mRNA_Ecto-sp9_F_contig9816.17902.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9816.17902.1
Unique NamemRNA_Ecto-sp9_F_contig9816.17902.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9816.17902.1 vs.
Match: EsV-1-160 (n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC2_ESV1K)

HSP 1 Score: 155 bits (392), Expect = 2.470e-40
Identity = 83/189 (43.92%), Postives = 123/189 (65.08%), Query Frame = 1 
Query:    1 NYWGSDYVQTSDIDLVDDHASILPIGDSS-TAFTGEYDGGLFEIKNWSYSSSTELYQGLFGRARSATLQRIRLSGVWTLSGSPSGSASATAFMCGNVDYGSVDDVEGDFAEGSAMTSTADNRGALFGSINGCSLDRVTLRGSVNFDSSSTGDCGGMMGMITYNATATNWRNLATFSNGLSGENVGGICG 564
            +YW + Y+QT+DIDL+DDH  I PIG S+   F+G+YDGG ++I NW  + +++   GLFG     +L+ +RL GVWT     SG++S   F+CG +D   V DVEGDFAEG+A+T++A + G LFG +N   +   T+RGSV  + S+ G  GG++G        T  RN+ATF+ G++G++ GG+ G
Sbjct:  538 DYWSASYLQTADIDLIDDHEHITPIGVSTENPFSGDYDGGSYKISNWCSTEASDR-TGLFGEVVGGSLKHLRLGGVWT----SSGASSYRGFVCGKLDSAVVRDVEGDFAEGTAITNSATHTGTLFGYVNDSEVYGATVRGSVEIEESTNGRTGGVVGHAV-GTDVTMCRNVATFTKGITGDSAGGVIG 720
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BLAST of mRNA_Ecto-sp9_F_contig9816.17902.1 vs.
Match: IPT/TIG (domain-containing protein n=2 Tax=Candidatus Aquiluna sp. UB-MaderosW2red TaxID=1855377 RepID=A0A1G4VF91_9MICO)

HSP 1 Score: 60.8 bits (146), Expect = 1.890e-7
Identity = 62/198 (31.31%), Postives = 94/198 (47.47%), Query Frame = 1 
Query:   19 YVQTSDIDLVDDHASILPIGDSSTAFTGEYDGGLFEIKNWSYSSSTELYQ--GLFGRARSAT-----LQRIRLSGVW--TLSGSPSGSASATAFMCGNVDYGSVDDVEGDFAEGSAMTSTADNRGALFGSINGCSLDRVTLRGSVNFD---SSSTGDCGGMMGMITYNATATNWRNLATFSNGLSGEN-VGGICGNFD 573
            + QT+D+DL    ++  PIG+ +TAF   YDGGL+ IKN +  + T      GLFG A S T     ++RI LSGV        P+      A + GN+       +    A GS + +     G+  G + G S     +   + FD   SSS    GG++G + Y  + T   ++++    +SG   VGG  G+FD
Sbjct:   64 FQQTADVDL-GSISNWTPIGNHTTAFNDNYDGGLYLIKNLTIDARTTASSEFGLFGLADSGTDVYPEIRRIILSGVSLRVAVADPTHQVFVGA-LAGNLINDQFSSLTTFSASGSVLVTGEAAAGSATGGLIGKSAGAAAIPTGLRFDGTVSSSAEITGGLVGHLIYGGSRTANIDISSVVGSVSGAKYVGGFLGSFD 259
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BLAST of mRNA_Ecto-sp9_F_contig9816.17902.1 vs.
Match: GLUG (domain protein n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) TaxID=517418 RepID=B3QTF6_CHLT3)

