mRNA_Ecto-sp9_F_contig979.17877.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig979.17877.1 vs.
Match: 3-hydroxyisobutyrate (dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD25_ECTSI) HSP 1 Score: 549 bits (1414), Expect = 1.350e-189 Identity = 293/303 (96.70%), Postives = 296/303 (97.69%), Query Frame = 3
Query: 267 MGSCMARSLVRAGHDVLLFDVDARKAKAVAADTGATAASSLKEVAQASPFIVTMLPNTSNVEKVYLGGTSHHRREGATTDGPSLSPEKQRVRQAGNDDTETGRGLLDWVRSGTLVVDSSTIDPLASRRVNAIAESKGVTMVDAPVSGGVPAAADATLTFMVGGTDEGMELARPLLMAMGSKAVHCGDAGAGCIAKVCNNLSLAISMIGVAEAMSLGSKMGMDAKVLASVLNSSTARCWSSEAYNPFPGVMENVPSSRDFQGGFAASLMEKDLHLALQAASESSQSLSMGAHAHQLYSQLCNEG 1175
MGSCMA SLVRAGHDVLLFDVDARKAKAVAADTGATAASSLKEVAQAS FIVTMLPNTSNVEKVYLGGTSHHRREGATTDGPSLSPEKQRVRQAGN DTET +GLLDWVRSGTLVVDSSTIDPLASRRVNAIAE KGVTMVDAPVSGGVPAAA+ATLTFMVGGTDEG+ELARPLLMAMGSKAVHCGDAGAGCIAKVCNNLSLAISMIGVAEAMSLGSKMGMDAKVLASVLNSSTARCWSSEAYNPFPGVMENVPSSR FQGGFAASLMEKDLHLALQAASESSQSL MGAHAHQLYSQLCNEG
Sbjct: 1 MGSCMATSLVRAGHDVLLFDVDARKAKAVAADTGATAASSLKEVAQASLFIVTMLPNTSNVEKVYLGGTSHHRREGATTDGPSLSPEKQRVRQAGNGDTETEQGLLDWVRSGTLVVDSSTIDPLASRRVNAIAEIKGVTMVDAPVSGGVPAAANATLTFMVGGTDEGLELARPLLMAMGSKAVHCGDAGAGCIAKVCNNLSLAISMIGVAEAMSLGSKMGMDAKVLASVLNSSTARCWSSEAYNPFPGVMENVPSSRGFQGGFAASLMEKDLHLALQAASESSQSLPMGAHAHQLYSQLCNEG 303
BLAST of mRNA_Ecto-sp9_F_contig979.17877.1 vs.
Match: 3-hydroxyisobutyrate (dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMW9_9STRA) HSP 1 Score: 301 bits (772), Expect = 6.020e-93 Identity = 183/350 (52.29%), Postives = 227/350 (64.86%), Query Frame = 3
Query: 171 PCDATSRGTGLPRRRCFSRLAEGSVGFIGLGNMGSCMARSLVRAGHDVLLFDVDARKAKA-VAADTGATAASSLKEVAQASPFIVTMLPNTSNVEKVYLGGTSHHRREGATTDGPSLSPEKQRVRQAGNDDTETGRGLLDWVRSGTLVVDSSTIDPLASRRVNAIAESKGVTMVDAPVSGGVPAAADATLTFMVGGTDEGMELARPLLMAMGSKAVHCGDAGAGCIAKVCNNLSLAISMIGVAEAMSLGSKMGMDAKVLASVLNSSTARCWSSEAYNPFPGVMENVPSSRDFQGGFAASLMEKDLHLALQAASESSQSLSMGAHAHQLYSQLCNEGNAHKDFSSIYELVA 1217
P S G R S G VGFIGLGNMGS MA +L++AGH VL+ D KA+A VAA A AA++L+++A+ IVTMLPNT++VE V+ GR LL R G L++DSSTI P AS + A A + GV MVDAPVSGGVPAAA TLTF+VGGT E A PLL AMGS+A+ CG AGAGC+AK+CNNL+LAISM+G+AE M+LG K+G+ +VLA V N+STARCWSSE+YNP+PGVM+NVP+SR + GGF +LMEKDL LAL AA ES S MGA AHQLY+ + G+ KDFS++ +L+A
Sbjct: 12 PWRTASSSLGGSLRGVASAGYLGPVGFIGLGNMGSNMAANLIKAGHTVLVHDAQPEKAEALVAAHPTARAAAALEDIARECGAIVTMLPNTAHVEMVH------------------------------------GR-LLCAARRGALLIDSSTIAPAASAALAARAAAAGVDMVDAPVSGGVPAAAAGTLTFIVGGTQPAFERAVPLLNAMGSRALLCGSAGAGCVAKLCNNLALAISMVGIAEGMNLGVKLGVKPEVLAQVFNTSTARCWSSESYNPYPGVMDNVPASRGYTGGFTTNLMEKDLFLALAAARESHSSTPMGALAHQLYALMQTHGSGAKDFSAVMQLIA 324
BLAST of mRNA_Ecto-sp9_F_contig979.17877.1 vs.
