mRNA_Ecto-sp9_F_contig9806.17896.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Match: tRNA:m(4)X (modification enzyme TRM13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ5_ECTSI) HSP 1 Score: 691 bits (1784), Expect = 2.650e-245 Identity = 367/431 (85.15%), Postives = 372/431 (86.31%), Query Frame = 1
Query: 109 RALVGPAGGDSGHVENGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGVSTRARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRRDGWTTDGETSRENSMLTLPPRPESRHADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWISLEPDAGARKNNRYPDDRHPGVTSSPSFARKNPGETASVPAGSRRPAAETRKLEPVLEPGGGDYPRPGEREADGWSEDGXXXXXXXXXXXXXXXXGEDSLERAGETNRGHSSSPPWYTTPAPSFMTASTPSSLQLPTSDNANANTSIGDGSEVL-------------APLTPSEKAAAARGCKRLLDRGRRAFIEERLGLRSEIVHFVGSDVTPENALLLGFRAEEGP 1362
R LVGPAGGD+GH ENGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGVSTRARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALR +MLTLPPRPESR ADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWISLEPDAGARKNNRYPDDRHPGVTSSPSF RK PGETASV A SRRPAAETRKLEPVLEPGGGD PRPGEREA GWS G EDSLERA ETNRGHSSSPPW+TTPAP+FMTASTPSSL PTSDNANANTSIGDGS+VL APLTPSEKA AARGCKRLLDRGRRAFIEERLGLRSEIVHFVGSDVTPENALLLGFRAEEGP
Sbjct: 198 RGLVGPAGGDNGHGENGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGVSTRARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALR--------------AMLTLPPRPESRDADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWISLEPDAGARKNNRYPDDRHPGVTSSPSFCRKTPGETASVAARSRRPAAETRKLEPVLEPGGGDCPRPGEREAYGWSGGGPGEAREGTWTEQLCGEREDSLERARETNRGHSSSPPWHTTPAPTFMTASTPSSLHSPTSDNANANTSIGDGSDVLXXXXXXXXXXXXLAPLTPSEKAVAARGCKRLLDRGRRAFIEERLGLRSEIVHFVGSDVTPENALLLGFRAEEGP 614
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Match: tRNA:m(4)X (modification enzyme TRM13 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUX2_9PHAE) HSP 1 Score: 659 bits (1700), Expect = 1.300e-231 Identity = 361/458 (78.82%), Postives = 372/458 (81.22%), Query Frame = 1
Query: 109 RALVGP--AGGDSGHVENGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGVSTRARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRRDGWTTDGETSREN-------------------------------------SMLTLPPRPESRHADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWISLEPDAGARKNNRYPDDRHPGVTSSPSFARKNPGETASVPAGSRRPAAETRKLEPVLEPGGGDYPRPGEREADGWSEDGXXXXXXXXXXXXXXXXGEDSLERAGETNRGHSSSPPWYTTPAPSF-MTASTPSSLQLPTSDNANANTSIGDGSEVLAPLTPSEKAAAARGCKRLLDRGRRAFIEERLGLRSEIVHFVGSDVTPENALLLGFRAEEGP 1362
R LVGP AGG+SGH E+GPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGVSTRARIDIRDL+MGGLPSLTA GDDRPVVAVAKHLCGVATDLALRRDG TDGET+RE +MLTLPPR ESR ADDGGHV NGDPT APAAATTRVGGVAIATCCHHVCNWRDYVGRDFL QQGFSARDFEAMRRISAWISLEPDAGARKNNRYPDDRHPGVT S SF RK PGETASV AGS RPAAETRKL+PVLEPGGGD P PGEREAD S G GE+SLERAGETN GHSSS PW+ T APS M+ASTPSSLQLPTSDNANA+TSIGDGSEVL PLTPSEKAAAARGCKRLLDRGRRAFIEERLGL SEIVHFVGSDVTPENALLLGFRAE+GP