HSP 1 Score: 56.2 bits (134), Expect = 6.580e-6
Identity = 41/133 (30.83%), Postives = 63/133 (47.37%), Query Frame = 1 
Query:    7 WGSDYVQTSDIDLVDDHASI---------LPIGDSSTAFTGEYDGGLFEIKNWSYSSSTELYQGLFGRARSATLQRIRLSGVWTLSGSPSGSASATAFMCGNVDYGSVDDVEGDFAEGSAMTSTADNRGALFG 378
            WG  Y QT+DI   D   +I          PIG+S+T FTG YDGG + I +   + ST  Y  LFG    A+++ + ++ V           + + ++ G V   S+  +   +A G  +T  +DN G L G
Sbjct:   54 WGKYYKQTADIHFADASPAIDTWDGGAGWTPIGNSTTKFTGTYDGGNYRIDSLYINRSTAKYVSLFGNIGLASVENLGVTNV---------RITGSIYVSGLVGRDSLSQITNCYATGQ-VTGNSDNVGILVG 176
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BLAST of mRNA_Ecto-sp9_F_contig9816.17902.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382P0K7_9ZZZZ)

HSP 1 Score: 51.6 bits (122), Expect = 2.760e-5
Identity = 30/64 (46.88%), Postives = 36/64 (56.25%), Query Frame = 1 
Query:    7 WGSDYVQTSDIDLV-----DDHASILPIGDSSTAFTGEYDGGLFEIKNWSYSSSTELYQGLFGR 183
            W + Y+QTSDID       D +A   PIG+SST FTG YDG    I +   + ST    GLFGR
Sbjct:   51 WSAHYIQTSDIDASSSSNWDSNAGFTPIGNSSTRFTGSYDGDGHIIDSLFINRSTNSRIGLFGR 114
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9816.17902.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
EsV-1-1602.470e-4043.92n=1 Tax=Ectocarpus siliculosus virus 1 (isolate Ne... [more]
IPT/TIG1.890e-731.31domain-containing protein n=2 Tax=Candidatus Aquil... [more]
GLUG6.580e-630.83domain protein n=1 Tax=Chloroherpeton thalassium (... [more]
Uncharacterized2.760e-546.88protein (Fragment) n=1 Tax=marine metagenome TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9816contigEcto-sp9_F_contig9816:730..1302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size573
Cds size573
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931075.0564883-CDS-Ecto-sp9_F_contig9816:729..13021622931075.0564883-CDS-Ecto-sp9_F_contig9816:729..1302Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9816 730..1302 -
1692279021.2742884-CDS-Ecto-sp9_F_contig9816:729..13021692279021.2742884-CDS-Ecto-sp9_F_contig9816:729..1302Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9816 730..1302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9816.17902.1prot_Ecto-sp9_F_contig9816.17902.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9816 730..1302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9816.17902.1

>prot_Ecto-sp9_F_contig9816.17902.1 ID=prot_Ecto-sp9_F_contig9816.17902.1|Name=mRNA_Ecto-sp9_F_contig9816.17902.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=191bp
NYWGSDYVQTSDIDLVDDHASILPIGDSSTAFTGEYDGGLFEIKNWSYSS
STELYQGLFGRARSATLQRIRLSGVWTLSGSPSGSASATAFMCGNVDYGS
VDDVEGDFAEGSAMTSTADNRGALFGSINGCSLDRVTLRGSVNFDSSSTG
DCGGMMGMITYNATATNWRNLATFSNGLSGENVGGICGNFD
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mRNA from alignment at Ecto-sp9_F_contig9816:730..1302-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9816.17902.1 ID=mRNA_Ecto-sp9_F_contig9816.17902.1|Name=mRNA_Ecto-sp9_F_contig9816.17902.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=573bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9816:730..1302- (Ectocarpus species9 EcSCA_722f female)
AATTACTGGGGGTCTGACTATGTGCAGACGAGCGACATCGACTTGGTGGA
CGATCACGCGAGCATCCTTCCGATCGGGGACTCTTCGACCGCTTTTACAG
GGGAGTACGATGGAGGTCTTTTCGAAATCAAGAACTGGTCGTATTCCAGC
AGCACTGAGTTGTACCAGGGCTTGTTCGGGAGAGCGAGGTCTGCTACTCT
GCAACGCATCCGCCTGTCGGGTGTTTGGACACTGAGTGGTTCACCGAGTG
GTTCCGCGTCAGCAACCGCTTTCATGTGCGGGAACGTCGATTATGGAAGC
GTTGATGATGTAGAGGGAGACTTTGCCGAAGGGTCGGCCATGACTTCAAC
CGCAGATAATCGCGGCGCTTTGTTCGGCTCGATCAACGGTTGCTCTCTCG
ACCGTGTGACGTTGCGTGGATCTGTGAACTTTGATTCCAGTTCCACTGGA
GACTGTGGGGGTATGATGGGGATGATCACGTACAACGCCACGGCCACTAA
TTGGCGCAATCTCGCAACATTTTCCAACGGCCTCAGTGGCGAAAATGTTG
GTGGAATCTGCGGAAATTTTGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9816:730..1302-

