mRNA_Ecto-sp9_F_contig9786.17874.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9786.17874.1
Unique NamemRNA_Ecto-sp9_F_contig9786.17874.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9786.17874.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5F6_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.820e-33
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 3 
Query:  483 VGHILLCVSANFFAMKHPGSVAFLVLGIVVIIPGAHSSFQLFAAFRRWPGYDFDDMRGNGDYV 671
            +G ILLCVSANFFAMKHPGSVAFLVLGIVVIIPGAHSSFQLFAAFRRWPGYDFDDMRG+GD+V
Sbjct:   60 LGLILLCVSANFFAMKHPGSVAFLVLGIVVIIPGAHSSFQLFAAFRRWPGYDFDDMRGSGDFV 122
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BLAST of mRNA_Ecto-sp9_F_contig9786.17874.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3N7_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 7.410e-31
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 2 
Query:  278 MSSTMRSPEITRSPARVAGAGAGGRNLQSIGRQRSLVEDHPDNERIPARTVCAAFSLLVLGLVS 469
            MSSTMRSPEI+RSPARVAGAGAGGRNLQSIGRQRSLVEDHPDNERIPARTVCAAFSLLVLGL+S
Sbjct:    1 MSSTMRSPEISRSPARVAGAGAGGRNLQSIGRQRSLVEDHPDNERIPARTVCAAFSLLVLGLLS 64
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9786.17874.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.820e-3393.65protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.410e-3196.88protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9786contigEcto-sp9_F_contig9786:1804..4938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size742
Cds size405
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9786.17874.1prot_Ecto-sp9_F_contig9786.17874.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9786 1804..2529 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931069.9318814-CDS-Ecto-sp9_F_contig9786:1803..18631622931069.9318814-CDS-Ecto-sp9_F_contig9786:1803..1863Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9786 1804..1863 +
1692279018.7040281-CDS-Ecto-sp9_F_contig9786:1803..18631692279018.7040281-CDS-Ecto-sp9_F_contig9786:1803..1863Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9786 1804..1863 +
1622931069.9514806-CDS-Ecto-sp9_F_contig9786:2184..25291622931069.9514806-CDS-Ecto-sp9_F_contig9786:2184..2529Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9786 2185..2529 +
1692279018.7144873-CDS-Ecto-sp9_F_contig9786:2184..25291692279018.7144873-CDS-Ecto-sp9_F_contig9786:2184..2529Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9786 2185..2529 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931069.9781313-UTR-Ecto-sp9_F_contig9786:2529..26151622931069.9781313-UTR-Ecto-sp9_F_contig9786:2529..2615Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9786 2530..2615 +
1692279018.7264779-UTR-Ecto-sp9_F_contig9786:2529..26151692279018.7264779-UTR-Ecto-sp9_F_contig9786:2529..2615Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9786 2530..2615 +
