mRNA_Ecto-sp9_F_contig9791.17880.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9791.17880.1
Unique NamemRNA_Ecto-sp9_F_contig9791.17880.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Match: Uncharacterized (protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 9.290e-57
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 3
Query:    3 IHLLAQFVEHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGELTNLVGECDNAEA 269
            IHLLAQFV+HFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGEL NLVGECDNAEA
Sbjct:  398 IHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGELDNLVGECDNAEA 486          
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 8.590e-53
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 3
Query:    3 IHLLAQFVEHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGELTNLVGECDNAE 266
            IHLLAQFV+HFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACT NDLRTRYEEEYPMGEL NLVGECDN E
Sbjct:  355 IHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTKNDLRTRYEEEYPMGELDNLVGECDNEE 442          
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 1.980e-46
Identity = 74/88 (84.09%), Postives = 79/88 (89.77%), Query Frame = 3
Query:    3 IHLLAQFVEHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGELTNLVGECDNAE 266
            IHLL+QFV++FDHRDRRGY+GNIEGAPMCGCIEEMP VSEADCTTYD +P REGKFTACT NDLRTRYE EYP GEL NLV  CDNAE
Sbjct:  384 IHLLSQFVQNFDHRDRRGYYGNIEGAPMCGCIEEMPVVSEADCTTYDTDPEREGKFTACTKNDLRTRYEAEYPTGELANLVDTCDNAE 471          
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L319_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 8.220e-32
Identity = 68/133 (51.13%), Postives = 75/133 (56.39%), Query Frame = 3
Query:    3 IHLLAQFVEHFDHRDRRGYFG---------------------------------------------NIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGELTNLVGECDNAE 266
            IHLL+QFV+ FDHRDRRGY+G                                             +IEGAPM GC+EEMP VSEAD TTYD +P REGKFTACT NDL TRY E+YP GEL NLVG  DNAE
Sbjct:  311 IHLLSQFVQKFDHRDRRGYYGKYITVGKAAHNVIMVNGRTTGPGEDNTNNPLSPPPNVSHVILVVTSIEGAPMYGCVEEMPVVSEADGTTYDTDPEREGKFTACTTNDLCTRYAEDYPTGELANLVGTYDNAE 443          
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.160e-29
Identity = 53/86 (61.63%), Postives = 63/86 (73.26%), Query Frame = 3
Query:    3 IHLLAQFVEHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGELTNLVGECDN 260
            IHLLAQ+V+ FDH   +GY+GNIEGAPMCGC E+MP+VS+ADCT Y      E +   C  NDLRTRY+  YP G+L NLVG CDN
Sbjct:  332 IHLLAQYVQTFDHIGNKGYYGNIEGAPMCGCAEDMPEVSKADCTNYSPTEEDEDRIRGCDPNDLRTRYDVLYPDGDLDNLVGRCDN 417          
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT81_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.870e-27
Identity = 54/68 (79.41%), Postives = 56/68 (82.35%), Query Frame = 3
Query:   81 PMCGCIEEMP-----QVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGELTNLVGECDNAEA 269
            P  G   E P     +VSEADCTTYDNEPGREGKFTACT NDLRTRYEEEYPMGEL+NLVGECDNAEA
Sbjct:  202 PSMGETTEYPGGSEGEVSEADCTTYDNEPGREGKFTACTKNDLRTRYEEEYPMGELSNLVGECDNAEA 269          
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 8.810e-18
Identity = 43/87 (49.43%), Postives = 52/87 (59.77%), Query Frame = 3
Query:    3 IHLLAQFVEHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGELTNL-VGECDN 260
            I  LA  V   +H D + Y GNI GAP+C C+EEMP+VS ADCT Y         F AC+ NDLR  Y+E YP G   +L V +CDN
