mRNA_Ecto-sp9_F_contig9798.17883.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9798.17883.1
Unique NamemRNA_Ecto-sp9_F_contig9798.17883.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9798.17883.1 vs.
Match: Mcl1_mid (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI2_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.010e-13
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 LETMNDLRGSPSPVSSKRPPLSRLSSFSAEARTKNRNDRNVL 128
            LETMNDLRGSPSPVSSKRPPLSRLSSFSAEARTKNRNDRNVL
Sbjct:  398 LETMNDLRGSPSPVSSKRPPLSRLSSFSAEARTKNRNDRNVL 439
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BLAST of mRNA_Ecto-sp9_F_contig9798.17883.1 vs.
Match: Mcl1_mid (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G152_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 1.360e-13
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 LETMNDLRGSPSPVSSKRPPLSRLSSFSAEARTKNRNDRNVL 128
            LETMNDLRGSPSPVSSKRPPLSRLSSFSAEARTKNRNDRNVL
Sbjct:  931 LETMNDLRGSPSPVSSKRPPLSRLSSFSAEARTKNRNDRNVL 972
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9798.17883.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Mcl1_mid1.010e-13100.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Mcl1_mid1.360e-13100.00domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9798contigEcto-sp9_F_contig9798:2..636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size635
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9798.17883.1prot_Ecto-sp9_F_contig9798.17883.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9798 149..526 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931071.1863515-UTR-Ecto-sp9_F_contig9798:1..1481622931071.1863515-UTR-Ecto-sp9_F_contig9798:1..148Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9798 2..148 +
1692279019.3002355-UTR-Ecto-sp9_F_contig9798:1..1481692279019.3002355-UTR-Ecto-sp9_F_contig9798:1..148Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9798 2..148 +
1622931071.229765-UTR-Ecto-sp9_F_contig9798:526..6361622931071.229765-UTR-Ecto-sp9_F_contig9798:526..636Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9798 527..636 +
1692279019.3304925-UTR-Ecto-sp9_F_contig9798:526..6361692279019.3304925-UTR-Ecto-sp9_F_contig9798:526..636Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9798 527..636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931071.2048163-CDS-Ecto-sp9_F_contig9798:148..5261622931071.2048163-CDS-Ecto-sp9_F_contig9798:148..526Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9798 149..526 +
1692279019.3178818-CDS-Ecto-sp9_F_contig9798:148..5261692279019.3178818-CDS-Ecto-sp9_F_contig9798:148..526Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9798 149..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9798.17883.1

>prot_Ecto-sp9_F_contig9798.17883.1 ID=prot_Ecto-sp9_F_contig9798.17883.1|Name=mRNA_Ecto-sp9_F_contig9798.17883.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=126bp
MRSVLCDDKETTVTSGGLVWSGHAQHNISMYTFIILRLGAWKTIMPRFAG
QLVASRTRRVRVVFPSECVRIFRTHVASFSRFGPAGPLLRTHLEDGGGGG
SGVAWLSLGLRGFDAWSWLIVRHGT*
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mRNA from alignment at Ecto-sp9_F_contig9798:2..636+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9798.17883.1 ID=mRNA_Ecto-sp9_F_contig9798.17883.1|Name=mRNA_Ecto-sp9_F_contig9798.17883.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=635bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9798:2..636+ (Ectocarpus species9 EcSCA_722f female)
TGTTGGAGACGATGAACGACCTCCGGGGGTCCCCGTCCCCCGTGTCCTCG
AAGCGGCCCCCGCTAAGCCGGCTGTCGTCCTTCTCGGCGGAAGCTCGCAC
CAAGAACAGGAACGACCGGAACGTTCTGTGAAGATCTCAGGAACGTTATG
AGGAGCGTTCTCTGTGACGACAAGGAAACTACCGTGACCAGCGGAGGACT
CGTTTGGTCCGGTCACGCACAACATAATATCTCTATGTACACATTTATTA
TTTTGCGGCTTGGTGCATGGAAAACTATCATGCCACGTTTTGCTGGCCAG
CTTGTCGCTTCCCGCACGCGGCGCGTGCGTGTAGTGTTCCCGTCGGAATG
CGTTCGAATTTTCCGCACACATGTAGCTTCGTTCAGTAGATTCGGGCCTG
CGGGCCCACTTTTACGCACCCATCTCGAAGACGGCGGTGGTGGTGGTAGT
GGTGTGGCGTGGTTATCTTTGGGCCTACGCGGATTCGATGCATGGTCGTG
GTTAATAGTCAGACATGGAACTTGAAAGGCGACTATGGGTAGTAGGTACG
GTAAGTGGGCCTAAGGCTCGAAATGAGGTAAGTCTCAGCACCTGACCTCT
CGTCATAGCGCCCATTTCTTTGACGGGTATTTGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9798:2..636+

>mRNA_Ecto-sp9_F_contig9798.17883.1 ID=mRNA_Ecto-sp9_F_contig9798.17883.1|Name=mRNA_Ecto-sp9_F_contig9798.17883.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=756bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9798:2..636+ (Ectocarpus species9 EcSCA_722f female)
ATGAGGAGCGTTCTCTGTGACGACAAGGAAACTACCGTGACCAGCGGAGG
ACTCGTTTGGTCCGGTCACGCACAACATAATATCTCTATGTACACATTTA
TTATTTTGCGGCTTGGTGCATGGAAAACTATCATGCCACGTTTTGCTGGC
CAGCTTGTCGCTTCCCGCACGCGGCGCGTGCGTGTAGTGTTCCCGTCGGA
ATGCGTTCGAATTTTCCGCACACATGTAGCTTCGTTCAGTAGATTCGGGC
CTGCGGGCCCACTTTTACGCACCCATCTCGAAGACGGCGGTGGTGGTGGT
AGTGGTGTGGCGTGGTTATCTTTGGGCCTACGCGGATTCGATGCATGGTC
GTGGTTAATAGTCAGACATGGAACTTGAATGAGGAGCGTTCTCTGTGACG
ACAAGGAAACTACCGTGACCAGCGGAGGACTCGTTTGGTCCGGTCACGCA
CAACATAATATCTCTATGTACACATTTATTATTTTGCGGCTTGGTGCATG
GAAAACTATCATGCCACGTTTTGCTGGCCAGCTTGTCGCTTCCCGCACGC
GGCGCGTGCGTGTAGTGTTCCCGTCGGAATGCGTTCGAATTTTCCGCACA
CATGTAGCTTCGTTCAGTAGATTCGGGCCTGCGGGCCCACTTTTACGCAC
CCATCTCGAAGACGGCGGTGGTGGTGGTAGTGGTGTGGCGTGGTTATCTT
TGGGCCTACGCGGATTCGATGCATGGTCGTGGTTAATAGTCAGACATGGA
ACTTGA
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