Match: 3-hydroxyisobutyrate (dehydrogenase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RQE6_9STRA) HSP 1 Score: 288 bits (738), Expect = 2.010e-88 Identity = 167/337 (49.55%), Postives = 218/337 (64.69%), Query Frame = 3
Query: 207 RRRCFSRLAEGSVGFIGLGNMGSCMARSLVRAGHDVLLFDVDARKAKAVAADTGATAASSLKEVAQASPFIVTMLPNTSNVEKVYLGGTSHHRREGATTDGPSLSPEKQRVRQAGNDDTETGRGLLDWVRSGTLVVDSSTIDPLASRRVNAIAESKGVTMVDAPVSGGVPAAADATLTFMVGGTDEGMELARPLLMAMGSKAVHCGDAGAGCIAKVCNNLSLAISMIGVAEAMSLGSKMGMDAKVLASVLNSSTARCWSSEAYNPFPGVMENVPSSRDFQGGFAASLMEKDLHLALQAASESSQSLSMGAHAHQLYSQLCNEGNAHKDFSSIYELVA 1217
R+ C ++ +VGFIGLG MG M ++LV+ G++V+ FDV +A A GA A+S+ E+A+ +VTMLP++ +V +VY G PE GLL ++G+L +DSSTIDP +R VN E+ G M+DAPVSGGV A TLTFMVGG+D ++ ARPLLM MGS VHCG G G +AK+CNNLSLAISMIG AEAM+LG+K+GMD KVLASV+N+STARCWSS+ YNP PGVM+ VP+SR ++GGFA +LMEKDL LA +AA S L +GA AH +Y + +G H DF S+Y L++
Sbjct: 2 RQACLEAMSR-AVGFIGLGQMGGRMLKNLVKNGNEVVAFDVSPASIEA-AVSAGAKQAASVAEIARNCETVVTMLPSSPHVTEVYTG------------------PE----------------GLLSAAQAGSLFIDSSTIDPNVARVVNEAVETHGSEMIDAPVSGGVGGAEAGTLTFMVGGSDSALDKARPLLMDMGSNIVHCGGNGTGEVAKLCNNLSLAISMIGTAEAMNLGNKLGMDPKVLASVMNTSTARCWSSDTYNPCPGVMDGVPASRGYEGGFANALMEKDLFLAAEAARASGSPLPLGAAAHAVYEMMKAQGQGHLDFGSVYLLLS 302
BLAST of mRNA_Ecto-sp9_F_contig979.17877.1 vs.
