mRNA_Ecto-sp9_F_contig9791.17880.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Match: Uncharacterized (protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI) HSP 1 Score: 196 bits (497), Expect = 9.290e-57 Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 3
Query: 3 IHLLAQFVEHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGELTNLVGECDNAEA 269
IHLLAQFV+HFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGEL NLVGECDNAEA
Sbjct: 398 IHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGELDNLVGECDNAEA 486
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI) HSP 1 Score: 190 bits (482), Expect = 8.590e-53 Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 3
Query: 3 IHLLAQFVEHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGELTNLVGECDNAE 266
IHLLAQFV+HFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACT NDLRTRYEEEYPMGEL NLVGECDN E
Sbjct: 355 IHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTKNDLRTRYEEEYPMGELDNLVGECDNEE 442
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI) HSP 1 Score: 168 bits (426), Expect = 1.980e-46 Identity = 74/88 (84.09%), Postives = 79/88 (89.77%), Query Frame = 3
Query: 3 IHLLAQFVEHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGELTNLVGECDNAE 266
IHLL+QFV++FDHRDRRGY+GNIEGAPMCGCIEEMP VSEADCTTYD +P REGKFTACT NDLRTRYE EYP GEL NLV CDNAE
Sbjct: 384 IHLLSQFVQNFDHRDRRGYYGNIEGAPMCGCIEEMPVVSEADCTTYDTDPEREGKFTACTKNDLRTRYEAEYPTGELANLVDTCDNAE 471
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L319_9PHAE) HSP 1 Score: 129 bits (324), Expect = 8.220e-32 Identity = 68/133 (51.13%), Postives = 75/133 (56.39%), Query Frame = 3
Query: 3 IHLLAQFVEHFDHRDRRGYFG---------------------------------------------NIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGELTNLVGECDNAE 266
IHLL+QFV+ FDHRDRRGY+G +IEGAPM GC+EEMP VSEAD TTYD +P REGKFTACT NDL TRY E+YP GEL NLVG DNAE
Sbjct: 311 IHLLSQFVQKFDHRDRRGYYGKYITVGKAAHNVIMVNGRTTGPGEDNTNNPLSPPPNVSHVILVVTSIEGAPMYGCVEEMPVVSEADGTTYDTDPEREGKFTACTTNDLCTRYAEDYPTGELANLVGTYDNAE 443
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI) HSP 1 Score: 123 bits (308), Expect = 1.160e-29 Identity = 53/86 (61.63%), Postives = 63/86 (73.26%), Query Frame = 3
Query: 3 IHLLAQFVEHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGELTNLVGECDN 260
IHLLAQ+V+ FDH +GY+GNIEGAPMCGC E+MP+VS+ADCT Y E + C NDLRTRY+ YP G+L NLVG CDN
Sbjct: 332 IHLLAQYVQTFDHIGNKGYYGNIEGAPMCGCAEDMPEVSKADCTNYSPTEEDEDRIRGCDPNDLRTRYDVLYPDGDLDNLVGRCDN 417
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT81_9PHAE) HSP 1 Score: 114 bits (285), Expect = 1.870e-27 Identity = 54/68 (79.41%), Postives = 56/68 (82.35%), Query Frame = 3
Query: 81 PMCGCIEEMP-----QVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGELTNLVGECDNAEA 269
P G E P +VSEADCTTYDNEPGREGKFTACT NDLRTRYEEEYPMGEL+NLVGECDNAEA
Sbjct: 202 PSMGETTEYPGGSEGEVSEADCTTYDNEPGREGKFTACTKNDLRTRYEEEYPMGELSNLVGECDNAEA 269
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 8.810e-18 Identity = 43/87 (49.43%), Postives = 52/87 (59.77%), Query Frame = 3
Query: 3 IHLLAQFVEHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGELTNL-VGECDN 260
I LA V +H D + Y GNI GAP+C C+EEMP+VS ADCT Y F AC+ NDLR Y+E YP G +L V +CDN
Sbjct: 114 IKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELYPTGRGRDLLVKKCDN 200
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 2.900e-17 Identity = 43/87 (49.43%), Postives = 52/87 (59.77%), Query Frame = 3
Query: 3 IHLLAQFVEHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGELTNL-VGECDN 260
I LA V +H D + Y GNI GAP+C C+EEMP+VS ADCT Y F AC+ NDLR Y+E YP G +L V +CDN
Sbjct: 178 IKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELYPTGRGRDLLVKKCDN 264
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G6_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 9.550e-11 Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 3
Query: 12 LAQFVEHFDHRDRRG-YFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEY--PMGELT-NLVGECDNA 263
L +V++ + G Y+G++EGAP CGCIEEMPQVS A+C+ +D + C L ++Y P GE+ NLV CDNA
Sbjct: 98 LYHYVKNIGRTEEEGGYYGSVEGAPECGCIEEMPQVSFAECSRFDIDG-----IVGCGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA 180
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS4_ECTSI) HSP 1 Score: 66.2 bits (160), Expect = 1.650e-10 Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 3
Query: 12 LAQFVEHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLR 197
LA V + H + +GYFG+I GAP+C C+E MP+VS +DC+ Y + F AC NDLR
Sbjct: 54 LALDVAYNHHVEEKGYFGHIPGAPVCDCLERMPEVSRSDCSQYRPAHLKGSDFMACPKNDLR 115 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9791.17880.1 >prot_Ecto-sp9_F_contig9791.17880.1 ID=prot_Ecto-sp9_F_contig9791.17880.1|Name=mRNA_Ecto-sp9_F_contig9791.17880.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=147bp TSTSWRSSWSTSTTGTGGATSETSRVRPCAAASRKCRRFPRPTARRTTTSback to top mRNA from alignment at Ecto-sp9_F_contig9791:728..1529+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9791.17880.1 ID=mRNA_Ecto-sp9_F_contig9791.17880.1|Name=mRNA_Ecto-sp9_F_contig9791.17880.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=802bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9791:728..1529+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9791:728..1529+ >mRNA_Ecto-sp9_F_contig9791.17880.1 ID=mRNA_Ecto-sp9_F_contig9791.17880.1|Name=mRNA_Ecto-sp9_F_contig9791.17880.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=882bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9791:728..1529+ (Ectocarpus species9 EcSCA_722f female)back to top |