mRNA_Ecto-sp9_F_contig9806.17896.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9806.17896.1
Unique NamemRNA_Ecto-sp9_F_contig9806.17896.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Match: tRNA:m(4)X (modification enzyme TRM13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ5_ECTSI)

HSP 1 Score: 691 bits (1784), Expect = 2.650e-245
Identity = 367/431 (85.15%), Postives = 372/431 (86.31%), Query Frame = 1
Query:  109 RALVGPAGGDSGHVENGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGVSTRARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRRDGWTTDGETSRENSMLTLPPRPESRHADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWISLEPDAGARKNNRYPDDRHPGVTSSPSFARKNPGETASVPAGSRRPAAETRKLEPVLEPGGGDYPRPGEREADGWSEDGXXXXXXXXXXXXXXXXGEDSLERAGETNRGHSSSPPWYTTPAPSFMTASTPSSLQLPTSDNANANTSIGDGSEVL-------------APLTPSEKAAAARGCKRLLDRGRRAFIEERLGLRSEIVHFVGSDVTPENALLLGFRAEEGP 1362
            R LVGPAGGD+GH ENGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGVSTRARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALR              +MLTLPPRPESR ADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWISLEPDAGARKNNRYPDDRHPGVTSSPSF RK PGETASV A SRRPAAETRKLEPVLEPGGGD PRPGEREA GWS  G                 EDSLERA ETNRGHSSSPPW+TTPAP+FMTASTPSSL  PTSDNANANTSIGDGS+VL             APLTPSEKA AARGCKRLLDRGRRAFIEERLGLRSEIVHFVGSDVTPENALLLGFRAEEGP
Sbjct:  198 RGLVGPAGGDNGHGENGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGVSTRARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALR--------------AMLTLPPRPESRDADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWISLEPDAGARKNNRYPDDRHPGVTSSPSFCRKTPGETASVAARSRRPAAETRKLEPVLEPGGGDCPRPGEREAYGWSGGGPGEAREGTWTEQLCGEREDSLERARETNRGHSSSPPWHTTPAPTFMTASTPSSLHSPTSDNANANTSIGDGSDVLXXXXXXXXXXXXLAPLTPSEKAVAARGCKRLLDRGRRAFIEERLGLRSEIVHFVGSDVTPENALLLGFRAEEGP 614          
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Match: tRNA:m(4)X (modification enzyme TRM13 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUX2_9PHAE)

HSP 1 Score: 659 bits (1700), Expect = 1.300e-231
Identity = 361/458 (78.82%), Postives = 372/458 (81.22%), Query Frame = 1
Query:  109 RALVGP--AGGDSGHVENGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGVSTRARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRRDGWTTDGETSREN-------------------------------------SMLTLPPRPESRHADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWISLEPDAGARKNNRYPDDRHPGVTSSPSFARKNPGETASVPAGSRRPAAETRKLEPVLEPGGGDYPRPGEREADGWSEDGXXXXXXXXXXXXXXXXGEDSLERAGETNRGHSSSPPWYTTPAPSF-MTASTPSSLQLPTSDNANANTSIGDGSEVLAPLTPSEKAAAARGCKRLLDRGRRAFIEERLGLRSEIVHFVGSDVTPENALLLGFRAEEGP 1362
            R LVGP  AGG+SGH E+GPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGVSTRARIDIRDL+MGGLPSLTA GDDRPVVAVAKHLCGVATDLALRRDG  TDGET+RE                                      +MLTLPPR ESR ADDGGHV NGDPT APAAATTRVGGVAIATCCHHVCNWRDYVGRDFL QQGFSARDFEAMRRISAWISLEPDAGARKNNRYPDDRHPGVT S SF RK PGETASV AGS RPAAETRKL+PVLEPGGGD P PGEREAD  S  G                GE+SLERAGETN GHSSS PW+ T APS  M+ASTPSSLQLPTSDNANA+TSIGDGSEVL PLTPSEKAAAARGCKRLLDRGRRAFIEERLGL SEIVHFVGSDVTPENALLLGFRAE+GP
