mRNA_Ecto-sp9_F_contig973.17833.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig973.17833.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXU0_9PHAE) HSP 1 Score: 570 bits (1469), Expect = 1.140e-186 Identity = 442/540 (81.85%), Postives = 450/540 (83.33%), Query Frame = 1
Query: 4 RQVRGGTHRSPSARQRXXXXXXXXXXXXXXXXSLAWAEDKRGXXXXXXXXXXXXXXXXXXXXXXXX------HNMAEFSPDGRTNTDNNASPTSNAGRPRYRLRRNLLEKRARAGGXXXXXXXAGGESRDVPRVPLSEVVGVFSGGPSGRREGQAGHDPETYGLFVNLVERMLDQRPETRITPAEALLHPFVVDHHPTSHAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EDGEDGDGDDHAMSGEAAASADGVTGVVVGDRSGREGGAILTTPDAMQSQLSSAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKSAVSSAAMSSLFLSQGHHIDDERGAIGGTFGRAYASDFGAGAGGIANAFGGGGVFGDSHRQMGVHGYTMPLPAAAATAAAASDDYSNEDECFGALGESPSQLLRPRSEPGRPGTAAAAAAAGGCSEPRHRSRR------------------NSPNDVVDSSKRGVYRGDAASAQGAKGKRGVKAARGGGGLRRGRSRGLPVGGVAGDGSLAPS 1548
R+VRGGTHRSPSARQRXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX HNMAEFSPDGRTNTDNNASPTSN GRPRYRLR+NLLEKRARAGG XXXXXX GGESRDVPRVPLSEVVGVFSGGPSGRREG+AGHDPETYGLFVNLVERMLDQRPETRITPAEALLHPFVVDHHPTSHAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +DGED DGDDH+MSGEAAASADGV GVVVGDRSG EGGAILTTPDAMQSQLSS+V XXXXXXXXXXXX KSAVSS AMSSLFLSQGHHIDDERGAI GTFGRAYASDFGAGAGGIA+AFGG FGDSHRQMGVHGYTMPLPA ASDDYSNEDECFGALGESPSQLLRPRSEPGRPGTAA NSPNDVVDSSKRG +RGDAASAQGAKGKRGVKA RGGGGLRRGRSRGLPVGGVAGDGSLAPS
Sbjct: 663 RKVRGGTHRSPSARQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHNMAEFSPDGRTNTDNNASPTSNTGRPRYRLRKNLLEKRARAGGAXXXXXXTGGESRDVPRVPLSEVVGVFSGGPSGRREGEAGHDPETYGLFVNLVERMLDQRPETRITPAEALLHPFVVDHHPTSHAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDGEDADGDDHSMSGEAAASADGVPGVVVGDRSGCEGGAILTTPDAMQSQLSSSVAEXXXXXXXXXXXXATTPADG---------KSAVSSDAMSSLFLSQGHHIDDERGAIEGTFGRAYASDFGAGAGGIASAFGGXXXFGDSHRQMGVHGYTMPLPAXXXXXXXASDDYSNEDECFGALGESPSQLLRPRSEPGRPGTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSPNDVVDSSKRGDHRGDAASAQGAKGKRGVKAPRGGGGLRRGRSRGLPVGGVAGDGSLAPS 1193
BLAST of mRNA_Ecto-sp9_F_contig973.17833.1 vs.
Match: Similar (to Dyrk1a-prov protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN6_ECTSI) HSP 1 Score: 197 bits (502), Expect = 1.890e-50 Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 1
Query: 202 HNMAEFSPDGRTNTDNNASPTSNAGRPRYRLRRNLLEKRARAGGXXXXXXXAGGESRDVPRVPLSEVVGVFSGGPSGRREGQAGHDPETYGLFVNLVERMLDQRPETRI 528
HNMAEFSPDGRTNTDNNASPTSNAGRPRYRLRRNLLEKRARAGGXXXXXXX GGESRDVPRVPLSEVVGVFSGGPSGRREG+AGHDPETYGLFVNLVERMLDQRPET +
Sbjct: 711 HNMAEFSPDGRTNTDNNASPTSNAGRPRYRLRRNLLEKRARAGGXXXXXXXXGGESRDVPRVPLSEVVGVFSGGPSGRREGEAGHDPETYGLFVNLVERMLDQRPETSV 819
BLAST of mRNA_Ecto-sp9_F_contig973.17833.1 vs.
Match: Dual-specificity (kinase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CLZ3_PYTIN) HSP 1 Score: 74.7 bits (182), Expect = 6.190e-12 Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 1
Query: 358 GGESRDVPRVPLSEVVGVFSGGPSGRREGQAGHDPETYGLFVNLVERMLDQRPETRITPAEALLHPFV 561
GG D P L++++GV SGGP GRR + H + Y LF++L++RMLD P TRITP+EAL HPF+
Sbjct: 48 GGGDSDAPTT-LADIIGVESGGPGGRRLNKPDHSVQDYQLFLDLLQRMLDYNPATRITPSEALSHPFI 114
BLAST of mRNA_Ecto-sp9_F_contig973.17833.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUN4_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 2.140e-11 Identity = 39/74 (52.70%), Postives = 48/74 (64.86%), Query Frame = 1
Query: 355 AGGESRDVPRVPLSEVVGVFSGGPSGRREGQAGHDPETYGLFVNLVERMLDQRPETRITPAEALLHPFVVDHHP 576
A G+ D P L+E+VG +GGP R + H PE Y LF++L++RMLD P TRITPAEALLHPFV P
Sbjct: 223 ATGQLGDGP-TSLAEIVGAHTGGPGSIRRTREDHTPEDYRLFLDLLQRMLDYNPATRITPAEALLHPFVTSGRP 295
BLAST of mRNA_Ecto-sp9_F_contig973.17833.1 vs.