1622931069.9915407-UTR-Ecto-sp9_F_contig9786:3877..39561622931069.9915407-UTR-Ecto-sp9_F_contig9786:3877..3956Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9786 3878..3956 +
1692279018.7359724-UTR-Ecto-sp9_F_contig9786:3877..39561692279018.7359724-UTR-Ecto-sp9_F_contig9786:3877..3956Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9786 3878..3956 +
1622931070.0059888-UTR-Ecto-sp9_F_contig9786:4767..49381622931070.0059888-UTR-Ecto-sp9_F_contig9786:4767..4938Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9786 4768..4938 +
1692279018.7462234-UTR-Ecto-sp9_F_contig9786:4767..49381692279018.7462234-UTR-Ecto-sp9_F_contig9786:4767..4938Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9786 4768..4938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9786.17874.1

>prot_Ecto-sp9_F_contig9786.17874.1 ID=prot_Ecto-sp9_F_contig9786.17874.1|Name=mRNA_Ecto-sp9_F_contig9786.17874.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=135bp
RSATSGESANTLRLYRGCKSLRGKACKGQQPAARVSATPTAAQRTRLDWF
YIICSAAGPPRLPLLPYLNKRRRTCRWSSNLFRFSVGCPNREDVVHHAIS
GDNALPGASRGCGRGREESSVDRETAIAGGRPPR*
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mRNA from alignment at Ecto-sp9_F_contig9786:1804..4938+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9786.17874.1 ID=mRNA_Ecto-sp9_F_contig9786.17874.1|Name=mRNA_Ecto-sp9_F_contig9786.17874.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3135bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9786:1804..4938+ (Ectocarpus species9 EcSCA_722f female)
AGAAGTGCAACAAGCGGGGAGAGCGCTAACACGCTTAGACTCTATCGTGG
GTGCAAATCGGTGAGCATGCGACGAATTTATTCGGTTCCCATCGTAGGGC
GTTGCAACTTGTTCTCTCAAACTCCAAATGTGTGTGTATGCATTGTAGTG
CAGCATCGTAAGACTACAGGTACTGCTGTTGCAGTAGCGCACTGTAGCTG
CTGCAACTTGTATCCTATGAGGCAAGCAGGAGTACCCTCTGCTTTGTTCC
AGCCAACGAGTTGACATCGCACTTGTCCGTACCTCTACGCCTCTACATGT
AAATCCCTCCTCTGTCTCTGCTGTCTCGCGTTCTGCGGGTGTGCGTTTCC
ATCTCCTCACCTACATACAACTGTATCGTAGCTGAGAGGGAAAGCCTGCA
AGGGACAACAACCGGCGGCGCGCGTCTCTGCCACTCCAACAGCAGCACAG
AGGACCCGGCTGGATTGGTTCTATATAATTTGCTCTGCTGCTGGGCCACC
GCGTCTGCCGCTACTGCCGTACCTCAACAAACGCAGGAGAACCTGCCGCT
GGAGCTCCAATTTGTTCCGCTTCTCTGTGGGGTGTCCCAACAGAGAGGAT
GTCGTCCACCATGCGATCTCCGGAGATAACGCGCTCCCCGGCGCGAGTCG
CGGGTGCGGGCGCGGGCGGGAGGAATCTTCAGTCGATCGGGAGACAGCGA
TCGCTGGTGGAAGACCACCCAGATAACGAGAGGATCCCCGCGAGAACAGT
GTGCGCGGCGTTCTCTCTCCTCGTCCTCGGACTGGTGAGCGGCAAGGAGG
CGTGTAGGTCATGTAAGATACCACACACCCCTTGCGGACGGATTGTCAAA
GCTCGATTACTCCACCACGAAGAGGATGACAGAACCAAAACATGCGTCTT
CGGAGAGCTCTCGAGGAGATGGGTCCAGTGCCGCAAATTTCGACACCGCC
ACTACTGTTTTTGATGCGGAGAAATCGAGCTTTGAAAATGGGCCAAAGCG
GGTGTGGTATCTTGTGCAACACATGAATACGGTAGAGCATTTACCGCTTT
TGCCACCGATACACGTTTCTAGAAAATTACATAAAAACACAGAAAGACTA
CCCGTTCGAGATATGTAACCACATTGGCGGAAGGGGATGCGTTGAAGCCT
TACCAGTGCGTGGAAGAAAGGCCGGTTGGCTTATATTGAGTCTGTTTCCC
GTCGCGTGGGTTCAGCTTGAGAGGTCAAGACAAGAGGGAGGGAGGGAGAC
CGAGAGGCAAAGACCTTTGAGAAGACAGAGACACAGCACAGAGAGGGGGG
AAGTGGAAGCGTGCTGCGTAGGATTTTGTCTCTTCGACTGGACGTGATGA
GTGGTCGCACGTTGTTTCGCTGAGTAGAACTAGCTGCAGTGCTTGGAGGA
TGTTCCTTGCTGGGAGTGCCGTGGGTCTGTGGAATGCACATGATATTTCT