Sbjct:  219 RGLVGPTGAGGESGHGEDGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGVSTRARIDIRDLDMGGLPSLTAAGDDRPVVAVAKHLCGVATDLALRRDGGATDGETNREKHQAGHLPFHLLVPRHFPPWLAVLALSLRRSLPNLYRRAMLTLPPRRESRDADDGGHVCNGDPTDAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLMQQGFSARDFEAMRRISAWISLEPDAGARKNNRYPDDRHPGVTFSLSFPRKIPGETASVAAGSLRPAAETRKLQPVLEPGGGDGPWPGEREADSCSGGGPGEAREGIWTEQFSGEGENSLERAGETNGGHSSSSPWHATAAPSLNMSASTPSSLQLPTSDNANASTSIGDGSEVLVPLTPSEKAAAARGCKRLLDRGRRAFIEERLGLCSEIVHFVGSDVTPENALLLGFRAEDGP 676          
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Match: tRNA:m(4)X (modification enzyme TRM13 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YXA2_9STRA)

HSP 1 Score: 125 bits (314), Expect = 7.610e-28
Identity = 79/229 (34.50%), Postives = 113/229 (49.34%), Query Frame = 1
Query:   40 RHVLQQASLVGHLFLYTAFLTTCRALVGPAGGDSGHVENGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRL--EGVSTRARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRRDGWTTDGETSRENSMLTLPPRPESRHADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWIS 720
            RH+ QQAS++GH+          + L+ P            S  ++E+GAG+  L  ++   +P S   +V+RS  R KA+  +  E   TRA+IDIR LN+ G+     E  + PVVA++KHLCGVATDL+LR                 TLPP                     P A +  + G+AIA CCHH CNW DY+   FLT  GF+  +F+ +  +S W +
Sbjct:  219 RHIQQQASILGHM--------EAKGLLHP------------SNTYMELGAGRAMLSLALTQLYPASPFILVDRSGTRGKADQYIAPESKCTRAKIDIRHLNLAGMQ----EAVNTPVVALSKHLCGVATDLSLRA-------------LATTLPPT-------------------TPGALSPHLRGLAIALCCHHACNWEDYIHPSFLTDLGFTPAEFKVLVSLSGWAT 391          
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Match: tRNA:m(4)X (modification enzyme TRM13 (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RS80_9STRA)

HSP 1 Score: 124 bits (312), Expect = 9.910e-28
Identity = 91/247 (36.84%), Postives = 117/247 (47.37%), Query Frame = 1
Query:  163 SVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAE---NRLEGVS-----------------TRARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRRDGWTTDGETSRENSMLTLPPRPESRHADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQ-GFSARDFEAMRRISAWISLEPDAGARKNNRYPDDRHPGVTSSPSFARKNPGETASVPA 840
            S++ VE GAG+G LG +I +  P + +  VERS VR KA+    R +G +                 +RAR+DIR LN+ GL +       +P+VAVAKHLCGVATDLALR              S+LT PPRP+     D   V        P    T V GV IATCCHH C+W+D+  + F  +  G    DF  M+R S+W                   HP  T  P  A  N G TA+  A
Sbjct:  146 SLVFVEWGAGRGMLGLAIHSVLPSAPLIFVERSGVRNKADAALRREKGATDGAVASATTSANEQTTFSRARVDIRHLNLAGLDT-----QGKPMVAVAKHLCGVATDLALR--------------SLLTCPPRPDKNPGRDA-RVDRWPSRGYPPC--TAVRGVCIATCCHHCCSWQDFTAKGFFEEDLGLGQDDFRRMQRWSSWAC----------------NHPSDTRVPGDAAANKGVTAAASA 354          
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Match: tRNA:m(4)X (modification enzyme TRM13 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI09_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.290e-26
Identity = 93/271 (34.32%), Postives = 129/271 (47.60%), Query Frame = 1
Query:   22 MGFRKGRHVLQQASLVGHLFLYTAFLTTCRALVGPAGGDSGHVENGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGVST---RARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRRDGWTTDGETSRENSMLTLPPRP----ESR-HADDGGHVGNGDPTAAPA--------------------AATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWIS-LEPDAGARK 747