Sbjct: 219 RGLVGPTGAGGESGHGEDGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGVSTRARIDIRDLDMGGLPSLTAAGDDRPVVAVAKHLCGVATDLALRRDGGATDGETNREKHQAGHLPFHLLVPRHFPPWLAVLALSLRRSLPNLYRRAMLTLPPRRESRDADDGGHVCNGDPTDAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLMQQGFSARDFEAMRRISAWISLEPDAGARKNNRYPDDRHPGVTFSLSFPRKIPGETASVAAGSLRPAAETRKLQPVLEPGGGDGPWPGEREADSCSGGGPGEAREGIWTEQFSGEGENSLERAGETNGGHSSSSPWHATAAPSLNMSASTPSSLQLPTSDNANASTSIGDGSEVLVPLTPSEKAAAARGCKRLLDRGRRAFIEERLGLCSEIVHFVGSDVTPENALLLGFRAEDGP 676
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Match: tRNA:m(4)X (modification enzyme TRM13 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YXA2_9STRA) HSP 1 Score: 125 bits (314), Expect = 7.610e-28 Identity = 79/229 (34.50%), Postives = 113/229 (49.34%), Query Frame = 1
Query: 40 RHVLQQASLVGHLFLYTAFLTTCRALVGPAGGDSGHVENGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRL--EGVSTRARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRRDGWTTDGETSRENSMLTLPPRPESRHADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWIS 720
RH+ QQAS++GH+ + L+ P S ++E+GAG+ L ++ +P S +V+RS R KA+ + E TRA+IDIR LN+ G+ E + PVVA++KHLCGVATDL+LR TLPP P A + + G+AIA CCHH CNW DY+ FLT GF+ +F+ + +S W +
Sbjct: 219 RHIQQQASILGHM--------EAKGLLHP------------SNTYMELGAGRAMLSLALTQLYPASPFILVDRSGTRGKADQYIAPESKCTRAKIDIRHLNLAGMQ----EAVNTPVVALSKHLCGVATDLSLRA-------------LATTLPPT-------------------TPGALSPHLRGLAIALCCHHACNWEDYIHPSFLTDLGFTPAEFKVLVSLSGWAT 391
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Match: tRNA:m(4)X (modification enzyme TRM13 (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RS80_9STRA) HSP 1 Score: 124 bits (312), Expect = 9.910e-28 Identity = 91/247 (36.84%), Postives = 117/247 (47.37%), Query Frame = 1
Query: 163 SVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAE---NRLEGVS-----------------TRARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRRDGWTTDGETSRENSMLTLPPRPESRHADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQ-GFSARDFEAMRRISAWISLEPDAGARKNNRYPDDRHPGVTSSPSFARKNPGETASVPA 840
S++ VE GAG+G LG +I + P + + VERS VR KA+ R +G + +RAR+DIR LN+ GL + +P+VAVAKHLCGVATDLALR S+LT PPRP+ D V P T V GV IATCCHH C+W+D+ + F + G DF M+R S+W HP T P A N G TA+ A
Sbjct: 146 SLVFVEWGAGRGMLGLAIHSVLPSAPLIFVERSGVRNKADAALRREKGATDGAVASATTSANEQTTFSRARVDIRHLNLAGLDT-----QGKPMVAVAKHLCGVATDLALR--------------SLLTCPPRPDKNPGRDA-RVDRWPSRGYPPC--TAVRGVCIATCCHHCCSWQDFTAKGFFEEDLGLGQDDFRRMQRWSSWAC----------------NHPSDTRVPGDAAANKGVTAAASA 354
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Match: tRNA:m(4)X (modification enzyme TRM13 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI09_9STRA) HSP 1 Score: 123 bits (308), Expect = 1.290e-26 Identity = 93/271 (34.32%), Postives = 129/271 (47.60%), Query Frame = 1
Query: 22 MGFRKGRHVLQQASLVGHLFLYTAFLTTCRALVGPAGGDSGHVENGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGVST---RARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRRDGWTTDGETSRENSMLTLPPRP----ESR-HADDGGHVGNGDPTAAPA--------------------AATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWIS-LEPDAGARK 747
M ++ RH++QQ+S++GH+ R +V P ++EMGAG+G LG ++ +P SD+ +V+ + R + L RA++DIRDL+ G LP +G + VV VAKHLCGV TDLALR + LTL P ++R H+ GG G D A AA + GVAIATCCHH N DYVGR F + GF RDF A+ R+ W + P+ G R+