Match: 3-hydroxyisobutyrate (dehydrogenase n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F7BMB7_CIOIN) HSP 1 Score: 276 bits (706), Expect = 1.780e-83 Identity = 155/336 (46.13%), Postives = 212/336 (63.10%), Query Frame = 3
Query: 213 RCFSRLAEGSVGFIGLGNMGSCMARSLVRAGHDVLLFDVDARKAKAVAADTGATAASSLKEVAQASPFIVTMLPNTSNVEKVYLGGTSHHRREGATTDGPSLSPEKQRVRQAGNDDTETGRGLLDWVRSGTLVVDSSTIDPLASRRVNAIAESKGVTMVDAPVSGGVPAAADATLTFMVGGTDEGMELARPLLMAMGSKAVHCGDAGAGCIAKVCNNLSLAISMIGVAEAMSLGSKMGMDAKVLASVLNSSTARCWSSEAYNPFPGVMENVPSSRDFQGGFAASLMEKDLHLALQAASESSQSLSMGAHAHQLYSQLCNEGNAHKDFSSIYELVAK 1220
+ F + G+VGFIGLGNMG MA +L+++GH V+ FDV K + + G SS EVA+ S I+TMLPN+S+V++VYLG G+L V++G++++DSSTIDP S+ V +E K T +DAPVSGGV AA ATLTFMVGG E E A +L +G VHCG G G AK+CNN+ LAISMIGV+E+M+LG K+G++ K+LA ++N+S+ RCWSS+ YNP PGV+ NVPSS ++QGGF +LM KDL L+ QAAS ++ MGA A Q+Y LC +G KDFSS+++ +++
Sbjct: 24 KVFKLVCTGTVGFIGLGNMGGPMAMNLLKSGHKVVAFDVIEASTKPIV-EAGGQIVSSPSEVAKHSTQIITMLPNSSHVQEVYLGS----------------------------------EGILQSVQAGSILIDSSTIDPAVSQNVAKQSELKSATYLDAPVSGGVGAAQAATLTFMVGGEKEDFETASHILNHVGKNVVHCGGVGTGQAAKICNNMLLAISMIGVSESMNLGIKLGLNPKILAGIINTSSGRCWSSDTYNPVPGVLPNVPSSNNYQGGFGTALMTKDLGLSQQAASATNSLTPMGASALQMYRMLCEKGFGEKDFSSVFKFLSE 324
BLAST of mRNA_Ecto-sp9_F_contig979.17877.1 vs.
Match: 3-hydroxyisobutyrate (dehydrogenase n=2 Tax=Alcaligenaceae bacterium TaxID=2021368 RepID=A0A7X6Z5G4_9BURK) HSP 1 Score: 273 bits (697), Expect = 1.540e-82 Identity = 157/325 (48.31%), Postives = 209/325 (64.31%), Query Frame = 3
Query: 243 VGFIGLGNMGSCMARSLVRAGHDVLLFDVDARKAKAVAADTGATAASSLKEVAQASP-FIVTMLPNTSNVEKVYLGGTSHHRREGATTDGPSLSPEKQRVRQAGNDDTETGRGLLDWVRSGTLVVDSSTIDPLASRRVNAIAESKGVTMVDAPVSGGVPAAADATLTFMVGGTDEGMELARPLLMAMGSKAVHCGDAGAGCIAKVCNNLSLAISMIGVAEAMSLGSKMGMDAKVLASVLNSSTARCWSSEAYNPFPGVMENVPSSRDFQGGFAASLMEKDLHLALQAASESSQSLSMGAHAHQLYSQLCNEGNAHKDFSSIYELV 1214
+GFIGLGNMG MA +L +AGHD+ +FD+ A + T A+S EVA A IVTMLP ++V+ VYLG +DG S G++ +GT+++DSSTIDP ++R V +AESKG+ ++DAPVSGG A +ATLTFMVGGT+EG E A+P+L AMG V+CG G G +AKV NN+ L ISM+GVAEAM+LG K+GMDAK LA ++N+S+ RCWSS+ NP+PGV+E P+ RD+QGGF LM KD+ LAL+AA++S ++ MG AH LY GN DFSS+ +L+
Sbjct: 3 IGFIGLGNMGGPMALNLAKAGHDLTVFDLSADAIANLQEQAQITVAASPVEVAAAGQEVIVTMLPAAAHVKSVYLG-----------SDGES--------------------GIVAASAAGTVMIDSSTIDPASAREVAQVAESKGIVVLDAPVSGGTVGAQNATLTFMVGGTEEGFEKAKPILQAMGKNIVYCGGHGNGQVAKVANNMLLGISMVGVAEAMNLGVKLGMDAKTLAGIINTSSGRCWSSDVNNPWPGVIETAPAGRDYQGGFFTDLMLKDMGLALEAAAQSGCAVEMGELAHNLYKGSSEAGNGRIDFSSVLKLI 296
BLAST of mRNA_Ecto-sp9_F_contig979.17877.1 vs.