            M  ++ RH++QQ+S++GH+          R +V P               ++EMGAG+G LG ++   +P SD+ +V+ +  R   +  L        RA++DIRDL+ G LP    +G  + VV VAKHLCGV TDLALR              + LTL P      ++R H+  GG  G  D   A                      AA   + GVAIATCCHH  N  DYVGR F  + GF  RDF A+ R+  W +   P+ G R+
Sbjct:  241 MDLKRMRHIVQQSSIIGHM--------QRRGMVQP------------EHCYIEMGAGRGLLGLALGLTYPDSDILLVDGAKPRNAGDKGLRAKGNPPFRAKVDIRDLDAGKLP--LPQG--KRVVIVAKHLCGVGTDLALR--------------AALTLAPAAALNGQARDHSGGGGGSGASDCGGAXXXXXXSGSRAXXXXXXXXSRFAAAHGLAGVAIATCCHHCVNLTDYVGRAFAERCGFDKRDFAAIGRLGGWATTFGPEGGGRR 473          
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Match: tRNA:m(4)X (modification enzyme TRM13 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X1C0_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.310e-26
Identity = 75/229 (32.75%), Postives = 113/229 (49.34%), Query Frame = 1
Query:   40 RHVLQQASLVGHLFLYTAFLTTCRALVGPAGGDSGHVENGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRL--EGVSTRARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRRDGWTTDGETSRENSMLTLPPRPESRHADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWIS 720
            RH+ QQAS++GH+          + L+ PA             ++VE+GAG+  L  ++   +P S   +++R+  R KA+  +  E   TRA+IDIR LN+ G+  +      +PVV ++KHLCGVATDL+LR                 TLPP                    AP+  +  + G+AIA CCHH C+W DYV   +    GFS+ +F+ M  +S W +
Sbjct:  216 RHIQQQASILGHM--------EAKHLLHPAN------------VYVELGAGRAMLSLALTQMYPASPFVLIDRAGSRGKADQYIATENTCTRAKIDIRHLNLAGMEQVAL----KPVVCLSKHLCGVATDLSLRA-------------LANTLPP-------------------VAPSVMSPHLVGLAIALCCHHACSWEDYVNPQYFLDMGFSSAEFKLMIPLSGWAT 388          
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Match: tRNA:m(4)X (modification enzyme TRM13 n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210PGD9_MIZYE)

HSP 1 Score: 120 bits (300), Expect = 6.170e-26
Identity = 85/235 (36.17%), Postives = 120/235 (51.06%), Query Frame = 1
Query:   40 RHVLQQASLVGHLFLYTAFLTTCRALVGPAGGDSGHVENGPSVLHVEMGAGKGTLGQSIATAFPGSDVT---MVERSSVRRKAENRLEGVST-----RARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRRDGWTTDGETSRENSMLTLPPRPESRHADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWIS 720
            RH  QQASL+GHL                  G    +++G  + +VE+GAGKG L   I  A      T   +V+R  VR KA+N+ +   +     R RIDI +L++G +PS+  + ++RPVVAV KHLCG ATDLA+R    T   E   E + +  P    S+                    +++  G+AIA CCHH C W  YVG+DF+    FSARDF  M ++S+W +
Sbjct:  112 RHRKQQASLIGHL------------------GKMDLLKDG--MCYVELGAGKGMLSHWIQKASDQCSNTAFVLVDRGHVRYKADNQHKWGESGPKFERIRIDIANLHLGRVPSI--QENERPVVAVGKHLCGGATDLAVRCVTNTLSAEDLGETASVAEPACKRSKPN-----------------TSSKFAGMAIALCCHHRCTWETYVGKDFMKTCSFSARDFMLMCKLSSWAA 307          
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Match: tRNA:m(4)X (modification enzyme TRM13 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSY0_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.240e-25
Identity = 76/229 (33.19%), Postives = 112/229 (48.91%), Query Frame = 1
