTGGCCCAAAATCTGTCGCCAGAGGAATGGAGTGTGCGGGACG
AATTCGGCTTCACTCCCATGATGACTCTCCTGAGCGAGAGGACTGAGAGC
GAGGACTACCTTCGGCTACGTTTCGACTGGTTGGTGGAGATCGGGGCGTC
GTGTCTCCCGTTCGACAATGGTGGTAGACGGGTGTCTGGTACTTTTTGGG
GTCAGAGGCAGCCGTTCCGCGGATTGATCGCAGCGGTGTTGATGCCGACG
ACGGTGATGACGGTGATCGCCTGGTGTTGGAAGTTGCCTTTCTGGCGGAA
TTCGGGGTGTTTCAGATTATTGTGAGATTTGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9816:3012..3944+

>mRNA_Ecto-sp9_F_contig9816.17904.1 ID=mRNA_Ecto-sp9_F_contig9816.17904.1|Name=mRNA_Ecto-sp9_F_contig9816.17904.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1392bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9816:3012..3944+ (Ectocarpus species9 EcSCA_722f female)
ATGGATCACTTCTGGTACCTTCTGTCGCACGGCATGCTAAATGTGCATTC
GCAGGATGTGCACCAGCGAACCGTTCTCTTCAACCTGGAGTCCTTCGACG
CCTGTGCGGGTGACTTTTTGACGGTGTTGCAACTGTATGAAGCTATCGGT
GGCGACTTGGATCACAAGGATCGCGATGGGAATTCTTGGTTGGTGCGATA
TGCGAGTGATAATCTCGGGATGGCGTTGGTTTGGGCGGGTGCTTCCGCGT
TTAATCCCCACAAGGGCGTGTGGAAGAGGGGATTATCAATCGCTGCTACA
AGGGGCTTCCGTGGTACGATGCGGGCGATTGTCGCGCGGGATGCTCCGGA
TCAAGAGTTTGTAGACAGGAGTCTCAACGCGGCAGCTCTGCAGCTGTCGA
ACGACGGGCATGAACAGGACATGTCGGGCATACGGATACTGGTTGATGTG
TACGGGGCGAGCGTGAACCGATGTGGCACTCTGGCGAACTGCGTGCATCG
CAACCCTTTCGTGGTATCTGCTTTGATCAGTCTTGGTGCTTGGTGGGTTG
CGGAACACCGCACTCCATCGAGTGGCGGAGACTCACTCTTCCATCGTATT
TCAGGCCTTGGCCCAAAATCTGTCGCCAGAGGAATGGAGTGTGCGGGACG
AATTCGGCTTCACTCCCATGATGACTCTCCTGAGCGAGAGGACTGAATGG
ATCACTTCTGGTACCTTCTGTCGCACGGCATGCTAAATGTGCATTCGCAG
GATGTGCACCAGCGAACCGTTCTCTTCAACCTGGAGTCCTTCGACGCCTG
TGCGGGTGACTTTTTGACGGTGTTGCAACTGTATGAAGCTATCGGTGGCG
ACTTGGATCACAAGGATCGCGATGGGAATTCTTGGTTGGTGCGATATGCG
AGTGATAATCTCGGGATGGCGTTGGTTTGGGCGGGTGCTTCCGCGTTTAA
TCCCCACAAGGGCGTGTGGAAGAGGGGATTATCAATCGCTGCTACAAGGG
GCTTCCGTGGTACGATGCGGGCGATTGTCGCGCGGGATGCTCCGGATCAA
GAGTTTGTAGACAGGAGTCTCAACGCGGCAGCTCTGCAGCTGTCGAACGA
CGGGCATGAACAGGACATGTCGGGCATACGGATACTGGTTGATGTGTACG
GGGCGAGCGTGAACCGATGTGGCACTCTGGCGAACTGCGTGCATCGCAAC
CCTTTCGTGGTATCTGCTTTGATCAGTCTTGGTGCTTGGTGGGTTGCGGA
ACACCGCACTCCATCGAGTGGCGGAGACTCACTCTTCCATCGTATTTCAG
GCCTTGGCCCAAAATCTGTCGCCAGAGGAATGGAGTGTGCGGGACGAATT
CGGCTTCACTCCCATGATGACTCTCCTGAGCGAGAGGACTGA
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