Match: 3-hydroxyisobutyrate (dehydrogenase n=1 Tax=Gammaproteobacteria bacterium HGW-Gammaproteobacteria-11 TaxID=2013793 RepID=A0A2N1Z6Y3_9GAMM) HSP 1 Score: 272 bits (696), Expect = 2.020e-82 Identity = 158/324 (48.77%), Postives = 209/324 (64.51%), Query Frame = 3
Query: 243 VGFIGLGNMGSCMARSLVRAGHDVLLFDVDARKAKAVAADTGATAASSLKEVAQASP-FIVTMLPNTSNVEKVYLGGTSHHRREGATTDGPSLSPEKQRVRQAGNDDTETGRGLLDWVRSGTLVVDSSTIDPLASRRVNAIAESKGVTMVDAPVSGGVPAAADATLTFMVGGTDEGMELARPLLMAMGSKAVHCGDAGAGCIAKVCNNLSLAISMIGVAEAMSLGSKMGMDAKVLASVLNSSTARCWSSEAYNPFPGVMENVPSSRDFQGGFAASLMEKDLHLALQAASESSQSLSMGAHAHQLYSQLCNEGNAHKDFSSIYEL 1211
+GFIGLGNMG+ MA +L++AGH + +FD+ A A+ + GA +A+S+ E+A+ +P I++MLP +V+ VYLG GLL V G L++DSSTIDP+++R V+A+A ++G M+DAPVSGG AA TLTFMVGG + A P+L AMG VHCG +G G +AKV NN+ LAISMIG AEAM+LG +GMDAKVLA VLNSS+ RCWSS+ YNP+PGVME VP++R + GGF ++LM KDL LA AA ++ Q + MGA A QLY +GN H DFS+I +L
Sbjct: 3 IGFIGLGNMGAPMALNLLKAGHQLSVFDLSASSVAALV-EAGARSAASVAELARRTPEVIISMLPAAQHVKGVYLGDA----------------------------------GLLAHVAPGVLLIDSSTIDPMSAREVSALALTQGNRMLDAPVSGGTGGAAAGTLTFMVGGAAADFDAALPVLQAMGRNIVHCGPSGNGQVAKVANNMLLAISMIGTAEAMNLGVSLGMDAKVLAGVLNSSSGRCWSSDTYNPYPGVMEGVPAARGYSGGFGSNLMLKDLGLATTAAQQAGQPVPMGALAQQLYQTFSRQGNGHLDFSAIIKL 291
BLAST of mRNA_Ecto-sp9_F_contig979.17877.1 vs.
Match: 3-hydroxyisobutyrate (dehydrogenase, mitochondrial-like n=4 Tax=Haliotis TaxID=6452 RepID=UPI00201E77B2) HSP 1 Score: 273 bits (699), Expect = 2.240e-82 Identity = 159/340 (46.76%), Postives = 207/340 (60.88%), Query Frame = 3
Query: 219 FSRLAEGS--------VGFIGLGNMGSCMARSLVRAGHDVLLFDVDARKAKAVAADTGATAASSLKEVAQASPFIVTMLPNTSNVEKVYLGGTSHHRREGATTDGPSLSPEKQRVRQAGNDDTETGRGLLDWVRSGTLVVDSSTIDPLASRRVNAIAESKGVTMVDAPVSGGVPAAADATLTFMVGGTDEGMELARPLLMAMGSKAVHCGDAGAGCIAKVCNNLSLAISMIGVAEAMSLGSKMGMDAKVLASVLNSSTARCWSSEAYNPFPGVMENVPSSRDFQGGFAASLMEKDLHLALQAASESSQSLSMGAHAHQLYSQLCNEGNAHKDFSSIYELV 1214
F RL GS VGFIGLG MG+ MAR+L++ GH ++++DV + + D GAT A+S EVA AS IV+MLP + +VE VY G G+ ++ GTL++DSSTIDP S+ + +AESKG T VDAPVSGGV AA DA LTFMVGG+D+G A+ L MG VHCG G G AK+CNN+ L ISMIG +E M+LG K+G+D K+LA +LN S+ RCWSSE YNP PGV++ VPSS ++QGGF +LM KDL LA AA+ S + +G+ AHQ+Y + N G KDFSS ++ +
Sbjct: 22 FVRLFSGSAPLGSQQPVGFIGLGLMGNHMARNLIKKGHPLIVYDVSKDSVEGLRKD-GATVAASPAEVAAASSNIVSMLPESVHVETVYAGDN----------------------------------GVFSKLQKGTLLIDSSTIDPAVSQAMAQVAESKGATFVDAPVSGGVNAARDALLTFMVGGSDQGFNAAKVYLELMGKNVVHCGAVGTGQAAKICNNMLLGISMIGTSETMNLGMKLGLDPKLLAKILNMSSGRCWSSEVYNPVPGVVDGVPSSNNYQGGFGTALMAKDLGLAQSAATSSKSATPLGSAAHQIYRTMVNHGFGGKDFSSAFKFL 326
BLAST of mRNA_Ecto-sp9_F_contig979.17877.1 vs.