Query:   40 RHVLQQASLVGHLFLYTAFLTTCRALVGPAGGDSGHVENGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRL--EGVSTRARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRRDGWTTDGETSRENSMLTLPPRPESRHADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWIS 720
            RH+ QQAS++GH+                   D+ H+ + P  ++VE+GAG+  L  ++   +P S   +++R+  R KA+  +  E   TRA+IDIR LN+GG+  +      +PVV ++KHLCGVATDL+LR                 TLPP                    A    +  + G+AIA CCHH C W DYV + F  + GF+  DF  M  +S W +
Sbjct:  232 RHIQQQASILGHM-------------------DAKHLLH-PDHVYVELGAGRAMLSLALTQIYPASPYVLIDRAGSRGKADQYIATENTCTRAKIDIRHLNLGGMDQVV----QKPVVCLSKHLCGVATDLSLRA-------------LANTLPP-------------------VAADTMSPHLVGLAIALCCHHACCWDDYVNQAFFLEMGFTRADFALMVPLSGWAT 404          
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Match: uncharacterized (protein LOC110442823 n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B45DB53)

HSP 1 Score: 120 bits (300), Expect = 2.720e-25
Identity = 85/235 (36.17%), Postives = 120/235 (51.06%), Query Frame = 1
Query:   40 RHVLQQASLVGHLFLYTAFLTTCRALVGPAGGDSGHVENGPSVLHVEMGAGKGTLGQSIATAFPGSDVT---MVERSSVRRKAENRLEGVST-----RARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRRDGWTTDGETSRENSMLTLPPRPESRHADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWIS 720
            RH  QQASL+GHL                  G    +++G  + +VE+GAGKG L   I  A      T   +V+R  VR KA+N+ +   +     R RIDI +L++G +PS+  + ++RPVVAV KHLCG ATDLA+R    T   E   E + +  P    S+                    +++  G+AIA CCHH C W  YVG+DF+    FSARDF  M ++S+W +
Sbjct:  542 RHRKQQASLIGHL------------------GKMDLLKDG--MCYVELGAGKGMLSHWIQKASDQCSNTAFVLVDRGHVRYKADNQHKWGESGPKFERIRIDIANLHLGRVPSI--QENERPVVAVGKHLCGGATDLAVRCVTNTLSAEDLGETASVAEPACKRSKPN-----------------TSSKFAGMAIALCCHHRCTWETYVGKDFMKTCSFSARDFMLMCKLSSWAA 737          
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Match: tRNA:m(4)X (modification enzyme TRM13 n=3 Tax=Xenopus tropicalis TaxID=8364 RepID=F7EU89_XENTR)

HSP 1 Score: 117 bits (293), Expect = 5.040e-25
Identity = 83/238 (34.87%), Postives = 116/238 (48.74%), Query Frame = 1
Query:   25 GFRKGRHVLQQASLVGHLFLYTAFLTTCRALVGPAGGDSGHVENGPSVLHVEMGAGKGTLGQSIATAFPGSD---VTMVERSSVRRKAENRLEG-VSTRARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRRDGWTTDGETSRENSMLTLPPRPESRHAD--DGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWIS 720
            G    +H+ QQAS++GHL        +C                      VE GAG+G L   +  A  GS+     +VER++ R K + +    V  R +IDI+ L +G +PSL  +    PV+ + KHLCG  TDLALR           + NS+    P P+    D  + G V N    A PA +T  VGG+AIA CCHH C+W  YVGR+F    G   R+F   +R+S+W +
Sbjct:  168 GDTASKHLKQQASILGHLDNLGLLSGSC--------------------CFVEFGAGRGKLSHWVDIATQGSENINFLLVERATTRFKVDGKQRSSVFERLQIDIQHLCLGRVPSLNEK--QLPVIGIGKHLCGAGTDLALRC--------LMQSNSLANGEPFPKKPRTDTFEQGTVKNECDKANPAYSTC-VGGIAIALCCHHRCDWHHYVGREFFQSLGLDQREFSLFQRMSSWAT 374          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9806.17896.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
tRNA:m(4)X2.650e-24585.15modification enzyme TRM13 n=1 Tax=Ectocarpus silic... [more]