>mRNA_Ecto-sp9_F_contig9816.17902.1 ID=mRNA_Ecto-sp9_F_contig9816.17902.1|Name=mRNA_Ecto-sp9_F_contig9816.17902.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1146bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9816:730..1302- (Ectocarpus species9 EcSCA_722f female)
AATTACTGGGGGTCTGACTATGTGCAGACGAGCGACATCGACTTGGTGGA
CGATCACGCGAGCATCCTTCCGATCGGGGACTCTTCGACCGCTTTTACAG
GGGAGTACGATGGAGGTCTTTTCGAAATCAAGAACTGGTCGTATTCCAGC
AGCACTGAGTTGTACCAGGGCTTGTTCGGGAGAGCGAGGTCTGCTACTCT
GCAACGCATCCGCCTGTCGGGTGTTTGGACACTGAGTGGTTCACCGAGTG
GTTCCGCGTCAGCAACCGCTTTCATGTGCGGGAACGTCGATTATGGAAGC
GTTGATGATGTAGAGGGAGACTTTGCCGAAGGGTCGGCCATGACTTCAAC
CGCAGATAATCGCGGCGCTTTGTTCGGCTCGATCAACGGTTGCTCTCTCG
ACCGTGTGACGTTGCGTGGATCTGTGAACTTTGATTCCAGTTCCACTGGA
GACTGTGGGGGTATGATGGGGATGATCACGTACAACGCCACGGCCACTAA
TTGGCGCAATCTCGCAACATTTTCCAACGGCCTCAGTGGCGAAAATGTTG
GTGGAATCTGCGGAAATTTTGACAATTACTGGGGGTCTGACTATGTGCAG
ACGAGCGACATCGACTTGGTGGACGATCACGCGAGCATCCTTCCGATCGG
GGACTCTTCGACCGCTTTTACAGGGGAGTACGATGGAGGTCTTTTCGAAA
TCAAGAACTGGTCGTATTCCAGCAGCACTGAGTTGTACCAGGGCTTGTTC
GGGAGAGCGAGGTCTGCTACTCTGCAACGCATCCGCCTGTCGGGTGTTTG
GACACTGAGTGGTTCACCGAGTGGTTCCGCGTCAGCAACCGCTTTCATGT
GCGGGAACGTCGATTATGGAAGCGTTGATGATGTAGAGGGAGACTTTGCC
GAAGGGTCGGCCATGACTTCAACCGCAGATAATCGCGGCGCTTTGTTCGG
CTCGATCAACGGTTGCTCTCTCGACCGTGTGACGTTGCGTGGATCTGTGA
ACTTTGATTCCAGTTCCACTGGAGACTGTGGGGGTATGATGGGGATGATC
ACGTACAACGCCACGGCCACTAATTGGCGCAATCTCGCAACATTTTCCAA
CGGCCTCAGTGGCGAAAATGTTGGTGGAATCTGCGGAAATTTTGAC
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