Match: 3-hydroxyisobutyrate (dehydrogenase n=2 Tax=Alteromonadaceae TaxID=72275 RepID=A0A4P7XJF2_9ALTE) HSP 1 Score: 271 bits (694), Expect = 3.990e-82 Identity = 165/327 (50.46%), Postives = 203/327 (62.08%), Query Frame = 3
Query: 243 VGFIGLGNMGSCMARSLVRAGHDVLLFDVDARKAKAVAADTGATAASSLKEVAQASP-FIVTMLPNTSNVEKVYLGGTSHHRREGATTDGPSLSPEKQRVRQAGNDDTETGRGLLDWVRSGTLVVDSSTIDPLASRRVNAIAESKGVTMVDAPVSGGVPAAADATLTFMVGGTDEGMELARPLLMAMGSKAVHCGDAGAGCIAKVCNNLSLAISMIGVAEAMSLGSKMGMDAKVLASVLNSSTARCWSSEAYNPFPGVMENVPSSRDFQGGFAASLMEKDLHLALQAASESSQSLSMGAHAHQLYSQLCNEGNAHKDFSSIYELVAK 1220
+GFIGLGNMG MA +L++AGH++ ++D+ A A A D GATA +S+ EVA A P I+TMLP +S+V+ VYL GLL VR L++D+STIDP+ +R V A ++G M+DAPVSGG A TLTFMVGG E E ARP+L AMG KA+HCG +G G +AKV NN+ LAISMIGVAEAMSLG +GMD KVLA VLN+ST RCWSS+ YNPFPGV ENVP+SR + GGF LM KDL LA +AA Q + +GA A QLY +GN DFS+I K
Sbjct: 3 IGFIGLGNMGGPMALNLLKAGHNLTVYDLSAN-AVAPVTDAGATAVNSVAEVAAADPAIIITMLPASSHVKAVYLDRD----------------------------------GLLARVRPRVLLIDASTIDPITAREVAGAAGAQGNAMLDAPVSGGTGGAVAGTLTFMVGGEGEDFERARPVLEAMGKKAIHCGPSGNGQVAKVSNNMLLAISMIGVAEAMSLGVGLGMDPKVLAEVLNTSTGRCWSSDTYNPFPGVQENVPASRGYTGGFGTDLMVKDLGLATEAARHIRQPVVLGALAQQLYQGFSAQGNGALDFSAIIRNYRK 294
BLAST of mRNA_Ecto-sp9_F_contig979.17877.1 vs.
Match: 3-hydroxyisobutyrate (dehydrogenase n=13 Tax=Azotobacter TaxID=352 RepID=A0A4U1KRE7_9GAMM) HSP 1 Score: 271 bits (694), Expect = 4.120e-82 Identity = 165/327 (50.46%), Postives = 211/327 (64.53%), Query Frame = 3
Query: 243 VGFIGLGNMGSCMARSLVRAGHDVLLFDVDARKAKAVAADTGATAASSLKEVAQA-SPFIVTMLPNTSNVEKVYLGGTSHHRREGATTDGPSLSPEKQRVRQAGNDDTETGRGLLDWVRSGTLVVDSSTIDPLASRRVNAIAESKGVTMVDAPVSGGVPAAADATLTFMVGGTDEGMELARPLLMAMGSKAVHCGDAGAGCIAKVCNNLSLAISMIGVAEAMSLGSKMGMDAKVLASVLNSSTARCWSSEAYNPFPGVMENVPSSRDFQGGFAASLMEKDLHLALQAASESSQSLSMGAHAHQLYSQLCNEGNAHKDFSSIYELVAK 1220
+GFIGLGNMG+ MAR+L++ GH + + D+ A A A A+TGA+A S VA++ + I+TMLP ++V+ VYLG EG GLLD VR G L++DSSTIDPL++R V A A + G M+DAPVSGG AA +LTFMVGG E E ARP+L AMG VHCGDAG G +AKV NNL L ISMIG AEAMSLG +GMDA+VLA V+NSS+ RCWSS+ YNPFPGV+++VP++R ++GGF + LM KDL LA +AA + Q + +GA A QLY +G+ DFS+I L K
Sbjct: 3 IGFIGLGNMGTPMARNLLKTGHRLSVCDLSAA-AVAALAETGASACDSPAAVARSEAELIITMLPAAAHVKAVYLG-------EG---------------------------GLLDQVRPGLLLIDSSTIDPLSAREVAAAARAHGNPMLDAPVSGGTAGAAAGSLTFMVGGAAEDFERARPILAAMGKNIVHCGDAGNGQVAKVANNLLLGISMIGAAEAMSLGVALGMDARVLAGVINSSSGRCWSSDTYNPFPGVLDDVPAARGYRGGFRSDLMLKDLGLASEAARQVGQPVFLGALAQQLYQVFVAQGHEALDFSAIIHLYNK 294
BLAST of mRNA_Ecto-sp9_F_contig979.17877.1 vs.