Sbjct: 241 MDLKRMRHIVQQSSIIGHM--------QRRGMVQP------------EHCYIEMGAGRGLLGLALGLTYPDSDILLVDGAKPRNAGDKGLRAKGNPPFRAKVDIRDLDAGKLP--LPQG--KRVVIVAKHLCGVGTDLALR--------------AALTLAPAAALNGQARDHSGGGGGSGASDCGGAXXXXXXSGSRAXXXXXXXXSRFAAAHGLAGVAIATCCHHCVNLTDYVGRAFAERCGFDKRDFAAIGRLGGWATTFGPEGGGRR 473
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Match: tRNA:m(4)X (modification enzyme TRM13 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X1C0_9STRA) HSP 1 Score: 121 bits (303), Expect = 2.310e-26 Identity = 75/229 (32.75%), Postives = 113/229 (49.34%), Query Frame = 1
Query: 40 RHVLQQASLVGHLFLYTAFLTTCRALVGPAGGDSGHVENGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRL--EGVSTRARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRRDGWTTDGETSRENSMLTLPPRPESRHADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWIS 720
RH+ QQAS++GH+ + L+ PA ++VE+GAG+ L ++ +P S +++R+ R KA+ + E TRA+IDIR LN+ G+ + +PVV ++KHLCGVATDL+LR TLPP AP+ + + G+AIA CCHH C+W DYV + GFS+ +F+ M +S W +
Sbjct: 216 RHIQQQASILGHM--------EAKHLLHPAN------------VYVELGAGRAMLSLALTQMYPASPFVLIDRAGSRGKADQYIATENTCTRAKIDIRHLNLAGMEQVAL----KPVVCLSKHLCGVATDLSLRA-------------LANTLPP-------------------VAPSVMSPHLVGLAIALCCHHACSWEDYVNPQYFLDMGFSSAEFKLMIPLSGWAT 388
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Match: tRNA:m(4)X (modification enzyme TRM13 n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210PGD9_MIZYE) HSP 1 Score: 120 bits (300), Expect = 6.170e-26 Identity = 85/235 (36.17%), Postives = 120/235 (51.06%), Query Frame = 1
Query: 40 RHVLQQASLVGHLFLYTAFLTTCRALVGPAGGDSGHVENGPSVLHVEMGAGKGTLGQSIATAFPGSDVT---MVERSSVRRKAENRLEGVST-----RARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRRDGWTTDGETSRENSMLTLPPRPESRHADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWIS 720
RH QQASL+GHL G +++G + +VE+GAGKG L I A T +V+R VR KA+N+ + + R RIDI +L++G +PS+ + ++RPVVAV KHLCG ATDLA+R T E E + + P S+ +++ G+AIA CCHH C W YVG+DF+ FSARDF M ++S+W +
Sbjct: 112 RHRKQQASLIGHL------------------GKMDLLKDG--MCYVELGAGKGMLSHWIQKASDQCSNTAFVLVDRGHVRYKADNQHKWGESGPKFERIRIDIANLHLGRVPSI--QENERPVVAVGKHLCGGATDLAVRCVTNTLSAEDLGETASVAEPACKRSKPN-----------------TSSKFAGMAIALCCHHRCTWETYVGKDFMKTCSFSARDFMLMCKLSSWAA 307
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Match: tRNA:m(4)X (modification enzyme TRM13 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSY0_9STRA) HSP 1 Score: 119 bits (298), Expect = 1.240e-25 Identity = 76/229 (33.19%), Postives = 112/229 (48.91%), Query Frame = 1
Query: 40 RHVLQQASLVGHLFLYTAFLTTCRALVGPAGGDSGHVENGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRL--EGVSTRARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRRDGWTTDGETSRENSMLTLPPRPESRHADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWIS 720
RH+ QQAS++GH+ D+ H+ + P ++VE+GAG+ L ++ +P S +++R+ R KA+ + E TRA+IDIR LN+GG+ + +PVV ++KHLCGVATDL+LR TLPP A + + G+AIA CCHH C W DYV + F + GF+ DF M +S W +