Sbjct:  114 IKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELYPTGRGRDLLVKKCDN 200          
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 2.900e-17
Identity = 43/87 (49.43%), Postives = 52/87 (59.77%), Query Frame = 3
Query:    3 IHLLAQFVEHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGELTNL-VGECDN 260
            I  LA  V   +H D + Y GNI GAP+C C+EEMP+VS ADCT Y         F AC+ NDLR  Y+E YP G   +L V +CDN
Sbjct:  178 IKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELYPTGRGRDLLVKKCDN 264          
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G6_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 9.550e-11
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 3
Query:   12 LAQFVEHFDHRDRRG-YFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEY--PMGELT-NLVGECDNA 263
            L  +V++    +  G Y+G++EGAP CGCIEEMPQVS A+C+ +D +         C    L ++Y      P GE+  NLV  CDNA
Sbjct:   98 LYHYVKNIGRTEEEGGYYGSVEGAPECGCIEEMPQVSFAECSRFDIDG-----IVGCGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA 180          
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS4_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.650e-10
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 3
Query:   12 LAQFVEHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLR 197
            LA  V +  H + +GYFG+I GAP+C C+E MP+VS +DC+ Y     +   F AC  NDLR
Sbjct:   54 LALDVAYNHHVEEKGYFGHIPGAPVCDCLERMPEVSRSDCSQYRPAHLKGSDFMACPKNDLR 115          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9791.17880.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized9.290e-5797.75protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0... [more]
Uncharacterized8.590e-5395.45protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.980e-4684.09protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.220e-3251.13protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.160e-2961.63protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54... [more]
Uncharacterized1.870e-2779.41protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.810e-1849.43protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.900e-1749.43protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.550e-1140.91protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.650e-1046.77protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9791contigEcto-sp9_F_contig9791:728..1529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size636
Cds size441
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9791.17880.1prot_Ecto-sp9_F_contig9791.17880.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9791 728..1335 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931070.790875-CDS-Ecto-sp9_F_contig9791:727..7941622931070.790875-CDS-Ecto-sp9_F_contig9791:727..794Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9791 728..794 +
1692279019.147747-CDS-Ecto-sp9_F_contig9791:727..7941692279019.147747-CDS-Ecto-sp9_F_contig9791:727..794Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9791 728..794 +
1622931070.8145049-CDS-Ecto-sp9_F_contig9791:961..13351622931070.8145049-CDS-Ecto-sp9_F_contig9791:961..1335Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9791 962..1335 +