Match: Dual-specificity (kinase n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5F4E6_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 3.010e-11 Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 1
Query: 367 SRDVPRVPLSEVVGVFSGGPSGRREGQAGHDPETYGLFVNLVERMLDQRPETRITPAEALLHPFVVD 567
SR LS++VG GGP R +AGH P YGLF+NL++RML+ P RI P EAL HPF+++
Sbjct: 85 SRSEISRSLSDIVGANDGGPRSSRRDEAGHTPADYGLFINLIQRMLEYDPSGRIKPEEALRHPFILE 151
BLAST of mRNA_Ecto-sp9_F_contig973.17833.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SX34_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 3.320e-11 Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1
Query: 391 LSEVVGVFSGGPSGRREGQAGHDPETYGLFVNLVERMLDQRPETRITPAEALLHPFVVD 567
LS+VVG +GGP GRR G+AGH PE Y LFV V RML+ P R+ PA+AL HPF+ D
Sbjct: 353 LSDVVGADTGGPGGRRRGEAGHAPENYRLFVEFVRRMLEYSPSARVEPADALRHPFLDD 411
BLAST of mRNA_Ecto-sp9_F_contig973.17833.1 vs.
Match: Dual-specificity (kinase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WI02_CAPO3) HSP 1 Score: 77.4 bits (189), Expect = 3.960e-11 Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1
Query: 391 LSEVVGVFSGGPSGRREGQAGHDPETYGLFVNLVERMLDQRPETRITPAEALLHPFVVDHHPTS 582
L++++G+ +GGP GRR G+ GH E Y F+NLV R+LD P TRITP EAL+HPF D+ P+S
Sbjct: 558 LADILGIATGGPLGRRMGEKGHSREEYEQFLNLVLRLLDLDPYTRITPREALMHPFFADYTPSS 621
BLAST of mRNA_Ecto-sp9_F_contig973.17833.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBK0_GLOUD) HSP 1 Score: 73.9 bits (180), Expect = 3.600e-10 Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1
Query: 391 LSEVVGVFSGGPSGRREGQAGHDPETYGLFVNLVERMLDQRPETRITPAEALLHPFV 561
L+E+VG +GGP GRR G+ H PE Y LFV+ ++RMLD P TR+TP +AL HPF+
Sbjct: 374 LAEIVGADTGGPGGRRLGKQDHTPEDYRLFVDFIQRMLDYNPATRMTPTQALAHPFM 430
BLAST of mRNA_Ecto-sp9_F_contig973.17833.1 vs.
Match: Hypothetical (protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BC25_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 8.740e-10 Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 1
Query: 367 SRDVPRVPLSEVVGVFSGGPSGRREGQAGHDPETYGLFVNLVERMLDQRPETRITPAEALLHPFVVD 567
SR LS++VG GGP R +AGH P YGLF+NL++RML+ P RI P EAL HPF+++
Sbjct: 416 SRSEISRSLSDIVGANDGGPRSSRRDEAGHTPADYGLFINLIQRMLEYDPSGRIKPEEALRHPFILE 482
BLAST of mRNA_Ecto-sp9_F_contig973.17833.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5J4_PYTOL) HSP 1 Score: 71.6 bits (174), Expect = 1.830e-9 Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 385 VPLSEVVGVFSGGPSGRREGQAGHDPETYGLFVNLVERMLDQRPETRITPAEALLHPFV 561
+ LSE++G +GGP GRR H E Y FV+L++RMLD P TRITP EAL HPF+
Sbjct: 354 ITLSELIGAETGGPGGRRRESPDHTVEDYRRFVDLIQRMLDYNPATRITPTEALAHPFI 412 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig973.17833.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig973.17833.1 >prot_Ecto-sp9_F_contig973.17833.1 ID=prot_Ecto-sp9_F_contig973.17833.1|Name=mRNA_Ecto-sp9_F_contig973.17833.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=635bp MRQVRGGTHRSPSARQRRRKRDDSRGGGGGGGASLAWAEDKRGKGKGGGEback to top mRNA from alignment at Ecto-sp9_F_contig973:25018..27962- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig973.17833.1 ID=mRNA_Ecto-sp9_F_contig973.17833.1|Name=mRNA_Ecto-sp9_F_contig973.17833.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2945bp|location=Sequence derived from alignment at Ecto-sp9_F_contig973:25018..27962- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig973:25018..27962- >mRNA_Ecto-sp9_F_contig973.17833.1 ID=mRNA_Ecto-sp9_F_contig973.17833.1|Name=mRNA_Ecto-sp9_F_contig973.17833.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3810bp|location=Sequence derived from alignment at Ecto-sp9_F_contig973:25018..27962- (Ectocarpus species9 EcSCA_722f female)back to top |