tRNA:m(4)X1.300e-23178.82modification enzyme TRM13 n=1 Tax=Ectocarpus sp. C... [more]
tRNA:m(4)X7.610e-2834.50modification enzyme TRM13 n=1 Tax=Achlya hypogyna ... [more]
tRNA:m(4)X9.910e-2836.84modification enzyme TRM13 (Fragment) n=1 Tax=Rhizo... [more]
tRNA:m(4)X1.290e-2634.32modification enzyme TRM13 n=1 Tax=Tribonema minus ... [more]
tRNA:m(4)X2.310e-2632.75modification enzyme TRM13 n=1 Tax=Aphanomyces eute... [more]
tRNA:m(4)X6.170e-2636.17modification enzyme TRM13 n=1 Tax=Mizuhopecten yes... [more]
tRNA:m(4)X1.240e-2533.19modification enzyme TRM13 n=1 Tax=Aphanomyces stel... [more]
uncharacterized2.720e-2536.17protein LOC110442823 n=1 Tax=Mizuhopecten yessoens... [more]
tRNA:m(4)X5.040e-2534.87modification enzyme TRM13 n=3 Tax=Xenopus tropical... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9806contigEcto-sp9_F_contig9806:379..4605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score698.7
Seed ortholog evalue1.7e-198
Seed eggNOG ortholog2880.D7FVJ5
Preferred nameTRMT13
KEGG koko:K15446
GOsGO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008175,GO:0009451,GO:0009628,GO:0009651,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0071704,GO:0090304,GO:0106050,GO:0140098,GO:0140101,GO:1901360
EggNOG free text desc.tRNA methylation
EggNOG OGsKOG2811@1,KOG2811@2759
EC2.1.1.225
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionMethyltransferase TRM13
Ec32 orthologEc-15_003540.2
Exons5
Model size1365
Cds size1344
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9806.17896.1prot_Ecto-sp9_F_contig9806.17896.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9806 400..4605 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931073.6984499-UTR-Ecto-sp9_F_contig9806:378..3991622931073.6984499-UTR-Ecto-sp9_F_contig9806:378..399Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9806 379..399 +
1692279020.7148101-UTR-Ecto-sp9_F_contig9806:378..3991692279020.7148101-UTR-Ecto-sp9_F_contig9806:378..399Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9806 379..399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931073.7243366-CDS-Ecto-sp9_F_contig9806:399..4561622931073.7243366-CDS-Ecto-sp9_F_contig9806:399..456Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9806 400..456 +
1692279020.72952-CDS-Ecto-sp9_F_contig9806:399..4561692279020.72952-CDS-Ecto-sp9_F_contig9806:399..456Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9806 400..456 +
1622931073.7472486-CDS-Ecto-sp9_F_contig9806:1115..13131622931073.7472486-CDS-Ecto-sp9_F_contig9806:1115..1313Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9806 1116..1313 +
1692279020.7387078-CDS-Ecto-sp9_F_contig9806:1115..13131692279020.7387078-CDS-Ecto-sp9_F_contig9806:1115..1313Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9806 1116..1313 +
1622931073.770075-CDS-Ecto-sp9_F_contig9806:2382..25841622931073.770075-CDS-Ecto-sp9_F_contig9806:2382..2584Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9806 2383..2584 +
1692279020.75055-CDS-Ecto-sp9_F_contig9806:2382..25841692279020.75055-CDS-Ecto-sp9_F_contig9806:2382..2584Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9806 2383..2584 +