Match: 3-hydroxyisobutyrate (dehydrogenase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z4H3_9MYCE) HSP 1 Score: 271 bits (693), Expect = 7.010e-82 Identity = 152/336 (45.24%), Postives = 208/336 (61.90%), Query Frame = 3
Query: 219 FSRLAEGSVGFIGLGNMGSCMARSLVRAGHDVLLFDVDARKAKAVAADTGATAASSLKEVAQASPFIVTMLPNTSNVEKVYLGGTSHHRREGATTDGPSLSPEKQRVRQAGNDDTETGRGLLDWVRSGTLVVDSSTIDPLASRRVNAIAESKGVTMVDAPVSGGVPAAADATLTFMVGGTDEGMELARPLLMAMGSKAVHCGDAGAGCIAKVCNNLSLAISMIGVAEAMSLGSKMGMDAKVLASVLNSSTARCWSSEAYNPFPGVMENVPSSRDFQGGFAASLMEKDLHLALQAASESSQSLSMGAHAHQLYSQLCNEGNAHKDFSSIYELVAK*P 1226
S ++ ++GFIGLGNMG+ A +L++ GH V+++D + + + GA AS+ E+A+ S IVTMLP +++V+ VYLG G+L V+ GTL++DSSTIDP +R V A T++D PVSGG A TLTFMVGG ++ ELA+P+L MG VHCGD G G +AKVCNNL L ISM+GV+EAM+LG K+GMD K LA + N+S+ARCW+SE YNP PGV+EN P+SR + GGF ++LM KDL LA+ +A ++L +G AHQ Y+Q+ N+G KDFS+ YE + K P
Sbjct: 1 MSTTSKKTIGFIGLGNMGAHQASNLIKNGHKVIVYDTSSERMNLLL-QKGAELASTPSEIAKRSEIIVTMLPASAHVKNVYLGQD----------------------------------GILSSVKPGTLLLDSSTIDPQTAREVADQAAKHQATLLDCPVSGGTGGAEAGTLTFMVGGKEKDFELAKPILSCMGKNIVHCGDVGTGQVAKVCNNLVLGISMVGVSEAMNLGVKLGMDPKKLAGIFNTSSARCWTSELYNPCPGVLENSPASRGYTGGFGSALMNKDLGLAVDSAKAIGENLYLGNVAHQFYTQMVNKGLGQKDFSAAYEFLQKTP 301 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig979.17877.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig979.17877.1 >prot_Ecto-sp9_F_contig979.17877.1 ID=prot_Ecto-sp9_F_contig979.17877.1|Name=mRNA_Ecto-sp9_F_contig979.17877.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=378bp MLLRRHCSLALGAYRRCSRRPCFKPAEPCDATSRGTGLPRRRCFSRLAEGback to top mRNA from alignment at Ecto-sp9_F_contig979:10271..16389+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig979.17877.1 ID=mRNA_Ecto-sp9_F_contig979.17877.1|Name=mRNA_Ecto-sp9_F_contig979.17877.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=6119bp|location=Sequence derived from alignment at Ecto-sp9_F_contig979:10271..16389+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig979:10271..16389+ >mRNA_Ecto-sp9_F_contig979.17877.1 ID=mRNA_Ecto-sp9_F_contig979.17877.1|Name=mRNA_Ecto-sp9_F_contig979.17877.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2268bp|location=Sequence derived from alignment at Ecto-sp9_F_contig979:10271..16389+ (Ectocarpus species9 EcSCA_722f female)back to top |