ATGTTGCAGGCAATGTAACGTCGTTCTCTGAACAAGCACAAGACGGTTCG
AAACCCTGGCCCGTGCAGGCAAAGCGCCTGTTAGCTGGTGCCGGTGCCAT
CCCCATGTGGTTCAAGTTTCGTCGCGAAGACGATACTGCTGCTGCTGCTG
CTGCTGCTGCTGTTGTTGTCTCTGCTCAGAAGTACCCTCATATTGCCATG
CAATTATTCGAAGTCAGTACCCTGACCCTGGAACATTCGACGGACGAAGG
CTGGGAGGATAGCGCTTTGTCGTGTTTCTAAGTACCTCTGTAGGATGTAT
ATGCTGCCACACATAGAACCGTGGTGTTGTGCACGAGGTGTGTTCTGCAG
GGCAAACGCGTGCGTGTTGGTTCGGGAGCACGATCCGGCGCCCAACGGTG
TTGGTGGCTGACCTACCGGGCGCGCGTAGGCATTGGGCGGGTAGAACAAG
TGTGCATGGCGTAAAGACGGCAAAGAAGTGCCGAAAGCTATCCAAACGCG
CTACCTCTCCTCGTCGCTAAAAGTAGTTTGACTTGGCGTTGATTATTTAT
TTTGAGAGCCCACAGGGGATGATCATTTTTCCTGTGTTCCTATCTCCCAT
TCTGGTTCGCGCGCGCTGTTTCAGATCCTGTTGTGCGTGAGCGCAAATTT
CTTCGCGATGAAACACCCTGGTTCGGTTGCCTTCTTAGTGCTCGGAATCG
TCGGTAAGTGCAATCCTCTTCGTGTATGTGGGGAGGGGGGAGAGTAGAAG
AAGAACGACCTTCGCTCCTCGCAATCGCCGACCCTTGGAGGGCGCTTTTT
TTTTTTTTTTTTGCGTGCTCATCCTTTCGCGGCTATATTGCGTCCCCAAA
ACTGAAAATAAAAAAATGCCCAAATCAAAACACAAACAAAACACACACAA
TAAGAAAACATTTATATAATAGTACCGCGCGATTCATGTATATATGTATC
CCCCCTTACAATTCAGGCTATGATTGTAGGCTCCTGCAATAGGGAGTTAG
TGTGCCCACATTACGACCTTCTTTTTTCGTTTTGGAACTCTGTGGCGTTG
GGCATTTTAGGGCCGTGCGCCTCCCGTTCCTTGCACTATGTAATACGAAG
TACAATATGAACATGTACCGAACGAGTTGTCACTGCGCATTTTTTGGCGT
GGTCTCGTTGGTTTTTGTTCTCCTCTCCTAGCCGGTGCTGCAACTTCACG
GTAGTACAGTACAGTAGCGCCCAACCTCGTCACCCAAGCCTGCCGCCGTC
GCACACCCTTTCCGCAGCCCCTGCTGCAACCTCCCCTCCAGTGCAATCGA
TGAGAAATGTTTGCACCCTTTTGTTATGGTTCCTATTTTTTATCTCTGAA
AACCTCCTACAATACCTTTGAGGAGCAACGTGTAGTATCAGGAGAAATAA
GAAAATAAGTAAAGTATTGAAGAGCAAGTAAATTCTATTGAAGAGTAATT
TTTTATTGTTTCCTCGATGACGACATCCCCCAATCCGCCTCCGCCCGTGC
GCGCGCGAGCTCAGTTATCATTCCGGGGGCGCATAGCAGCTTTCAGCTCT
TCGCGGCGTTTCGACGATGGCCCGGGTACGACTTCGATGACATGCGCGGG
AACGGAGATTATGTTTGATTGTTTTTCTTTTTTTCAGCTTCTTGTGTACG
GAAGGGCCAGCGCTAAGGCGCGGTGGAGGCAGGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9786:1804..4938+

>mRNA_Ecto-sp9_F_contig9786.17874.1 ID=mRNA_Ecto-sp9_F_contig9786.17874.1|Name=mRNA_Ecto-sp9_F_contig9786.17874.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=810bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9786:1804..4938+ (Ectocarpus species9 EcSCA_722f female)
AGAAGTGCAACAAGCGGGGAGAGCGCTAACACGCTTAGACTCTATCGTGG
GTGCAAATCGAGAAGTGCAACAAGCGGGGAGAGCGCTAACACGCTTAGAC
TCTATCGTGGGTGCAAATCGCTGAGAGGGAAAGCCTGCAAGGGACAACAA
CCGGCGGCGCGCGTCTCTGCCACTCCAACAGCAGCACAGAGGACCCGGCT
GGATTGGTTCTATATAATTTGCTCTGCTGCTGGGCCACCGCGTCTGCCGC
TACTGCCGTACCTCAACAAACGCAGGAGAACCTGCCGCTGGAGCTCCAAT
TTGTTCCGCTTCTCTGTGGGGTGTCCCAACAGAGAGGATGTCGTCCACCA
TGCGATCTCCGGAGATAACGCGCTCCCCGGCGCGAGTCGCGGGTGCGGGC
GCGGGCGGGAGGAATCTTCAGTCGATCGGGAGACAGCGATCGCTGGTGGA
AGACCACCCAGATAACTGAGAGGGAAAGCCTGCAAGGGACAACAACCGGC
GGCGCGCGTCTCTGCCACTCCAACAGCAGCACAGAGGACCCGGCTGGATT
GGTTCTATATAATTTGCTCTGCTGCTGGGCCACCGCGTCTGCCGCTACTG
CCGTACCTCAACAAACGCAGGAGAACCTGCCGCTGGAGCTCCAATTTGTT
CCGCTTCTCTGTGGGGTGTCCCAACAGAGAGGATGTCGTCCACCATGCGA
TCTCCGGAGATAACGCGCTCCCCGGCGCGAGTCGCGGGTGCGGGCGCGGG
CGGGAGGAATCTTCAGTCGATCGGGAGACAGCGATCGCTGGTGGAAGACC
ACCCAGATAA
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