1622931073.788343-CDS-Ecto-sp9_F_contig9806:3116..33041622931073.788343-CDS-Ecto-sp9_F_contig9806:3116..3304Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9806 3117..3304 +
1692279020.7626746-CDS-Ecto-sp9_F_contig9806:3116..33041692279020.7626746-CDS-Ecto-sp9_F_contig9806:3116..3304Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9806 3117..3304 +
1622931073.8123434-CDS-Ecto-sp9_F_contig9806:3906..46051622931073.8123434-CDS-Ecto-sp9_F_contig9806:3906..4605Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9806 3907..4605 +
1692279020.771637-CDS-Ecto-sp9_F_contig9806:3906..46051692279020.771637-CDS-Ecto-sp9_F_contig9806:3906..4605Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9806 3907..4605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9806.17896.1

>prot_Ecto-sp9_F_contig9806.17896.1 ID=prot_Ecto-sp9_F_contig9806.17896.1|Name=mRNA_Ecto-sp9_F_contig9806.17896.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=448bp
MGFRKGRHVLQQASLVGHLFLYTAFLTTCRALVGPAGGDSGHVENGPSVL
HVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGVSTRARID
IRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRRDGWTTDGETSR
ENSMLTLPPRPESRHADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHV
CNWRDYVGRDFLTQQGFSARDFEAMRRISAWISLEPDAGARKNNRYPDDR
HPGVTSSPSFARKNPGETASVPAGSRRPAAETRKLEPVLEPGGGDYPRPG
EREADGWSEDGPGEAREGTWTEQFSGEGEDSLERAGETNRGHSSSPPWYT
TPAPSFMTASTPSSLQLPTSDNANANTSIGDGSEVLAPLTPSEKAAAARG
CKRLLDRGRRAFIEERLGLRSEIVHFVGSDVTPENALLLGFRAEEGP*
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mRNA from alignment at Ecto-sp9_F_contig9806:379..4605+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9806.17896.1 ID=mRNA_Ecto-sp9_F_contig9806.17896.1|Name=mRNA_Ecto-sp9_F_contig9806.17896.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4227bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9806:379..4605+ (Ectocarpus species9 EcSCA_722f female)
AGGGCTCGAACCGAAGACTGCATGGGTTTCCGCAAAGGGAGGCATGTGCT GCAGCAGGCGTCGCTGGTTGGTCACCTCGTCAAAAGGCGAGCCGACAGAG TTCACGGACCCCACGGGTTTATTCTCGCTACATACCGAGGGGGGCGGGGT TCTTGTGGTTTGTTGAGCTTGGGCGGTGGTCTGGCCTCTGTTTTTTTTTT GTTCCCCGTTGGCGCCTTTCGCTTGATCTGTAACGTGCGACACTTGATTT TCAGCGGAGGATGGGATTTAGTGAAGGAGGCGTGTGCGTTTGTCAGTGGT CTTCGGGATGATTCATTGTGGTCGTGAAAGCTTTAACCTCCCCTTCTACA CGCGACCGCCGAGCTGTGAAGAGGTGGAAACCAACCCGATGTACTTCTAT CTTCACCTTCTGCTGCACGGAGAGGATCGGAGTTGGAGGGCGGCGGCTGT CGTCATCATCGCGGAGAGACGCGGAAACTATCCACACAGGAATTACGCAA TTAATAATCTCTTCCAATTTCCCGTGTAACCCAGGAGTATTGATAACCTC CACCAGCGGAATTCTGTCCGCACCTTTTGCTGTAGTCCCGACAACTCAAT ATCGCTCCATCATGTATTTGTTCTTCTTTCCTTCAAAACTGCAACGTAAC GAATGCATCTATATATCTATATCCACAGAAAAGAGCCCGCGGGAAAAGTA AATCCAAGGCGGTAACACCAAAAGTGATCAGAGTAAGTTTTTGTATACCG CTTTTCTGACAACTTGCAGGGCGCTCGTTGGTCCCGCCGGTGGTGACAGC GGTCACGTCGAGAACGGCCCGAGCGTGCTGCACGTGGAGATGGGCGCGGG CAAGGGCACCCTGGGGCAGTCCATCGCCACCGCCTTTCCAGGGTCCGACG TTACCATGGTTGAGCGCTCCTCCGTTCGACGAAAGGTGCGACAAAAGAGA TCTTGTCCTAGAGGCCGGGGGTAGAGGGAAGGGGTACATCCCCCCCACCA CGGGTTTCAACCGAGGCAGTGGCCATGGATGGGTGTAGTTGTACGAAAAA GATACACTGAAAAGTGCAGTACTCGACAGACACTGAAACACGTGTAGCAC ACGTCCCACCACGAAAAAATGGGGGGACTGTCGCCACAATAAATAGGAAG AAAACACACACACGACACAATTTGGCGTTTGGTTGTTCTGTTCTGATTTC