Sbjct: 232 RHIQQQASILGHM-------------------DAKHLLH-PDHVYVELGAGRAMLSLALTQIYPASPYVLIDRAGSRGKADQYIATENTCTRAKIDIRHLNLGGMDQVV----QKPVVCLSKHLCGVATDLSLRA-------------LANTLPP-------------------VAADTMSPHLVGLAIALCCHHACCWDDYVNQAFFLEMGFTRADFALMVPLSGWAT 404
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Match: uncharacterized (protein LOC110442823 n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B45DB53) HSP 1 Score: 120 bits (300), Expect = 2.720e-25 Identity = 85/235 (36.17%), Postives = 120/235 (51.06%), Query Frame = 1
Query: 40 RHVLQQASLVGHLFLYTAFLTTCRALVGPAGGDSGHVENGPSVLHVEMGAGKGTLGQSIATAFPGSDVT---MVERSSVRRKAENRLEGVST-----RARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRRDGWTTDGETSRENSMLTLPPRPESRHADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWIS 720
RH QQASL+GHL G +++G + +VE+GAGKG L I A T +V+R VR KA+N+ + + R RIDI +L++G +PS+ + ++RPVVAV KHLCG ATDLA+R T E E + + P S+ +++ G+AIA CCHH C W YVG+DF+ FSARDF M ++S+W +
Sbjct: 542 RHRKQQASLIGHL------------------GKMDLLKDG--MCYVELGAGKGMLSHWIQKASDQCSNTAFVLVDRGHVRYKADNQHKWGESGPKFERIRIDIANLHLGRVPSI--QENERPVVAVGKHLCGGATDLAVRCVTNTLSAEDLGETASVAEPACKRSKPN-----------------TSSKFAGMAIALCCHHRCTWETYVGKDFMKTCSFSARDFMLMCKLSSWAA 737
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Match: tRNA:m(4)X (modification enzyme TRM13 n=3 Tax=Xenopus tropicalis TaxID=8364 RepID=F7EU89_XENTR) HSP 1 Score: 117 bits (293), Expect = 5.040e-25 Identity = 83/238 (34.87%), Postives = 116/238 (48.74%), Query Frame = 1
Query: 25 GFRKGRHVLQQASLVGHLFLYTAFLTTCRALVGPAGGDSGHVENGPSVLHVEMGAGKGTLGQSIATAFPGSD---VTMVERSSVRRKAENRLEG-VSTRARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRRDGWTTDGETSRENSMLTLPPRPESRHAD--DGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWIS 720
G +H+ QQAS++GHL +C VE GAG+G L + A GS+ +VER++ R K + + V R +IDI+ L +G +PSL + PV+ + KHLCG TDLALR + NS+ P P+ D + G V N A PA +T VGG+AIA CCHH C+W YVGR+F G R+F +R+S+W +
Sbjct: 168 GDTASKHLKQQASILGHLDNLGLLSGSC--------------------CFVEFGAGRGKLSHWVDIATQGSENINFLLVERATTRFKVDGKQRSSVFERLQIDIQHLCLGRVPSLNEK--QLPVIGIGKHLCGAGTDLALRC--------LMQSNSLANGEPFPKKPRTDTFEQGTVKNECDKANPAYSTC-VGGIAIALCCHHRCDWHHYVGREFFQSLGLDQREFSLFQRMSSWAT 374 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9806.17896.1 >prot_Ecto-sp9_F_contig9806.17896.1 ID=prot_Ecto-sp9_F_contig9806.17896.1|Name=mRNA_Ecto-sp9_F_contig9806.17896.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=448bp MGFRKGRHVLQQASLVGHLFLYTAFLTTCRALVGPAGGDSGHVENGPSVLback to top mRNA from alignment at Ecto-sp9_F_contig9806:379..4605+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9806.17896.1 ID=mRNA_Ecto-sp9_F_contig9806.17896.1|Name=mRNA_Ecto-sp9_F_contig9806.17896.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4227bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9806:379..4605+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9806:379..4605+ >mRNA_Ecto-sp9_F_contig9806.17896.1 ID=mRNA_Ecto-sp9_F_contig9806.17896.1|Name=mRNA_Ecto-sp9_F_contig9806.17896.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2688bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9806:379..4605+ (Ectocarpus species9 EcSCA_722f female)back to top |