1692279019.1583073-CDS-Ecto-sp9_F_contig9791:961..13351692279019.1583073-CDS-Ecto-sp9_F_contig9791:961..1335Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9791 962..1335 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931070.8335176-UTR-Ecto-sp9_F_contig9791:1335..15291622931070.8335176-UTR-Ecto-sp9_F_contig9791:1335..1529Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9791 1336..1529 +
1692279019.169598-UTR-Ecto-sp9_F_contig9791:1335..15291692279019.169598-UTR-Ecto-sp9_F_contig9791:1335..1529Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9791 1336..1529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9791.17880.1

>prot_Ecto-sp9_F_contig9791.17880.1 ID=prot_Ecto-sp9_F_contig9791.17880.1|Name=mRNA_Ecto-sp9_F_contig9791.17880.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=147bp
TSTSWRSSWSTSTTGTGGATSETSRVRPCAAASRKCRRFPRPTARRTTTS
RAERASSRRAPTTTFAPVTKRSTPWASLPTWWASATTRRLDFDTSMALAF
CSLLRSHRQTTLPYVAVARHVDDELPIAGTRSTGFNFTSVSPQVVD*
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mRNA from alignment at Ecto-sp9_F_contig9791:728..1529+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9791.17880.1 ID=mRNA_Ecto-sp9_F_contig9791.17880.1|Name=mRNA_Ecto-sp9_F_contig9791.17880.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=802bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9791:728..1529+ (Ectocarpus species9 EcSCA_722f female)
ACATCCACCTCCTGGCGCAGTTCGTGGAGCACTTCGACCACAGGGACAGG AGGGGCTACTTCGGAAAGTGAGATATTTTGTCTTTGGGTACCTATGCTGG CTCCCTATGTTTTGATATTTGTGTCCGACGTTTTGTTTTATCTTGCATGG CGCTCATTTTTCCCTTTTCCCTTCTCACTCGCATTAACACCCCTGTCCCT TCCTCCGGTTCATTGATTTCCCCCTGCCGTTCAGCATCGAGGGTGCGCCC ATGTGCGGCTGCATCGAGGAAATGCCGCAGGTTTCCGAGGCCGACTGCAC GACGTACGACAACGAGCCGGGCCGAGAGGGCAAGTTCACGGCGTGCACCA ACAACGACCTTCGCACCCGTTACGAAGAGGAGTACCCCATGGGCGAGCTT ACCAACCTGGTGGGCGAGTGCGACAACGCGGAGGCTTGATTTTGATACCA GCATGGCCTTGGCCTTCTGTTCGCTTTTACGATCACATCGACAGACGACC CTGCCCTATGTCGCTGTCGCACGGCATGTAGATGACGAACTCCCAATTGC GGGAACTCGCAGTACAGGTTTTAATTTTACATCAGTCTCTCCCCAGGTTG TAGATTAGTTCGTCACATCGTCTTGACGTATGCTATCACATATTTCGGGC CCCAACTGCTTTCGACGCCAAGCATTTTATGTGTAGGCACGCTCGGTGTG TTGGAAGCCGAACTTGGACGGTTCCTTCGTTGTGTGTAGTTGATCCGTAT CAAAGCGTTGATCGAACTGTGTTGCGAATCGGACTCCGGGGGTACGGGCG GG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9791:728..1529+

>mRNA_Ecto-sp9_F_contig9791.17880.1 ID=mRNA_Ecto-sp9_F_contig9791.17880.1|Name=mRNA_Ecto-sp9_F_contig9791.17880.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=882bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9791:728..1529+ (Ectocarpus species9 EcSCA_722f female)
ACATCCACCTCCTGGCGCAGTTCGTGGAGCACTTCGACCACAGGGACAGG
AGGGGCTACTTCGGAAAACATCCACCTCCTGGCGCAGTTCGTGGAGCACT
TCGACCACAGGGACAGGAGGGGCTACTTCGGAAACATCGAGGGTGCGCCC
ATGTGCGGCTGCATCGAGGAAATGCCGCAGGTTTCCGAGGCCGACTGCAC
GACGTACGACAACGAGCCGGGCCGAGAGGGCAAGTTCACGGCGTGCACCA
ACAACGACCTTCGCACCCGTTACGAAGAGGAGTACCCCATGGGCGAGCTT
ACCAACCTGGTGGGCGAGTGCGACAACGCGGAGGCTTGATTTTGATACCA
GCATGGCCTTGGCCTTCTGTTCGCTTTTACGATCACATCGACAGACGACC
CTGCCCTATGTCGCTGTCGCACGGCATGTAGATGACGAACTCCCAATTGC
GGGAACTCGCAGTACAGGTTTTAATTTTACATCAGTCTCTCCCCAGGTTG
TAGATTAGCATCGAGGGTGCGCCCATGTGCGGCTGCATCGAGGAAATGCC
GCAGGTTTCCGAGGCCGACTGCACGACGTACGACAACGAGCCGGGCCGAG
AGGGCAAGTTCACGGCGTGCACCAACAACGACCTTCGCACCCGTTACGAA
GAGGAGTACCCCATGGGCGAGCTTACCAACCTGGTGGGCGAGTGCGACAA
CGCGGAGGCTTGATTTTGATACCAGCATGGCCTTGGCCTTCTGTTCGCTT
TTACGATCACATCGACAGACGACCCTGCCCTATGTCGCTGTCGCACGGCA
TGTAGATGACGAACTCCCAATTGCGGGAACTCGCAGTACAGGTTTTAATT
TTACATCAGTCTCTCCCCAGGTTGTAGATTAG
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