GGTCTCCTCTCTTGTCAGTGATGTTTATGTTATTCTGTTGTAGTAGGATG AGTTCATTGCAATCCGCGTCCCCTTACGCACACTTGCTCGCGCGCCCCTA AGCCTCTACAACAATGTTAGACGGGAATATTTGTGCTTCGGCCGGTTGAC CGCTTTTCCCCGGAGACTTCGCCCCCCGGATGCCACGATGGCGCGCGATG CACCTAAGGGCCTGGGGTTACACTATATGTTGCTGTTATGTGTGACACTT TCATCTATCTCCATGATAGCGCCATTTTCGCTACGTGGCGCTTCGTGATT TACTTAGGTGAAACGTTCGTATGTGAGGTACGTGTGACGGTAATACAAGC CTTTGACGTCGTGCGTATGAGTTGGGGCACTCAAAAGCACCGACAGCGGC AAGTACACCTACAAGAAGCTCGTTTTTTATATGTTTTTCCGTTTTTTTGG TCGACAGGTTCGTGCGCATTGCCGACCCCCGAGATTTTTTACTACAGGTG ACGGGGCCGCTGATGTCATTAACCTTTTGTTCTGTTAGGATCTAGCCGGA TACTATTATACTTCTCGTTTTGTGGCGGGGGCGGGGAGAGGGGGGCCGAT GAAATCGAACCATTCACAAGGTCGCTGCATATTTCTCTCCTTCGCTGTTT CCCAGCTACAGACCAACCCGGGTGATGGATTTATTCAAACAACAAGCAGA CAGTGCAGCGGCACGATGTGGCTTGTGTAGTGTTTTGCCTCCCTTCCTCC CCGCCCACTTTCATATTTCTGGTGCGATACGATTCAAAGCATATTACTGT TCAGGCGGAGAATCGTCTGGAGGGCGTGAGCACGAGGGCGAGGATCGACA TCCGCGACCTCAACATGGGCGGCCTGCCTTCCCTCACGGCCGAGGGGGAC GACAGACCGGTCGTAGCGGTCGCCAAGCACCTGTGTGGGGTGGCGACCGA CTTAGCTCTCAGGCGAGATGGATGGACGACCGACGGAGAGACTAGCAGAG AGAACTGTCGAAAGGGAGTAGGCGGACTATTGGAGAGACGGACAGACAGG CAGAGAGAGGGAGGTAGAGGTAGAGATAGAGACAGAGGCAGAGACGCAGA GATAGAGAGAGGCAGAGACATAACTAGAGACAGAGACAGACACAGAAACA CACAGAAAGAGAGACAGACAGACAGACAGACAGAGGAACAGATAGGTGGA GGGGGGGGTTGACACTTGCGTGGGAGAGAAAAGAGCGCTGCTTTCCTTCA CAGGACCTTCACCAACACCAGGTGCTCGTTGGTACTAACAACGCTGCCGT GCTCCTACCCTTCGTTCGACACCCTAGGCGCACAATGGTTTCGGCCAACG TTTCGCAACAGAAAACAATGGCGCGAGTCGACCATGACGTAACTTTCTAG CAGAACCCCTCTGAACACGGTTCATCTCAATGACCCAAGCAGCTGCCATT TCACCTCCTCGTACCCCGGCACTGTCTCCCTTGACTGGCTGTCCTCGCGC TGAATCTCCGTGTTCACTCCCCGACTTCTATCGCAGAGCAATGCTTACCC TTCCCCCCCGACCGGAGAGCCGTCACGCCGACGACGGTGGCCACGTTGGC AACGGTGACCCAACGGCCGCCCCTGCGGCGGCGACGACAAGGGTGGGAGG GGTTGCGATCGCCACGTGCTGTCACCACGTGTGTAACTGGAGGGACTACG TGGGCAGGGACTTCTTGACGCAGCAGGTTCGGCCGCAGCTGCGTATAGGT GCCTGGGGCGGTGTGTGTCCATTAGCAGGCTTATCTCGCTACTAACCGTA ACGCCGCCGTACTCGGGATGAAAAACAAACTGCTCACGTTGTGGACTTGA TCGTATGGAGTTTTTTTCTGCGTTTGTGGTAGGTGGTGGTGGGTGTTGTG GCGAGTTCACGACTGCTCGGGAAAATGACAACCGTTCTTCGCCCTCCTGT ACGATCGGGAGAAAGACGCAGTGGCTCTTGGTCTCCATCCCCATGTTCTG AACATTCACTTCTCTCTTGGTGTTGCTCCCGTTCTTGCTGCATGCATGGT GTTGTTGTGTTGGTTCGTGCATGTTCCCATTCCGGGTCGTGTTAGTTTTG TGCCTCGATCAATCAGCTGAGTGTTTGTCGCTGGGTTGGAAAGCAAAGCG CCCAGCAAAACACGACACGCCACGCCACCAAAAGAGCGTGTGCTTGAGGG TAGATCCAAGCCGGTCTGCCTTCTTGCTAGACACGTGTGTGTCCGCTCGC GAGCTTACCGCCCCCTCCATGGTCATGTTGTCGACTATCTTGCCTTGTGT TTCTGTCGATTTGTTTTGTTTCCTCAAGGGTTTCTCTGCACGCGACTTCG AAGCCATGCGGCGAATCTCCGCCTGGATCAGCCTGGAACCAGACGCCGGT GCCCGGAAGAACAACAGATACCCCGACGACAGACACCCCGGGGTAACTTC TTCGCCGTCTTTTGCTCGGAAAAATCCCGGAGAAACTGCGTCGGTGCCGG CAGGATCACGACGCCCGGCAGCTGAAACGAGAAAGCTAGAACCAGTCCTT GAACCAGGCGGTGGTGATTATCCGCGGCCCGGAGAACGCGAGGCTGACGG CTGGAGTGAAGATGGGCCTGGAGAAGCACGAGAAGGGACATGGACAGAAC AATTCAGTGGGGAAGGAGAAGACAGTCTCGAGCGTGCCGGAGAAACAAAC AGAGGCCACTCGTCATCTCCGCCATGGTACACAACGCCGGCGCCATCGTT TATGACCGCGTCAACACCGTCGTCGTTGCAATTGCCCACCAGCGATAACG CCAACGCTAACACTAGCATCGGCGACGGCAGCGAGGTGTTGGCCCCCCTC ACGCCGTCCGAGAAGGCGGCGGCAGCACGCGGGTGCAAGCGGCTGCTGGA CAGGGGCAGGAGGGCCTTCATCGAGGAGCGCCTTGGGCTGCGTTCGGAGA TTGTGCACTTCGTCGGCAGTGACGTCACCCCGGAGAACGCCCTCCTCTTG GGGTTTCGAGCCGAGGAGGGGCCTTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9806:379..4605+

>mRNA_Ecto-sp9_F_contig9806.17896.1 ID=mRNA_Ecto-sp9_F_contig9806.17896.1|Name=mRNA_Ecto-sp9_F_contig9806.17896.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2688bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9806:379..4605+ (Ectocarpus species9 EcSCA_722f female)
ATGGGTTTCCGCAAAGGGAGGCATGTGCTGCAGCAGGCGTCGCTGGTTGG
TCACCTCATGGGTTTCCGCAAAGGGAGGCATGTGCTGCAGCAGGCGTCGC
TGGTTGGTCACCTCTTTTTGTATACCGCTTTTCTGACAACTTGCAGGGCG
CTCGTTGGTCCCGCCGGTGGTGACAGCGGTCACGTCGAGAACGGCCCGAG
CGTGCTGCACGTGGAGATGGGCGCGGGCAAGGGCACCCTGGGGCAGTCCA
TCGCCACCGCCTTTCCAGGGTCCGACGTTACCATGGTTGAGCGCTCCTCC
GTTCGACGAAAGTTTTTGTATACCGCTTTTCTGACAACTTGCAGGGCGCT
CGTTGGTCCCGCCGGTGGTGACAGCGGTCACGTCGAGAACGGCCCGAGCG
TGCTGCACGTGGAGATGGGCGCGGGCAAGGGCACCCTGGGGCAGTCCATC
GCCACCGCCTTTCCAGGGTCCGACGTTACCATGGTTGAGCGCTCCTCCGT
TCGACGAAAGGCGGAGAATCGTCTGGAGGGCGTGAGCACGAGGGCGAGGA
TCGACATCCGCGACCTCAACATGGGCGGCCTGCCTTCCCTCACGGCCGAG
GGGGACGACAGACCGGTCGTAGCGGTCGCCAAGCACCTGTGTGGGGTGGC
GACCGACTTAGCTCTCAGGCGAGATGGATGGACGACCGACGGAGAGACTA
GCAGAGAGAACTGCGGAGAATCGTCTGGAGGGCGTGAGCACGAGGGCGAG
GATCGACATCCGCGACCTCAACATGGGCGGCCTGCCTTCCCTCACGGCCG
AGGGGGACGACAGACCGGTCGTAGCGGTCGCCAAGCACCTGTGTGGGGTG
GCGACCGACTTAGCTCTCAGGCGAGATGGATGGACGACCGACGGAGAGAC
TAGCAGAGAGAACTCAATGCTTACCCTTCCCCCCCGACCGGAGAGCCGTC
ACGCCGACGACGGTGGCCACGTTGGCAACGGTGACCCAACGGCCGCCCCT
GCGGCGGCGACGACAAGGGTGGGAGGGGTTGCGATCGCCACGTGCTGTCA
CCACGTGTGTAACTGGAGGGACTACGTGGGCAGGGACTTCTTGACGCAGC
AGCAATGCTTACCCTTCCCCCCCGACCGGAGAGCCGTCACGCCGACGACG
GTGGCCACGTTGGCAACGGTGACCCAACGGCCGCCCCTGCGGCGGCGACG
ACAAGGGTGGGAGGGGTTGCGATCGCCACGTGCTGTCACCACGTGTGTAA
CTGGAGGGACTACGTGGGCAGGGACTTCTTGACGCAGCAGGGTTTCTCTG
CACGCGACTTCGAAGCCATGCGGCGAATCTCCGCCTGGATCAGCCTGGAA
CCAGACGCCGGTGCCCGGAAGAACAACAGATACCCCGACGACAGACACCC
CGGGGTAACTTCTTCGCCGTCTTTTGCTCGGAAAAATCCCGGAGAAACTG
CGTCGGTGCCGGCAGGATCACGACGCCCGGCAGCTGAAACGAGAAAGCTA
GAACCAGTCCTTGAACCAGGCGGTGGTGATTATCCGCGGCCCGGAGAACG
CGAGGCTGACGGCTGGAGTGAAGATGGGCCTGGAGAAGCACGAGAAGGGA
CATGGACAGAACAATTCAGTGGGGAAGGAGAAGACAGTCTCGAGCGTGCC
GGAGAAACAAACAGAGGCCACTCGTCATCTCCGCCATGGTACACAACGCC
GGCGCCATCGTTTATGACCGCGTCAACACCGTCGTCGTTGCAATTGCCCA
CCAGCGATAACGCCAACGCTAACACTAGCATCGGCGACGGCAGCGAGGTG
TTGGCCCCCCTCACGCCGTCCGAGAAGGCGGCGGCAGCACGCGGGTGCAA
GCGGCTGCTGGACAGGGGCAGGAGGGCCTTCATCGAGGAGCGCCTTGGGC
TGCGTTCGGAGATTGTGCACTTCGTCGGCAGTGACGTCACCCCGGAGAAC
GCCCTCCTCTTGGGGTTTCGAGCCGAGGAGGGGCCTTAGGGTTTCTCTGC
ACGCGACTTCGAAGCCATGCGGCGAATCTCCGCCTGGATCAGCCTGGAAC
CAGACGCCGGTGCCCGGAAGAACAACAGATACCCCGACGACAGACACCCC
GGGGTAACTTCTTCGCCGTCTTTTGCTCGGAAAAATCCCGGAGAAACTGC
GTCGGTGCCGGCAGGATCACGACGCCCGGCAGCTGAAACGAGAAAGCTAG
AACCAGTCCTTGAACCAGGCGGTGGTGATTATCCGCGGCCCGGAGAACGC
GAGGCTGACGGCTGGAGTGAAGATGGGCCTGGAGAAGCACGAGAAGGGAC
ATGGACAGAACAATTCAGTGGGGAAGGAGAAGACAGTCTCGAGCGTGCCG
GAGAAACAAACAGAGGCCACTCGTCATCTCCGCCATGGTACACAACGCCG
GCGCCATCGTTTATGACCGCGTCAACACCGTCGTCGTTGCAATTGCCCAC
CAGCGATAACGCCAACGCTAACACTAGCATCGGCGACGGCAGCGAGGTGT
TGGCCCCCCTCACGCCGTCCGAGAAGGCGGCGGCAGCACGCGGGTGCAAG
CGGCTGCTGGACAGGGGCAGGAGGGCCTTCATCGAGGAGCGCCTTGGGCT
GCGTTCGGAGATTGTGCACTTCGTCGGCAGTGACGTCACCCCGGAGAACG
CCCTCCTCTTGGGGTTTCGAGCCGAGGAGGGGCCTTAG
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